Cp4.1LG02g11030 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g11030
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG02: 8948748 .. 8951273 (-)
RNA-Seq Expression	Cp4.1LG02g11030
Synteny	Cp4.1LG02g11030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGCGATGAGCTGCTTCAACGCTGCCCCCACCGCCGCCGCCGCTGCTGCTGCTGCTAGCCCTCTATTGATGAATGGCTTTTCTATCTCACATGGCGCCGCTGTAAAATGCCTTCTTTCTCTTCTCAACCCCTCAGAAAACCTTGTTTGGTTCGCCCCAAATCCAAGCAATGCCCAGATTCCACTCGCCCATGTGTCGTTCAGTCCCTTTTCAGCCTCTCTTCTCGAGGGAACCTCTCGGAGGCCCTTTCTTACCTCGACCCATTGGCCCAAAGAGGCATACGCTTGCCCTCTAGCGCTTTCGTCCACCTCTTGCGACTCTGTGCCAAAGCCAAGTCTCTCAAAGGTGGTAAATGTATTCATCTGCATTTGAAACATACGGGGTTTAAACGCCCCACGACTATTGTAGCCAACCATTTGATTGGTATGTATTTCAAATGTGGCCATGAGATTGATGCACGTAAGGTGTTTGATAAAATGTCTGTGAGGAATTTGTACTCTTGGAATCATATGCTTGCTGGGTATGCTAAGTTGGGGAATGTATATCAAGCTAGGAAGTTGTTTGATGGAATGACGGAGAAGGATGTTGTTTCTTGGAATACCATGGTTCTTGCTTATGCTAAGAAAGGGTGTTTCGATGAAGTTGTTGGGTTATACAGAGACTTCAGGAGACTGGAGATGGGTCTCAATGAGTTTAGTTTTGCTGGTGTTTTGATTCTTTGTGTGAAGCTGAGGGAATTGCAGCTCACGAAGCAGGTTCATGGGCAGGTATTGGTTGTTGGATTTTTGTCTAATGTAGTGCTTTCTAGTTCAATAGTTGATGCATATGCAAAATGTGGAGAGATGGGATGTGCGCGGAAATTGTTTGATGAAATGCTTGTGAAAGATATCCTCGCGTGGACTACTATGGTATCTGGATATGCTAAATGGGGTGATATGAATTTGGCTAGCGAATTGTTTCACCAAATGCCTGAAAAGAATCCTGTCTCCTGGACAGCTTTAATATCAGGCTATGCAAGGAACGGTTTGGGGCACGACGCACTCGATTACTTCACAAAAATGATGATGTTTCGAATTCATCCCGACCAATATACATTTAGTAGTTGTCTCTGCGCATGTGCCGGTATTGCTGCACTGAAGCATGGTAAACAAGTACATGCGTATTTGATAAGAACGAACTTCAGATGCAACACAATAGTCGTCAGCTCTCTCATTGACATGTATTCAAAGTGTGGCATGTTAGAAGCAGGCTACCGTGTTTTTCACCTTATGGGAAATAAGCAGGATGTTGTATTGTGGAATACAATGATATCTTCCCTAGCTCAACATGGTCATGGGGAGAAAGCAATGCAGATGTTCAATGACATGGTTAAATCAGGATTGAAGCCTGATAGGATCACGTTCATCGTGATCCTTAGCGTGTGTAGTCATTCAGGGCTCGTGCGAGAGGGACATCGGTTTTTCAAGGCCATGACGTATGATCACAGCGTTCTCCCTGATCAAGAACACTATGCATGGTTAATTGATCTCTTGGGTCGAGCGGGATGTTTTAACGAGTTGGTAAACGAGCTAGAGAAGATGTCGTGTAAGCCGGATGATCGAGTATGGAATGCGTTACTTGGTGTGTGTAGAATGCATGGTAGTATGGTGCTAGGAAGAAAAGTGGGTGAGCATGTAATGGAGGTGGATCATCAATCTTGTGCAGCTCGTGAATCTCTTGCAAGTTTGTATGCTTTTCTAGGGAAATGGGAGTCAGTAGAAAAGGTGAGGGAAGAACTGGAAGAGAGATTGGTGAAGAAGGAGCGTGCAATGAGTTGGAGTGACATTGAAAATAAGGTACATTCTTTCATTGCAGATCACATTCATTGAAGGAAGATAGGCACATCCCATACAGAAGAACAATTTTCGATCATTGAAAAGAGGGTGTTAAGGTATTTGTTATTTTTGTTGGGATATTTCACACAAGTGATCTTACATATAGGATGATAAAATGCTCCATATTGAACCTTTGGGTCTTAATCCATATAATTTGTTTATTATCTCGCTATTAATCAATAATTATGGCCCGAGTTAGTTTCTGAGTTCATTTTTCGTGTTTAGTTTGTGCTATAAAATTTGGCCTTTGACCTATATTTCCATGATTGAAGCAAGAGGGAAAAGTCGCTAAGGGTGTCAGTGCCTCAAAATGCTTTTGCTCGTACCTTCGTCAGCAACGTAAAGTAGAGATGCCAATTTAACCTAAACAAAGAAGTAGAGGACGGAAGAGATTTTTCTATATTAACTTAGCAGAATCCTTATATATATATATATATATGGGAGTTGAACTGCTACGGAATAGGTCAACTTTTTAAACTGCTACTGAATCCATGGGCAGACAAGAGACAATACTGAATCCATGGGCAAACAAGAGACAATGTAGTAAACTGCTACTGAATTCATGGGCAGACAAGAGACAATGTAGTAAACTGCTACTGAATCTATGGGCAGACAAGAGACAATGTAAATCTCTCTATTACCTCTACTTCTA

mRNA sequence

GCTGCGATGAGCTGCTTCAACGCTGCCCCCACCGCCGCCGCCGCTGCTGCTGCTGCTAGCCCTCTATTGATGAATGGCTTTTCTATCTCACATGGCGCCGCTGTAAAATGCCTTCTTTCTCTTCTCAACCCCTCAGAAAACCTTGTTTGGTTCGCCCCAAATCCAAGCAATGCCCAGATTCCACTCGCCCATGTGTCGTTCAGTCCCTTTTCAGCCTCTCTTCTCGAGGGAACCTCTCGGAGGCCCTTTCTTACCTCGACCCATTGGCCCAAAGAGGCATACGCTTGCCCTCTAGCGCTTTCGTCCACCTCTTGCGACTCTGTGCCAAAGCCAAGTCTCTCAAAGGTGATGGGTCTCAATGAGTTTAGTTTTGCTGGTGTTTTGATTCTTTGTGTGAAGCTGAGGGAATTGCAGCTCACGAAGCAGAATCCTGTCTCCTGGACAGCTTTAATATCAGGCTATGCAAGGAACGGTTTGGGGCACGACGCACTCGATTACTTCACAAAAATGATGATGTTTCGAATTCATCCCGACCAATATACATTTAGTAGTTGTCTCTGCGCATGTGCCGGTATTGCTGCACTGAAGCATGGGAAATGGGAGTCAGTAGAAAAGGTGAGGGAAGAACTGGAAGAGAGATTGGTGAAGAAGGAGCGTGCAATGAGTTGGAGTGACATTGAAAATAAGATAGGCACATCCCATACAGAAGAACAATTTTCGATCATTGAAAAGAGGGTGTTAAGCAAGAGGGAAAAGTCGCTAAGGGTGTCAGTGCCTCAAAATGCTTTTGCTCGTACCTTCGTCAGCAACGTAAAGTAGAGATGCCAATTTAACCTAAACAAAGAAGTAGAGGACGGAAGAGATTTTTCTATATTAACTTAGCAGAATCCTTATATATATATATATATATGGGAGTTGAACTGCTACGGAATAGGTCAACTTTTTAAACTGCTACTGAATCCATGGGCAGACAAGAGACAATACTGAATCCATGGGCAAACAAGAGACAATGTAGTAAACTGCTACTGAATTCATGGGCAGACAAGAGACAATGTAGTAAACTGCTACTGAATCTATGGGCAGACAAGAGACAATGTAAATCTCTCTATTACCTCTACTTCTA

Coding sequence (CDS)

GCTGCGATGAGCTGCTTCAACGCTGCCCCCACCGCCGCCGCCGCTGCTGCTGCTGCTAGCCCTCTATTGATGAATGGCTTTTCTATCTCACATGGCGCCGCTGTAAAATGCCTTCTTTCTCTTCTCAACCCCTCAGAAAACCTTGTTTGGTTCGCCCCAAATCCAAGCAATGCCCAGATTCCACTCGCCCATGTGTCGTTCAGTCCCTTTTCAGCCTCTCTTCTCGAGGGAACCTCTCGGAGGCCCTTTCTTACCTCGACCCATTGGCCCAAAGAGGCATACGCTTGCCCTCTAGCGCTTTCGTCCACCTCTTGCGACTCTGTGCCAAAGCCAAGTCTCTCAAAGGTGATGGGTCTCAATGAGTTTAGTTTTGCTGGTGTTTTGATTCTTTGTGTGAAGCTGAGGGAATTGCAGCTCACGAAGCAGAATCCTGTCTCCTGGACAGCTTTAATATCAGGCTATGCAAGGAACGGTTTGGGGCACGACGCACTCGATTACTTCACAAAAATGATGATGTTTCGAATTCATCCCGACCAATATACATTTAGTAGTTGTCTCTGCGCATGTGCCGGTATTGCTGCACTGAAGCATGGGAAATGGGAGTCAGTAGAAAAGGTGAGGGAAGAACTGGAAGAGAGATTGGTGAAGAAGGAGCGTGCAATGAGTTGGAGTGACATTGAAAATAAGATAGGCACATCCCATACAGAAGAACAATTTTCGATCATTGAAAAGAGGGTGTTAAGCAAGAGGGAAAAGTCGCTAAGGGTGTCAGTGCCTCAAAATGCTTTTGCTCGTACCTTCGTCAGCAACGTAAAGTAG

Protein sequence

AAMSCFNAAPTAAAAAAAASPLLMNGFSISHGAAVKCLLSLLNPSENLVWFAPNPSNAQIPLAHVSFSPFSASLLEGTSRRPFLTSTHWPKEAYACPLALSSTSCDSVPKPSLSKVMGLNEFSFAGVLILCVKLRELQLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFSSCLCACAGIAALKHGKWESVEKVREELEERLVKKERAMSWSDIENKIGTSHTEEQFSIIEKRVLSKREKSLRVSVPQNAFARTFVSNVK

Homology

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy Swiss-Prot
Match: Q9SKQ4 (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-16
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 138 QLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFSSCLCACAGIAALKH 197
           ++ ++NPVSWTALI+GY R G G+ ALD F KM+   + P+Q+TFSSCLCA A IA+L+H
Sbjct: 270 EMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRH 329

Query: 198 GK 200
           GK
Sbjct: 330 GK 331

HSP 2 Score: 44.3 bits (103), Expect = 2.6e-03
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 197 HGKWESVEKVREELEERLVKKERAMSWSDIENKI 231
           HGKWE VEK+R  +++R V KE+A+SW +IE K+
Sbjct: 528 HGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKV 561

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy Swiss-Prot
Match: Q9SJK9 (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E73 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-10
Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 113 LSKVMGLNEFSFAGVLILCVKLRELQ--------LTKQNPVSWTALISGYARNGLGHDAL 172
           L  +  L + S+  ++  C+K+ E +          ++N V+WT +I+GY RNG G  AL
Sbjct: 263 LESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQAL 322

Query: 173 DYFTKMMMFRIHPDQYTFSSCLCACAGIAALKHGK 200
            +F +MM   +  D + + + L AC+G+A L HGK
Sbjct: 323 RFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGK 357

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy Swiss-Prot
Match: Q9LJI9 (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E80 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.2e-09
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 138 QLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFSSCLCACAGIAALKH 197
           ++ + + V W  L++GY R GLG + L+ F +M++  I PD+++ ++ L ACA + AL  
Sbjct: 177 EIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQ 236

Query: 198 GKW--ESVEKVR 208
           GKW  E V+K R
Sbjct: 237 GKWIHEFVKKKR 248

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 138 QLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFSSCLCACAGIAALKH 197
           ++ ++N VSW ++ISG+ RNG   DALD F +M    + PD +T  S L ACA + A + 
Sbjct: 217 EMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQ 276

Query: 198 GKWESVEKVREELE 212
           G+W     VR   E
Sbjct: 277 GRWIHEYIVRNRFE 290

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy Swiss-Prot
Match: Q9LFL5 (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-08
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 124 FAGVLILCVKLRELQLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFS 183
           F   + L  K++E ++ K + V+W+A ISGYA+ GLG++AL    +M+   I P++ T  
Sbjct: 311 FEDAVRLFEKMQEEKI-KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 370

Query: 184 SCLCACAGIAALKHGK 200
           S L  CA + AL HGK
Sbjct: 371 SVLSGCASVGALMHGK 385

[Close]

BLAST of Cp4.1LG02g11030 vs. NCBI nr
Match: XP_023523821.1 (pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143 bits (360), Expect = 6.21e-35
Identity = 83/157 (52.87%), Postives = 83/157 (52.87%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MGLNEFSFAGVLILCVKLRELQLTKQ                                  
Sbjct: 191 MGLNEFSFAGVLILCVKLRELQLTKQVHGQVLVVGFLSNVVLSSSIVDAYAKCGEMGCAR 250

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARNGLGHD
Sbjct: 251 KLFDEMLVKDILAWTTMVSGYAKWGDMNLASELFHQMPEKNPVSWTALISGYARNGLGHD 310

[Close]

BLAST of Cp4.1LG02g11030 vs. NCBI nr
Match: XP_022973379.1 (pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita maxima] >XP_022973380.1 pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita maxima])

HSP 1 Score: 140 bits (353), Expect = 5.89e-34
Identity = 81/157 (51.59%), Postives = 83/157 (52.87%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MGLNEFSF+GVLILCVKLRELQLTKQ                                  
Sbjct: 191 MGLNEFSFSGVLILCVKLRELQLTKQVHGQVLAVGFLSNVVLSSSIIDAYAKCGEMGCAR 250

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARNGLGH+
Sbjct: 251 KLFDEMLVKDILAWTTMVSGYAKWGDMNLASELFHQMPEKNPVSWTALISGYARNGLGHE 310

[Close]

BLAST of Cp4.1LG02g11030 vs. NCBI nr
Match: XP_022932441.1 (pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita moschata] >XP_022932442.1 pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita moschata])

HSP 1 Score: 140 bits (353), Expect = 6.44e-34
Identity = 82/157 (52.23%), Postives = 83/157 (52.87%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MGLNEFSFAGVLILCVKLRELQLTKQ                                  
Sbjct: 202 MGLNEFSFAGVLILCVKLRELQLTKQVHGQVLVVGFLSNVVLSSSIVDAYAKCGEMGCAR 261

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARNGLGHD
Sbjct: 262 RLFDEMLVKDILAWTTMVSGYAKWGDINFASELFHQMPEKNPVSWTALISGYARNGLGHD 321

[Close]

BLAST of Cp4.1LG02g11030 vs. NCBI nr
Match: KAG6607537.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138 bits (347), Expect = 1.10e-32
Identity = 81/157 (51.59%), Postives = 82/157 (52.23%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MGLNEFSFAGVLILCVKLRELQLTKQ                                  
Sbjct: 191 MGLNEFSFAGVLILCVKLRELQLTKQVHGQVLVVGFLSNVVLSSSIVDAYAKCGEMGCAR 250

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARNGLGHD
Sbjct: 251 RLFDEMLVKDILAWTTMVSGYAKWGDINFASELFHQMPEKNPVSWTALISGYARNGLGHD 310

[Close]

BLAST of Cp4.1LG02g11030 vs. NCBI nr
Match: KAG7037178.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136 bits (342), Expect = 2.00e-32
Identity = 80/157 (50.96%), Postives = 82/157 (52.23%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MGLNEFSFAGVLILCVKLRELQLTKQ                                  
Sbjct: 191 MGLNEFSFAGVLILCVKLRELQLTKQVHGQVLVVGFLSNVVLSSSIVDAYAKCGEMGCAR 250

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARNGLGHD
Sbjct: 251 RLFDEMLVKDIFAWTTMVSGYAKWGDINFASELFHQMPEKNPVSWTALISGYARNGLGHD 310

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy TrEMBL
Match: A0A6J1IEE4 (pentatricopeptide repeat-containing protein At2g21090-like OS=Cucurbita maxima OX=3661 GN=LOC111471937 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 2.85e-34
Identity = 81/157 (51.59%), Postives = 83/157 (52.87%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MGLNEFSF+GVLILCVKLRELQLTKQ                                  
Sbjct: 191 MGLNEFSFSGVLILCVKLRELQLTKQVHGQVLAVGFLSNVVLSSSIIDAYAKCGEMGCAR 250

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARNGLGH+
Sbjct: 251 KLFDEMLVKDILAWTTMVSGYAKWGDMNLASELFHQMPEKNPVSWTALISGYARNGLGHE 310

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy TrEMBL
Match: A0A6J1EWD5 (pentatricopeptide repeat-containing protein At2g21090-like OS=Cucurbita moschata OX=3662 GN=LOC111438861 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 3.12e-34
Identity = 82/157 (52.23%), Postives = 83/157 (52.87%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MGLNEFSFAGVLILCVKLRELQLTKQ                                  
Sbjct: 202 MGLNEFSFAGVLILCVKLRELQLTKQVHGQVLVVGFLSNVVLSSSIVDAYAKCGEMGCAR 261

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARNGLGHD
Sbjct: 262 RLFDEMLVKDILAWTTMVSGYAKWGDINFASELFHQMPEKNPVSWTALISGYARNGLGHD 321

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy TrEMBL
Match: A0A6J1C3S4 (pentatricopeptide repeat-containing protein At2g21090 OS=Momordica charantia OX=3673 GN=LOC111007990 PE=4 SV=1)

HSP 1 Score: 125 bits (314), Expect = 7.76e-29
Identity = 73/157 (46.50%), Postives = 78/157 (49.68%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MG NEFSFAG+LILCVK++ELQL KQ                                  
Sbjct: 187 MGFNEFSFAGLLILCVKIKELQLAKQVHGQVLVVGFLSNVVLSSSIVDAYAKCGEMGCAR 246

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARN LGH+
Sbjct: 247 RLFDEMPVKDILSWTTMVSGYAKWGDMNLASELFHQMPEKNPVSWTALISGYARNSLGHE 306

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy TrEMBL
Match: A0A6J1HUW8 (pentatricopeptide repeat-containing protein At2g21090-like OS=Cucurbita maxima OX=3661 GN=LOC111467037 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 2.77e-28
Identity = 72/157 (45.86%), Postives = 78/157 (49.68%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MG NEFSFAGVLILCVKL+ELQL KQ                                  
Sbjct: 191 MGFNEFSFAGVLILCVKLKELQLAKQVHTQVLVVGFLSNIVLSSSIVDAYAKCGEMECAK 250

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARN LGH+
Sbjct: 251 RLFDEMPVKDILAWTTMVSGYAKWGDMNLASGLFHQMPEKNPVSWTALISGYARNSLGHE 310

[Close]

BLAST of Cp4.1LG02g11030 vs. ExPASy TrEMBL
Match: A0A6J1HLP5 (pentatricopeptide repeat-containing protein At2g21090 OS=Cucurbita moschata OX=3662 GN=LOC111464099 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 7.07e-28
Identity = 71/157 (45.22%), Postives = 78/157 (49.68%), Query Frame = 0


Query: 117 MGLNEFSFAGVLILCVKLRELQLTKQ---------------------------------- 176
           MG NEFSFAG+LILCVKL+ELQL KQ                                  
Sbjct: 191 MGFNEFSFAGLLILCVKLKELQLAKQVHTQVLVVGFLSNIVLSSSIVDAYAKCGEMECAK 250

Query: 177 ----------------------------------------NPVSWTALISGYARNGLGHD 199
                                                   NPVSWTALISGYARN LGH+
Sbjct: 251 RLFDEMPVKDILAWTTMVSGYAKWGDMNLASGLFHQMPEKNPVSWTALISGYARNSLGHE 310

[Close]

BLAST of Cp4.1LG02g11030 vs. TAIR 10
Match: AT2G21090.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-17
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 138 QLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFSSCLCACAGIAALKH 197
           ++ ++NPVSWTALI+GY R G G+ ALD F KM+   + P+Q+TFSSCLCA A IA+L+H
Sbjct: 270 EMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRH 329

Query: 198 GK 200
           GK
Sbjct: 330 GK 331

HSP 2 Score: 44.3 bits (103), Expect = 1.8e-04
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 197 HGKWESVEKVREELEERLVKKERAMSWSDIENKI 231
           HGKWE VEK+R  +++R V KE+A+SW +IE K+
Sbjct: 528 HGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKV 561

[Close]

BLAST of Cp4.1LG02g11030 vs. TAIR 10
Match: AT2G36980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-11
Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 113 LSKVMGLNEFSFAGVLILCVKLRELQ--------LTKQNPVSWTALISGYARNGLGHDAL 172
           L  +  L + S+  ++  C+K+ E +          ++N V+WT +I+GY RNG G  AL
Sbjct: 263 LESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQAL 322

Query: 173 DYFTKMMMFRIHPDQYTFSSCLCACAGIAALKHGK 200
            +F +MM   +  D + + + L AC+G+A L HGK
Sbjct: 323 RFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGK 357

[Close]

BLAST of Cp4.1LG02g11030 vs. TAIR 10
Match: AT3G28660.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 6.5e-10
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 138 QLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFSSCLCACAGIAALKH 197
           ++ + + V W  L++GY R GLG + L+ F +M++  I PD+++ ++ L ACA + AL  
Sbjct: 177 EIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQ 236

Query: 198 GKW--ESVEKVR 208
           GKW  E V+K R
Sbjct: 237 GKWIHEFVKKKR 248

[Close]

BLAST of Cp4.1LG02g11030 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 8.5e-10
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 138 QLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFSSCLCACAGIAALKH 197
           ++ ++N VSW ++ISG+ RNG   DALD F +M    + PD +T  S L ACA + A + 
Sbjct: 217 EMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQ 276

Query: 198 GKWESVEKVREELE 212
           G+W     VR   E
Sbjct: 277 GRWIHEYIVRNRFE 290

[Close]

BLAST of Cp4.1LG02g11030 vs. TAIR 10
Match: AT5G16860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-09
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 124 FAGVLILCVKLRELQLTKQNPVSWTALISGYARNGLGHDALDYFTKMMMFRIHPDQYTFS 183
           F   + L  K++E ++ K + V+W+A ISGYA+ GLG++AL    +M+   I P++ T  
Sbjct: 311 FEDAVRLFEKMQEEKI-KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 370

Query: 184 SCLCACAGIAALKHGK 200
           S L  CA + AL HGK
Sbjct: 371 SVLSGCASVGALMHGK 385

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g11030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKQ4	2.7e-16	59.68	Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX...	[more]
Q9SJK9	3.7e-10	33.68	Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidop...	[more]
Q9LJI9	9.2e-09	38.89	Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana OX...	[more]
Q9SJG6	1.2e-08	40.54	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]
Q9LFL5	2.0e-08	40.79	Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG02g11030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523821.1	6.21e-35	52.87	pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita pepo subsp...	[more]
XP_022973379.1	5.89e-34	51.59	pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita maxima] >X...	[more]
XP_022932441.1	6.44e-34	52.23	pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita moschata] ...	[more]
KAG6607537.1	1.10e-32	51.59	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG7037178.1	2.00e-32	50.96	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Cp4.1LG02g11030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEE4	2.85e-34	51.59	pentatricopeptide repeat-containing protein At2g21090-like OS=Cucurbita maxima O...	[more]
A0A6J1EWD5	3.12e-34	52.23	pentatricopeptide repeat-containing protein At2g21090-like OS=Cucurbita moschata...	[more]
A0A6J1C3S4	7.76e-29	46.50	pentatricopeptide repeat-containing protein At2g21090 OS=Momordica charantia OX=...	[more]
A0A6J1HUW8	2.77e-28	45.86	pentatricopeptide repeat-containing protein At2g21090-like OS=Cucurbita maxima O...	[more]
A0A6J1HLP5	7.07e-28	45.22	pentatricopeptide repeat-containing protein At2g21090 OS=Cucurbita moschata OX=3...	[more]

BLAST of Cp4.1LG02g11030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21090.1	1.9e-17	59.68	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G36980.1	2.6e-11	33.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G28660.1	6.5e-10	38.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G42920.1	8.5e-10	40.54	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G16860.1	1.5e-09	40.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 200..220
None	No IPR available	PANTHER	PTHR47926:SF136	BNAA04G11950D PROTEIN	coord: 135..199
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 135..199
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 143..190 e-value: 3.5E-9 score: 36.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 145..178 e-value: 1.1E-7 score: 29.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 143..177 score: 10.906551
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 117..261 e-value: 9.4E-14 score: 53.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g11030.1	Cp4.1LG02g11030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding