Cp4.1LG02g10910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g10910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionethylene-responsive transcription factor ERF022-like
LocationCp4.1LG02: 9117499 .. 9118225 (-)
RNA-Seq ExpressionCp4.1LG02g10910
SyntenyCp4.1LG02g10910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGAATTCGTGTAGCTACTCGAGTAAGACACCCAACCTTAACCTTATAGAAAAATAAAAATTAGAAAAGAGACAGTAAAACCCGTGTCATATTTTGACCCATGCAACGGAAAAAAAGACAAGACAAAACGTGCGTGTGTTCCAAATGACAGCATGTTTCAACTTCATTCTAGCAGCTACCTCGAAACCGCACTCTCATGATCCACAAATTTGTCCCTTTCACTCTATTTAAACACCTCAAAATCCCCACACTCTCAGAAAAAAAAAATACTCACTTTTAACCCTTTTTTTAAATTTTATTTAATTCCCATGGAACCCACTTATAGAGGCGTTCGTAAGCGCAAATGGGGGAAATGGGTCTCGGAAATCCGCCAACCCGGCAAAAAAACCCGAATCTGGCTCGGCAGTTACGACTTCCCGGCGATGGCCGCTGCCGCATACGACGTCGCCGCACTCCACCTCCGTGGGCGTAACGCCCAGCTCAACTTCCCCGAGCTGGCCGAGACCTTCCCCCGGCCTGAGAGTTCGAGGGCAGAGGACATTCAGAGTGCGGCGCAGATGGCTGCATTGCGTATGAGGAACCCGGTCGGGGCAGCGCCAGTTAGAGTGGGGCTGTCGGAGAGTGAGATACAGGCGATAAATGAGTCGCCGTTGGATTCGCCGAGGACAATGTGGATGCAGATGGCGGCGGAGGCGGAGGCAGTTTGTTTGGAGGAAGAGCCG

mRNA sequence

ATGACTACTCGAAGTGCGGCGCAGATGGCTGCATTGCGTATGAGGAACCCGGTCGGGGCAGCGCCAGTTAGAGTGGGGCTGTCGGAGAGTGAGATACAGGCGATAAATGAGTCGCCGTTGGATTCGCCGAGGACAATGTGGATGCAGATGGCGGCGGAGGCGGAGGCAGTTTGTTTGGAGGAAGAGCCG

Coding sequence (CDS)

ATGACTACTCGAAGTGCGGCGCAGATGGCTGCATTGCGTATGAGGAACCCGGTCGGGGCAGCGCCAGTTAGAGTGGGGCTGTCGGAGAGTGAGATACAGGCGATAAATGAGTCGCCGTTGGATTCGCCGAGGACAATGTGGATGCAGATGGCGGCGGAGGCGGAGGCAGTTTGTTTGGAGGAAGAGCCG

Protein sequence

MTTRSAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEEP
Homology
BLAST of Cp4.1LG02g10910 vs. ExPASy Swiss-Prot
Match: Q9LQ28 (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana OX=3702 GN=ERF022 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-04
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 4   RSAAQMAAL-----RMRNPV---GAAPVRVGLSESEIQAINESPLDSPRTMWMQ 50
           ++AAQ AAL     R+  P    G    RVGLS  +IQAINESPLDSPR  WMQ
Sbjct: 94  QAAAQDAALMFKPGRLSEPALESGQGLSRVGLSPDQIQAINESPLDSPRMGWMQ 147

BLAST of Cp4.1LG02g10910 vs. NCBI nr
Match: XP_023525910.1 (ethylene-responsive transcription factor ERF022-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114 bits (285), Expect = 1.59e-30
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 5   SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEEP 63
           SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEEP
Sbjct: 80  SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEEP 138

BLAST of Cp4.1LG02g10910 vs. NCBI nr
Match: KAG7037163.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111 bits (278), Expect = 1.84e-29
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 5   SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 62
           SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE
Sbjct: 80  SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 137

BLAST of Cp4.1LG02g10910 vs. NCBI nr
Match: KAG6607516.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (274), Expect = 7.43e-29
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 5   SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 62
           SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMA EAEAVCLEEE
Sbjct: 80  SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAVEAEAVCLEEE 137

BLAST of Cp4.1LG02g10910 vs. NCBI nr
Match: XP_022949265.1 (ethylene-responsive transcription factor ERF022-like [Cucurbita moschata])

HSP 1 Score: 109 bits (273), Expect = 1.05e-28
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 5   SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 62
           SAAQMAALRMRNPVGAAP RVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE
Sbjct: 80  SAAQMAALRMRNPVGAAPFRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 137

BLAST of Cp4.1LG02g10910 vs. NCBI nr
Match: XP_022973437.1 (ethylene-responsive transcription factor ERF022-like [Cucurbita maxima])

HSP 1 Score: 102 bits (253), Expect = 1.05e-25
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0

Query: 5   SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 62
           SAAQMAAL+MRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEA  VCLEEE
Sbjct: 80  SAAQMAALQMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEA--VCLEEE 135

BLAST of Cp4.1LG02g10910 vs. ExPASy TrEMBL
Match: A0A6J1GCA4 (ethylene-responsive transcription factor ERF022-like OS=Cucurbita moschata OX=3662 GN=LOC111452674 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 5.10e-29
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 5   SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 62
           SAAQMAALRMRNPVGAAP RVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE
Sbjct: 80  SAAQMAALRMRNPVGAAPFRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 137

BLAST of Cp4.1LG02g10910 vs. ExPASy TrEMBL
Match: A0A6J1I7I6 (ethylene-responsive transcription factor ERF022-like OS=Cucurbita maxima OX=3661 GN=LOC111471982 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 5.06e-26
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0

Query: 5   SAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEE 62
           SAAQMAAL+MRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEA  VCLEEE
Sbjct: 80  SAAQMAALQMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEA--VCLEEE 135

BLAST of Cp4.1LG02g10910 vs. ExPASy TrEMBL
Match: A0A6J1EBQ6 (ethylene-responsive transcription factor ERF022-like OS=Cucurbita moschata OX=3662 GN=LOC111432747 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.11e-12
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 5   SAAQMAALRMRN---PVGA----APVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAV 61
           +AA MAALR+ N   P  A    APVR+GLS S+IQAINESPLDSP TMWMQMAAEA  +
Sbjct: 81  AAAHMAALRLANTKPPPAAQHPPAPVRIGLSPSQIQAINESPLDSP-TMWMQMAAEA--L 140

BLAST of Cp4.1LG02g10910 vs. ExPASy TrEMBL
Match: A0A1S3CAN7 (ethylene-responsive transcription factor ERF022-like OS=Cucumis melo OX=3656 GN=LOC103498680 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.48e-12
Identity = 40/54 (74.07%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 5   SAAQMAALRMRN----PVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEA 54
           +AA MAALR  N    P   APVRVGLS S+IQAINESPLDSP TMWMQMAAEA
Sbjct: 80  AAAHMAALRFANTCKPPEPPAPVRVGLSPSQIQAINESPLDSP-TMWMQMAAEA 132

BLAST of Cp4.1LG02g10910 vs. ExPASy TrEMBL
Match: A0A6J1IA08 (ethylene-responsive transcription factor ERF022-like OS=Cucurbita maxima OX=3661 GN=LOC111472569 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.45e-11
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 5   SAAQMAALRMRN---PVGA----APVRVGLSESEIQAINESPLDSPRTMWMQMAAEA 54
           +AA MAALR+ N   P  A    APVR+GLS S+IQAINESPLDSP TMWMQMAAEA
Sbjct: 81  AAAHMAALRLANTKPPPAAQHPPAPVRIGLSPSQIQAINESPLDSP-TMWMQMAAEA 136

BLAST of Cp4.1LG02g10910 vs. TAIR 10
Match: AT1G33760.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.1e-05
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 4   RSAAQMAAL-----RMRNPV---GAAPVRVGLSESEIQAINESPLDSPRTMWMQ 50
           ++AAQ AAL     R+  P    G    RVGLS  +IQAINESPLDSPR  WMQ
Sbjct: 94  QAAAQDAALMFKPGRLSEPALESGQGLSRVGLSPDQIQAINESPLDSPRMGWMQ 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LQ281.6e-0455.56Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
XP_023525910.11.59e-30100.00ethylene-responsive transcription factor ERF022-like [Cucurbita pepo subsp. pepo... [more]
KAG7037163.11.84e-29100.00Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp.... [more]
KAG6607516.17.43e-2998.28Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp.... [more]
XP_022949265.11.05e-2898.28ethylene-responsive transcription factor ERF022-like [Cucurbita moschata][more]
XP_022973437.11.05e-2594.83ethylene-responsive transcription factor ERF022-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1GCA45.10e-2998.28ethylene-responsive transcription factor ERF022-like OS=Cucurbita moschata OX=36... [more]
A0A6J1I7I65.06e-2694.83ethylene-responsive transcription factor ERF022-like OS=Cucurbita maxima OX=3661... [more]
A0A6J1EBQ63.11e-1267.19ethylene-responsive transcription factor ERF022-like OS=Cucurbita moschata OX=36... [more]
A0A1S3CAN74.48e-1274.07ethylene-responsive transcription factor ERF022-like OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1IA083.45e-1170.18ethylene-responsive transcription factor ERF022-like OS=Cucurbita maxima OX=3661... [more]
Match NameE-valueIdentityDescription
AT1G33760.11.1e-0555.56Integrase-type DNA-binding superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g10910.1Cp4.1LG02g10910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity