Cp4.1LG02g11480 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g11480
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine/arginine-rich splicing factor SR45a-like isoform X1
Location	Cp4.1LG02: 10464824 .. 10467382 (+)
RNA-Seq Expression	Cp4.1LG02g11480
Synteny	Cp4.1LG02g11480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATGCTCCAGAAACTTCTCTCACCTGGAGGCTATATATTATGCTTTCAGCTTGTTTCGTAAAACTTTATTGCATGCGCTTTCGTGCGAGATATTACTGTCATTGAAAACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCAGCAGTTTGGGCGGTAAATTCTTTCTCTATCTCTCATTTCATGAACTCTTGCATCTATTTTCGTTGATTGAGATGATACGTTTGATTCTTGATTTCGATGATGTTTATGGAGAGAATTAGGGTCGGGTTATTGCTAGATTGTTTTTCTTGTGATTAGCATATTCATTTGGAGTATTTTCTGCAGTTGTCTTGGAATTTTTTTGTTAACTTAGAATATTGGTGGAGAGATTTTGTATTTCTTCATTTTCTTGTTCTTGACGAGTGTTAAACTGACGTTCCGATTTACCAGCTGCTCTATACGAGAAACAAAATCATTGTAATTCTGGTCTTCTATTACTGTTGTACTCTTCTTTAGTAAATCCTGATCGTGTTTAGGCTTTTCTTTGCTGATCAGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGTATTTCTTGCCCAGGAACCCTTTGCTTGGTCGGTTTTTCCCATATTCTCTAGATCATCTGTATGATTCTATTTTGTGGATTTTTTTTTTTCAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGGGAAGCATTTTTCTGCTGAAGGAACGGTATGTCGCAGATCTTATTTTCTTCAAATTTTTTCTTTGGCTTGTACTTTTGATGGTGGTGTATGTGTTTTGTCCTTCCTGTTGGTGATTGAATTTATGGACTATTTTCTCTGTTCGTGAATGAATTTTTCATTCTCCAGGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGAATAATCACCGTGGAGAAGGTAAAAATTAAACCAAGTATAATTTCATAGTCTCGGGATGTTTCTCATTATCATGTTCATCTTCAAATATTTATGAGATCTCTGGATGGTTTGTTGCAAGAGATTTGAGATTTTTGCTCTGTGCACTTGAAGATTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAATCAAACAAAACAAACACATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTTTTATCTGCTAATTGATTCCTGTAGCCTTACTTCCCTCTCTACTGTGGCATGTTCCCCTGCTCTGGTGTTTTTCTTTGATTGACATTTGAATTGTCTCATTTTACATCTCTTATTTTCTGATAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATATTTTGGACTTAGAACAGTCCGTGGTGAGCTTTTAATCTAATGTTTGATTTATTTCTATGAAGTATTGAGCTTTTTTTTTTTTTTTTTTCTAATCCTATGTTTATAACAGTGAGACGTAGATCGCGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGCAGGAGCTTGAGCTGTTCGTCTAATTATTCATCTGACCGTAGCAGGAGCAGATCCCATTCTCCCGATCGACGCCGAAGATCAAATGACTCGCCATACCGCTATAGATCATACTCTCCTTATAGCCACCGAAGATATGATTCTCCATACTATAGGCATCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATATAGTAGGTCGCCGACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATATAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATGGGTCAATTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACTGTAGAAGCGCCTCGAGGAGTTACTCTCGTAGCAGAAGTTATTCACGCAGTATTTCCCCAGAACGAAGCAGGAGATCCGGGAGACATTCACACAGTATCGCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTTGCAGTAGTACTCCGGGGTGCCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGTTTCAAGGTCTGTTAGTCCTGCTTGATTTGCCGATCTACTTCGATCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTGATTGGATGATGTAAAATTTGGTGCCTGGCCATTGATTTGCGGACAGTTATCGCTTTTCTCTGTTCATATCAATCGG

mRNA sequence

CGATGCTCCAGAAACTTCTCTCACCTGGAGGCTATATATTATGCTTTCAGCTTGTTTCGTAAAACTTTATTGCATGCGCTTTCGTGCGAGATATTACTGTCATTGAAAACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCAGCAGTTTGGGCGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGGGAAGCATTTTTCTGCTGAAGGAACGGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGAATAATCACCGTGGAGAAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATATTTTGGACTTAGAACAGTCCGTGTGAGACGTAGATCGCGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGCAGGAGCTTGAGCTGTTCGTCTAATTATTCATCTGACCGTAGCAGGAGCAGATCCCATTCTCCCGATCGACGCCGAAGATCAAATGACTCGCCATACCGCTATAGATCATACTCTCCTTATAGCCACCGAAGATATGATTCTCCATACTATAGGCATCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATATAGTAGGTCGCCGACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATATAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATGGGTCAATTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACTGTAGAAGCGCCTCGAGGAGTTACTCTCGTAGCAGAAGTTATTCACGCAGTATTTCCCCAGAACGAAGCAGGAGATCCGGGAGACATTCACACAGTATCGCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTTGCAGTAGTACTCCGGGGTGCCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGTTTCAAGGTCTGTTAGTCCTGCTTGATTTGCCGATCTACTTCGATCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTGATTGGATGATGTAAAATTTGGTGCCTGGCCATTGATTTGCGGACAGTTATCGCTTTTCTCTGTTCATATCAATCGG

Coding sequence (CDS)

CGATGCTCCAGAAACTTCTCTCACCTGGAGGCTATATATTATGCTTTCAGCTTGTTTCGTAAAACTTTATTGCATGCGCTTTCGTGCGAGATATTACTGTCATTGAAAACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCAGCAGTTTGGGCGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGGGAAGCATTTTTCTGCTGAAGGAACGGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGAATAATCACCGTGGAGAAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATATTTTGGACTTAGAACAGTCCGTGTGAGACGTAGATCGCGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGCAGGAGCTTGAGCTGTTCGTCTAATTATTCATCTGACCGTAGCAGGAGCAGATCCCATTCTCCCGATCGACGCCGAAGATCAAATGACTCGCCATACCGCTATAGATCATACTCTCCTTATAGCCACCGAAGATATGATTCTCCATACTATAGGCATCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATATAGTAGGTCGCCGACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATATAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATGGGTCAATTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACTGTAGAAGCGCCTCGAGGAGTTACTCTCGTAGCAGAAGTTATTCACGCAGTATTTCCCCAGAACGAAGCAGGAGATCCGGGAGACATTCACACAGTATCGCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTTGCAGTAGTACTCCGGGGTGCCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGTTTCAAGGTCTGTTAGTCCTGCTTGA

Protein sequence

RCSRNFSHLEAIYYAFSLFRKTLLHALSCEILLSLKTRLHFLSILVLLQQFGRSQMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPDRRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKARVSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCSSTPGCHKRGGYSGGSGSVVSRSVSPA

Homology

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BLAST of Cp4.1LG02g11480 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.3e-64
Identity = 204/369 (55.28%), Postives = 231/369 (62.60%), Query Frame = 0


Query: 53  RSQMSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRIT 112
           RS MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T
Sbjct: 28  RSPMSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVT 87

Query: 113 RRELGKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIIT 172
            R+L  HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+IT
Sbjct: 88  ERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVIT 147

Query: 173 VEKARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRS 232
           VEKARRRRGRTPTPG+Y GLRT R R +S SYS RRS      S S S S +YSSDR RS
Sbjct: 148 VEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRS-----VSCSRSRSRSYSSDRGRS 207

Query: 233 RSHSPDRRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYS 292
            S S  RR RS+     YR    YS  R  SP  R++R   RS+SP  R   R R RSYS
Sbjct: 208 YSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYR--RRDRSRSYS 267

Query: 293 RSHSPYSRSP-TRRRDRSYSRSHSPYSRSPTRR-------RDRSYSPY------DYCSPD 352
           R+     RSP   RR RS SRS+SP  R+  R        RDRSYSP+       Y    
Sbjct: 268 RNCRARDRSPYYMRRYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRDRSYSPES 327

Query: 353 PYYRRHRDGSISRSVSPKARVSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRS 405
            YYRRHR  S+S SVSP      R  SRS SPR  R  SRS SR      S+   RS RS
Sbjct: 328 RYYRRHR--SVSGSVSP----GGRSMSRSISPRKGRKESRSKSRRHDRQSSMCHSRSARS 382

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy Swiss-Prot
Match: Q06A98 (Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-11
Identity = 82/222 (36.94%), Postives = 107/222 (48.20%), Query Frame = 0


Query: 88  PSSDVENPGNNLYVTGLSHRITRRELGKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSS 147
           P  DVE    +L V  L++R +   L + F   G V DV++  D +T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 148 NDEAERCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRYFG------LRTVRV 207
             +AE  +  ++ +VL+GR + V+ AR  R        R P P RY G       R+ R 
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 208 RR--RSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPDRRRRSNDSPYRYRSYSP 267
           RR  RSRS S  RS S S YSRS S S   S  RS S+S S  R +  + S  R RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRS- 185

Query: 268 YSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSP 295
                         RS SRS  P S+  ++ R RS S   SP
Sbjct: 186 ------------RSRSRSRSPPPASKRESKSRSRSKSPPKSP 213

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy Swiss-Prot
Match: Q3ZBT6 (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-11
Identity = 92/247 (37.25%), Postives = 109/247 (44.13%), Query Frame = 0


Query: 53  RSQMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVE------------------- 112
           RS+     RSR S    Y RS SRS S  RSRSRS S D                     
Sbjct: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGN 110

Query: 113 --NPGNN--LYVTGLSHRITRRELGKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSND 172
             NP  N  L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   + D
Sbjct: 111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170

Query: 173 EAERCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSY 232
           +A+   +  N   L+GR I V+ +  +R  TPTPG Y G  T    RR R Y  R     
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR-RDYYDR----- 230

Query: 233 SPYSRSLSCSSNYS-SDRSRSRSHSPDRRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRS 276
             Y R       YS S R         R  +  D  YR RS SPY    Y    YR  RS
Sbjct: 231 -GYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY----YSRGGYR-SRS 285

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy Swiss-Prot
Match: P62995 (Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-11
Identity = 92/247 (37.25%), Postives = 109/247 (44.13%), Query Frame = 0


Query: 53  RSQMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVE------------------- 112
           RS+     RSR S    Y RS SRS S  RSRSRS S D                     
Sbjct: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGN 110

Query: 113 --NPGNN--LYVTGLSHRITRRELGKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSND 172
             NP  N  L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   + D
Sbjct: 111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170

Query: 173 EAERCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSY 232
           +A+   +  N   L+GR I V+ +  +R  TPTPG Y G  T    RR R Y  R     
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR-RDYYDR----- 230

Query: 233 SPYSRSLSCSSNYS-SDRSRSRSHSPDRRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRS 276
             Y R       YS S R         R  +  D  YR RS SPY    Y    YR  RS
Sbjct: 231 -GYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY----YSRGGYR-SRS 285

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy Swiss-Prot
Match: P62996 (Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-11
Identity = 92/247 (37.25%), Postives = 109/247 (44.13%), Query Frame = 0


Query: 53  RSQMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVE------------------- 112
           RS+     RSR S    Y RS SRS S  RSRSRS S D                     
Sbjct: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGN 110

Query: 113 --NPGNN--LYVTGLSHRITRRELGKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSND 172
             NP  N  L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   + D
Sbjct: 111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170

Query: 173 EAERCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSY 232
           +A+   +  N   L+GR I V+ +  +R  TPTPG Y G  T    RR R Y  R     
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR-RDYYDR----- 230

Query: 233 SPYSRSLSCSSNYS-SDRSRSRSHSPDRRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRS 276
             Y R       YS S R         R  +  D  YR RS SPY    Y    YR  RS
Sbjct: 231 -GYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY----YSRGGYR-SRS 285

[Close]

BLAST of Cp4.1LG02g11480 vs. NCBI nr
Match: XP_023525007.1 (serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 712 bits (1837), Expect = 9.69e-257
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD
Sbjct: 121 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY
Sbjct: 181 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
           SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR
Sbjct: 241 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS
Sbjct: 301 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 360

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
           STPGCHKRGGYSGGSGSVVSRSVSPA
Sbjct: 361 STPGCHKRGGYSGGSGSVVSRSVSPA 386

[Close]

BLAST of Cp4.1LG02g11480 vs. NCBI nr
Match: XP_023525005.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 669 bits (1727), Expect = 2.70e-240
Identity = 367/386 (95.08%), Postives = 367/386 (95.08%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD
Sbjct: 121 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYS      
Sbjct: 181 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYS------ 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
                        RSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR
Sbjct: 241 -------------RSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS
Sbjct: 301 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 360

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
           STPGCHKRGGYSGGSGSVVSRSVSPA
Sbjct: 361 STPGCHKRGGYSGGSGSVVSRSVSPA 367

[Close]

BLAST of Cp4.1LG02g11480 vs. NCBI nr
Match: XP_022948988.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata] >XP_022948989.1 serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 641 bits (1653), Expect = 1.01e-228
Identity = 359/386 (93.01%), Postives = 365/386 (94.56%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTV VRRR RSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP+
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYS RRYDSPYYR HRSYSRSHSPCSRSPTRRRDRSYSRSHSP 
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPC 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
           SRSPTRRRDRSYSRSHSP SR PTRR DRSYSPYDYCSPD YYRRHRD S+SRSVSPKAR
Sbjct: 241 SRSPTRRRDRSYSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYS SYSPRH RSASRS+SRSRSYSRS+SPERSRR   HSHSI+PERRSSRSRS S
Sbjct: 301 VSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRS 360

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
            TP  HKRGGYSGGSGSV SRSVSPA
Sbjct: 361 HTPRHHKRGGYSGGSGSVASRSVSPA 386

[Close]

BLAST of Cp4.1LG02g11480 vs. NCBI nr
Match: XP_023525006.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 630 bits (1625), Expect = 4.51e-225
Identity = 348/386 (90.16%), Postives = 348/386 (90.16%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD
Sbjct: 121 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSR                 
Sbjct: 181 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSR----------------- 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
                                SPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR
Sbjct: 241 ---------------------SPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS
Sbjct: 301 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 348

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
           STPGCHKRGGYSGGSGSVVSRSVSPA
Sbjct: 361 STPGCHKRGGYSGGSGSVVSRSVSPA 348

[Close]

BLAST of Cp4.1LG02g11480 vs. NCBI nr
Match: XP_022948990.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 606 bits (1563), Expect = 2.50e-215
Identity = 343/386 (88.86%), Postives = 349/386 (90.41%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTV VRRR RSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP+
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYS RRYDSPYYR HRSYSRSHSPCSRSPTRRRDRSYS      
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYS------ 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
                        RSHSP SRSPTRRRDRSYSPYDYCSPD YYRRHRD S+SRSVSPKAR
Sbjct: 241 -------------RSHSPCSRSPTRRRDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYS SYSPRH RSASRS+SRSRSYSRS+SPERSRR   HSHSI+PERRSSRSRS S
Sbjct: 301 VSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRS 360

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
            TP  HKRGGYSGGSGSV SRSVSPA
Sbjct: 361 HTPRHHKRGGYSGGSGSVASRSVSPA 367

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy TrEMBL
Match: A0A6J1GAU6 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 641 bits (1653), Expect = 4.89e-229
Identity = 359/386 (93.01%), Postives = 365/386 (94.56%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTV VRRR RSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP+
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYS RRYDSPYYR HRSYSRSHSPCSRSPTRRRDRSYSRSHSP 
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPC 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
           SRSPTRRRDRSYSRSHSP SR PTRR DRSYSPYDYCSPD YYRRHRD S+SRSVSPKAR
Sbjct: 241 SRSPTRRRDRSYSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYS SYSPRH RSASRS+SRSRSYSRS+SPERSRR   HSHSI+PERRSSRSRS S
Sbjct: 301 VSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRS 360

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
            TP  HKRGGYSGGSGSV SRSVSPA
Sbjct: 361 HTPRHHKRGGYSGGSGSVASRSVSPA 386

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy TrEMBL
Match: A0A6J1GBG9 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 606 bits (1563), Expect = 1.21e-215
Identity = 343/386 (88.86%), Postives = 349/386 (90.41%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTV VRRR RSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP+
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYS RRYDSPYYR HRSYSRSHSPCSRSPTRRRDRSYS      
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYS------ 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
                        RSHSP SRSPTRRRDRSYSPYDYCSPD YYRRHRD S+SRSVSPKAR
Sbjct: 241 -------------RSHSPCSRSPTRRRDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYS SYSPRH RSASRS+SRSRSYSRS+SPERSRR   HSHSI+PERRSSRSRS S
Sbjct: 301 VSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRS 360

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
            TP  HKRGGYSGGSGSV SRSVSPA
Sbjct: 361 HTPRHHKRGGYSGGSGSVASRSVSPA 367

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy TrEMBL
Match: A0A6J1GAR1 (serine/arginine-rich splicing factor SR45a-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 602 bits (1552), Expect = 5.71e-214
Identity = 341/386 (88.34%), Postives = 347/386 (89.90%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTV VRRR RSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP+
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYS RRYDSPYYR HRSYSRSHSPCSRSPTRRRDRSYS      
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYS------ 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
                        RSHSP SR PTRR DRSYSPYDYCSPD YYRRHRD S+SRSVSPKAR
Sbjct: 241 -------------RSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYS SYSPRH RSASRS+SRSRSYSRS+SPERSRR   HSHSI+PERRSSRSRS S
Sbjct: 301 VSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRS 360

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
            TP  HKRGGYSGGSGSV SRSVSPA
Sbjct: 361 HTPRHHKRGGYSGGSGSVASRSVSPA 367

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 570 bits (1470), Expect = 8.50e-202
Identity = 325/386 (84.20%), Postives = 331/386 (85.75%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTV VRRR RSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP+
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYS RRYDSPYYR HRSYSRSHSPCSR                 
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSR----------------- 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
                                SPTRRRDRSYSPYDYCSPD YYRRHRD S+SRSVSPKAR
Sbjct: 241 ---------------------SPTRRRDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYS SYSPRH RSASRS+SRSRSYSRS+SPERSRR   HSHSI+PERRSSRSRS S
Sbjct: 301 VSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRS 348

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
            TP  HKRGGYSGGSGSV SRSVSPA
Sbjct: 361 HTPRHHKRGGYSGGSGSVASRSVSPA 348

[Close]

BLAST of Cp4.1LG02g11480 vs. ExPASy TrEMBL
Match: A0A6J1GAS3 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 566 bits (1459), Expect = 4.01e-200
Identity = 323/386 (83.68%), Postives = 329/386 (85.23%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 115
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 116 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 175
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 176 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 235
           RRGRTPTPGRYFGLRTV VRRR RSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP+
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 236 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 295
           RRRRSNDSPYRYRSYSPYS RRYDSPYYR HRSYSRSHSPCSR                 
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSR----------------- 240

Query: 296 SRSPTRRRDRSYSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKAR 355
                                 PTRR DRSYSPYDYCSPD YYRRHRD S+SRSVSPKAR
Sbjct: 241 ---------------------LPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKAR 300

Query: 356 VSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCS 415
           VSSRRYS SYSPRH RSASRS+SRSRSYSRS+SPERSRR   HSHSI+PERRSSRSRS S
Sbjct: 301 VSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRS 348

Query: 416 STPGCHKRGGYSGGSGSVVSRSVSPA 441
            TP  HKRGGYSGGSGSV SRSVSPA
Sbjct: 361 HTPRHHKRGGYSGGSGSVASRSVSPA 348

[Close]

BLAST of Cp4.1LG02g11480 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 5.2e-65
Identity = 204/369 (55.28%), Postives = 231/369 (62.60%), Query Frame = 0


Query: 53  RSQMSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRIT 112
           RS MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T
Sbjct: 28  RSPMSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVT 87

Query: 113 RRELGKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIIT 172
            R+L  HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+IT
Sbjct: 88  ERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVIT 147

Query: 173 VEKARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRS 232
           VEKARRRRGRTPTPG+Y GLRT R R +S SYS RRS      S S S S +YSSDR RS
Sbjct: 148 VEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRS-----VSCSRSRSRSYSSDRGRS 207

Query: 233 RSHSPDRRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYS 292
            S S  RR RS+     YR    YS  R  SP  R++R   RS+SP  R   R R RSYS
Sbjct: 208 YSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYR--RRDRSRSYS 267

Query: 293 RSHSPYSRSP-TRRRDRSYSRSHSPYSRSPTRR-------RDRSYSPY------DYCSPD 352
           R+     RSP   RR RS SRS+SP  R+  R        RDRSYSP+       Y    
Sbjct: 268 RNCRARDRSPYYMRRYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRDRSYSPES 327

Query: 353 PYYRRHRDGSISRSVSPKARVSSRRYSRSYSPRHCRSASRSYSRSRSYSRSISPERSRRS 405
            YYRRHR  S+S SVSP      R  SRS SPR  R  SRS SR      S+   RS RS
Sbjct: 328 RYYRRHR--SVSGSVSP----GGRSMSRSISPRKGRKESRSKSRRHDRQSSMCHSRSARS 382

[Close]

BLAST of Cp4.1LG02g11480 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.0 bits (380), Expect = 2.3e-36
Identity = 83/120 (69.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 56  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRE 115
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 116 LGKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 173
           L  HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of Cp4.1LG02g11480 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-35
Identity = 116/264 (43.94%), Postives = 137/264 (51.89%), Query Frame = 0


Query: 57  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGKH 116
           S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++L  H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 117 FSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARRR 176
           F+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE++RR+
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSRRK 150

Query: 177 RGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPDR 236
           R RTPTPG Y GL++                                       S   DR
Sbjct: 151 RPRTPTPGHYLGLKS---------------------------------------SRDSDR 210

Query: 237 RRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPYS 296
             RS+              R YD   YR  RS  R +SP     +RR      RS+SP+ 
Sbjct: 211 EGRSSRG------------RHYDRDDYRDRRSPRRDYSPRDERRSRR-----DRSYSPHG 238

Query: 297 RSPTRRRDRSYSRSHSPYSRSPTR 321
           RSP RR +R   RS   Y    +R
Sbjct: 271 RSPERRSERRSERSERRYEPRGSR 238

[Close]

BLAST of Cp4.1LG02g11480 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.9 bits (359), Expect = 6.2e-34
Identity = 116/265 (43.77%), Postives = 137/265 (51.70%), Query Frame = 0


Query: 57  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELGK 116
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++L  
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 117 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 176
           HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE++RR
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSRR 150

Query: 177 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 236
           +R RTPTPG Y GL++                                       S   D
Sbjct: 151 KRPRTPTPGHYLGLKS---------------------------------------SRDSD 210

Query: 237 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPY 296
           R  RS+              R YD   YR  RS  R +SP     +RR      RS+SP+
Sbjct: 211 REGRSSRG------------RHYDRDDYRDRRSPRRDYSPRDERRSRR-----DRSYSPH 239

Query: 297 SRSPTRRRDRSYSRSHSPYSRSPTR 321
            RSP RR +R   RS   Y    +R
Sbjct: 271 GRSPERRSERRSERSERRYEPRGSR 239

[Close]

BLAST of Cp4.1LG02g11480 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.9 bits (307), Expect = 6.6e-28
Identity = 73/117 (62.39%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 57  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELGK 116
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++L  
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 117 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 173
           HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g11480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	7.3e-64	55.28	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q06A98	9.3e-11	36.94	Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1	[more]
Q3ZBT6	9.3e-11	37.25	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1	[more]
P62995	9.3e-11	37.25	Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1	[more]
P62996	9.3e-11	37.25	Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1	[more]

BLAST of Cp4.1LG02g11480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525007.1	9.69e-257	100.00	serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita pepo subsp...	[more]
XP_023525005.1	2.70e-240	95.08	serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita pepo subsp...	[more]
XP_022948988.1	1.01e-228	93.01	serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata] ...	[more]
XP_023525006.1	4.51e-225	90.16	serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_022948990.1	2.50e-215	88.86	serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG02g11480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAU6	4.89e-229	93.01	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1GBG9	1.21e-215	88.86	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1GAR1	5.71e-214	88.34	serine/arginine-rich splicing factor SR45a-like isoform X3 OS=Cucurbita moschata...	[more]
A0A6J1GBJ2	8.50e-202	84.20	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]
A0A6J1GAS3	4.01e-200	83.68	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata...	[more]

BLAST of Cp4.1LG02g11480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	5.2e-65	55.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	2.3e-36	69.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	2.5e-35	43.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	6.2e-34	43.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	6.6e-28	62.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..171 e-value: 1.0E-19 score: 81.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..168 e-value: 1.7E-13 score: 50.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 97..175 score: 16.755964
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 51..181 e-value: 1.2E-26 score: 95.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..441
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 386..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..385
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..244
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 63..306
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 63..306
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 85..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g11480.1	Cp4.1LG02g11480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding