Cp4.1LG02g10870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g10870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG02: 9151344 .. 9154212 (-)
RNA-Seq ExpressionCp4.1LG02g10870
SyntenyCp4.1LG02g10870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTTCGTCCTCGTTCACTCTGTCCCTTCATCTTCACCCTTTCCCTCCAAATCCTCTCGCCGTCGCCTTCGCCGCCGCTAATTCCAATTCTGGCCACCGACTGTCCCGAATCAAAACCTCGACACAGACACTGACCGATACACCGCCCTTAAGAAACAAAGTAGTTGCCAAATTTCAGAACAGAAAACGCCCAGTTTTTGCTGAGAGAGATGCTTTTCCTGAATCTTTACCACTTCACACCAAGAACCCACATGCCATTTACAAGGATATTCAAAGATTTGCGCGCCAAAATAAGCTCAAAGAGGCACTTACGATTATGGACTATTTGGATCAACGAGGCATCCCAGTTAATGCGACTACATTTTCTTCTCTTATTACTGCTTGCGTTAGAGCCAAATCTTTGGCTAACGCTAAACAGGTTCACGCTCATATTCGGATAAATGGACTTGAAAACAATGAATTTTTGCGTACGAGGCTTGTTCATATGTATACTGCTTGTGGGTCTTTGGAAGATGCACAGAAGCTATTTGATGAAAGTTCTAGCAGAAGTGTTTATCCTTGGAATGCGTTGCTTAGAGGCACTGTAATGGCAGGGCGGCAGGATTACCGTAGCATACTCTCGACATATGCAGAAATGCGAAGATTGGGGGTTGAATTGAACGTTTACTCTTTTGCTAATATCATTAAGAGCTTTGCAGGTGCATCGGCGCTTACCCAGGGGCTTAAGGCCCATGCCCTTTTGATTAAAAATGGATTGGTTGGCAGTTCAATTCTTGGGACAACTTTGATTGATATGTACTTCAAATGTGGTAAGATCAAGCTTGCCCGCCAGATGTTCGATGAAATTACTGAGAGAGATATTGTGGTTTGGGGATCAATGATTGCTGGTTTTGCTCACAATAGACTTCAAAGGGAAGCTTTGGAATATACAAGAAGGATGATAGACGACGGAATTAGACCGAATTCGGTCATACTGACATCGATTCTTCCTGTTATTGGAGACGTCGGGGCTAGGAGATTAGGCCAGGAAGTTCATGCTTTTGTTATAAAGACAAAGAATTATTCAAGGCTGATATATATTCAATCTGCTTTGATTGATATGTATTGCAAATGTGGAGACATTGGTTTGGGCAGAGCGGTTTTTTATGGTTCCAAGGAGAGGAATGCTATCTGTTGGACTGCTTTGATGTCTGGTTATGCTTTAAATGGCAGGCTAGAGCAAGCTGTAAGATCAGTCATTTGGATGCAGCAGGAAGGATTTAGACCAGACGTCGTTACGGTTGCTACAATTCTTCCAGTTTGCGCCAAGTTGAGGGCTCTCGAACCCGGAAAGGAGATTCATGCATACGCTTTGAAGAACTACTTCCTACCAAATGTATCCATTGTTTCATCCTTGATGGTAATGTATTCAAAATGTGGAGTAATGGACTATTCTCTAAAGCTTTTCAACGCCATGGAGCAAAGAAATGTGATCTTATGGACAACAATGATTGATTCCTACATAGAAAATCAGTGTCTGTATGAAGCTATTGATATATTCAGAGTGATGCAGCTATCAAAGCATCGACCAGACACTGTAACCATGTCAAGAATCCTCTATGTATGCAGTGAACTAAAACTGTTGAAGATGGGGAAGGAGATACATGGGCAAGTTTTGAAGAGGAACTTCGAGTCAGTCCATTTCGTTTCGTCCGAACTCGTGAAGCTATATGGGAAATGTGGAGCTGTGAAAATGGCAAAAATGGTGTTTGAAGCAGTCCCTGTAAAGGGGGCAATGACATGGACTGCCATTATTGAAGCTTATGGAAACAATGGAGAGTTACAGGAAGCAATCCATTTGTTTGATCAAATGAGATCCTCTGGTTTCACTCCAAACCATTTCACTTTCAAAGTGGTTTTGTCTGTTTGTAATGAAGGTGGTTTCGTTGATGATGCTCTGCGCATCTTCAAGCTGATGACTGTTACGTATAAGATTAAGGCATCTGAAGAACATTACTCGTTCGTCATTGCGATTCTAACTCGGTTTGGTCGAATTGAGGAGGCCAAAAGGTATGAACAAATGAGTTCTTCATTATCATGAGTTTGAGATTTGTTCATAATTGAGCTCCCTGATATGTATATATTGTATGTGTTCACCTGTTTGTGTATATTTCTTTAGTTTTGGAGATTTGAAGGATAAATCTTCCAACTTTGGATCAATTTGGTTTCTTTGAGATTGAACTTTTGAGCACTAGGGAGGTAATAGGCTCCTTTATTCACTAGGCTATATTCAATGAGCTAGCTCGGATCAATCTTTGTATTCAATGAGCTATGCTCGGATCGATCTTTGTATTCAATGAGCTAGCTCGGATCGATCTTTGTATTCCATGAGCTATGCTCTGATCGATGTTTGTTTTGTTTCATTTTTATTAATAATGAATGAGTTTCCTAGTATTGATTAAAAGCAACCAAAATAGCACCAATTGTAACAATTATGGAATATAATCATATTTAGTATTGTTTATGAGTGATCGAGGAAAGCCCATTGTTTGGTGATATCAACCCAAGCCCCTTGCAGTTTAGAGTAATGGGTTAACACATTTTCGCTTTCGCTCTGCAACTCACAACACACTTCGAGAGACTCCCGAGAGAAGAGAGGAGCATACACCGACAGATCTAAGTCGCCGACACGCTTCGATCCAGGGCTTTAGTAGGTTGTAGCGACACAAATGCTTTAGGAGTGCTCTCGGTGTTGTTGTGCTAGTGATTGGTTAACGAACAGTGGCCTAAATCGGAGTGAGGTTGTCGGAGTGCCAATCAGAGAAGTGCGGAAGTTAGGGCAGCGGTTTCAGAAGGCGGGTGGAGAAGACGAATTTCTCCGGTGA

mRNA sequence

ATGGAAATTTCGTCCTCGTTCACTCTGTCCCTTCATCTTCACCCTTTCCCTCCAAATCCTCTCGCCGTCGCCTTCGCCGCCGCTAATTCCAATTCTGGCCACCGACTGTCCCGAATCAAAACCTCGACACAGACACTGACCGATACACCGCCCTTAAGAAACAAAGTAGTTGCCAAATTTCAGAACAGAAAACGCCCAGTTTTTGCTGAGAGAGATGCTTTTCCTGAATCTTTACCACTTCACACCAAGAACCCACATGCCATTTACAAGGATATTCAAAGATTTGCGCGCCAAAATAAGCTCAAAGAGGCACTTACGATTATGGACTATTTGGATCAACGAGGCATCCCAGTTAATGCGACTACATTTTCTTCTCTTATTACTGCTTGCGTTAGAGCCAAATCTTTGGCTAACGCTAAACAGGTTCACGCTCATATTCGGATAAATGGACTTGAAAACAATGAATTTTTGCGTACGAGGCTTGTTCATATGTATACTGCTTGTGGGTCTTTGGAAGATGCACAGAAGCTATTTGATGAAAGTTCTAGCAGAAGTGTTTATCCTTGGAATGCGTTGCTTAGAGGCACTGTAATGGCAGGGCGGCAGGATTACCGTAGCATACTCTCGACATATGCAGAAATGCGAAGATTGGGGGTTGAATTGAACGTTTACTCTTTTGCTAATATCATTAAGAGCTTTGCAGACGACGGAATTAGACCGAATTCGGTCATACTGACATCGATTCTTCCTGTTATTGGAGACGTCGGGGCTAGGAGATTAGGCCAGGAAGTTCATGCTTTTGTTATAAAGACAAAGAATTATTCAAGGCTGATATATATTCAATCTGCTTTGATTGATATGTATTGCAAATGTGGAGACATTGGTTTGGGCAGAGCGGTTTTTTATGGTTCCAAGGAGAGGAATGCTATCTGTTGGACTGCTTTGATGTCTGGTTATGCTTTAAATGGCAGGCTAGAGCAAGCTGTAAGATCAGTCATTTGGATGCAGCAGGAAGGATTTAGACCAGACGTCGTTACGGTTGCTACAATTCTTCCAGTTTGCGCCAAGTTGAGGGCTCTCGAACCCGGAAAGGAGATTCATGCATACGCTTTGAAGAACTACTTCCTACCAAATGTATCCATTGTTTCATCCTTGATGGTAATGTATTCAAAATGTGGAGTAATGGACTATTCTCTAAAGCTTTTCAACGCCATGGAGCAAAGAAATGTGATCTTATGGACAACAATGATTGATTCCTACATAGAAAATCAGTGTCTGTATGAAGCTATTGATATATTCAGAGTGATGCAGCTATCAAAGCATCGACCAGACACTGTAACCATGTCAAGAATCCTCTATGTATGCAGTGAACTAAAACTGTTGAAGATGGGGAAGGAGATACATGGGCAAGTTTTGAAGAGGAACTTCGAGTCAGTCCATTTCGTTTCGTCCGAACTCGTGAAGCTATATGGGAAATGTGGAGCTGTGAAAATGGCAAAAATGGTGTTTGAAGCAGTCCCTGTAAAGGGGGCAATGACATGGACTGCCATTATTGAAGCTTATGGAAACAATGGAGAGTTACAGGAAGCAATCCATTTGTTTGATCAAATGAGATCCTCTGGTTTCACTCCAAACCATTTCACTTTCAAAGTGGTTTTGTCTGTTTGTAATGAAGGTGGTTTCGTTGATGATGCTCTGCGCATCTTCAAGCTGATGACTGTTACGTATAAGATTAAGGCATCTGAAGAACATTACTCGTTCGTCATTGCGATTCTAACTCGGTTTGGTCGAATTGAGGAGGCCAAAAGTGATTGGTTAACGAACAGTGGCCTAAATCGGAGTGAGGTTGTCGGAGTGCCAATCAGAGAAGTGCGGAAGTTAGGGCAGCGGTTTCAGAAGGCGGGTGGAGAAGACGAATTTCTCCGGTGA

Coding sequence (CDS)

ATGGAAATTTCGTCCTCGTTCACTCTGTCCCTTCATCTTCACCCTTTCCCTCCAAATCCTCTCGCCGTCGCCTTCGCCGCCGCTAATTCCAATTCTGGCCACCGACTGTCCCGAATCAAAACCTCGACACAGACACTGACCGATACACCGCCCTTAAGAAACAAAGTAGTTGCCAAATTTCAGAACAGAAAACGCCCAGTTTTTGCTGAGAGAGATGCTTTTCCTGAATCTTTACCACTTCACACCAAGAACCCACATGCCATTTACAAGGATATTCAAAGATTTGCGCGCCAAAATAAGCTCAAAGAGGCACTTACGATTATGGACTATTTGGATCAACGAGGCATCCCAGTTAATGCGACTACATTTTCTTCTCTTATTACTGCTTGCGTTAGAGCCAAATCTTTGGCTAACGCTAAACAGGTTCACGCTCATATTCGGATAAATGGACTTGAAAACAATGAATTTTTGCGTACGAGGCTTGTTCATATGTATACTGCTTGTGGGTCTTTGGAAGATGCACAGAAGCTATTTGATGAAAGTTCTAGCAGAAGTGTTTATCCTTGGAATGCGTTGCTTAGAGGCACTGTAATGGCAGGGCGGCAGGATTACCGTAGCATACTCTCGACATATGCAGAAATGCGAAGATTGGGGGTTGAATTGAACGTTTACTCTTTTGCTAATATCATTAAGAGCTTTGCAGACGACGGAATTAGACCGAATTCGGTCATACTGACATCGATTCTTCCTGTTATTGGAGACGTCGGGGCTAGGAGATTAGGCCAGGAAGTTCATGCTTTTGTTATAAAGACAAAGAATTATTCAAGGCTGATATATATTCAATCTGCTTTGATTGATATGTATTGCAAATGTGGAGACATTGGTTTGGGCAGAGCGGTTTTTTATGGTTCCAAGGAGAGGAATGCTATCTGTTGGACTGCTTTGATGTCTGGTTATGCTTTAAATGGCAGGCTAGAGCAAGCTGTAAGATCAGTCATTTGGATGCAGCAGGAAGGATTTAGACCAGACGTCGTTACGGTTGCTACAATTCTTCCAGTTTGCGCCAAGTTGAGGGCTCTCGAACCCGGAAAGGAGATTCATGCATACGCTTTGAAGAACTACTTCCTACCAAATGTATCCATTGTTTCATCCTTGATGGTAATGTATTCAAAATGTGGAGTAATGGACTATTCTCTAAAGCTTTTCAACGCCATGGAGCAAAGAAATGTGATCTTATGGACAACAATGATTGATTCCTACATAGAAAATCAGTGTCTGTATGAAGCTATTGATATATTCAGAGTGATGCAGCTATCAAAGCATCGACCAGACACTGTAACCATGTCAAGAATCCTCTATGTATGCAGTGAACTAAAACTGTTGAAGATGGGGAAGGAGATACATGGGCAAGTTTTGAAGAGGAACTTCGAGTCAGTCCATTTCGTTTCGTCCGAACTCGTGAAGCTATATGGGAAATGTGGAGCTGTGAAAATGGCAAAAATGGTGTTTGAAGCAGTCCCTGTAAAGGGGGCAATGACATGGACTGCCATTATTGAAGCTTATGGAAACAATGGAGAGTTACAGGAAGCAATCCATTTGTTTGATCAAATGAGATCCTCTGGTTTCACTCCAAACCATTTCACTTTCAAAGTGGTTTTGTCTGTTTGTAATGAAGGTGGTTTCGTTGATGATGCTCTGCGCATCTTCAAGCTGATGACTGTTACGTATAAGATTAAGGCATCTGAAGAACATTACTCGTTCGTCATTGCGATTCTAACTCGGTTTGGTCGAATTGAGGAGGCCAAAAGTGATTGGTTAACGAACAGTGGCCTAAATCGGAGTGAGGTTGTCGGAGTGCCAATCAGAGAAGTGCGGAAGTTAGGGCAGCGGTTTCAGAAGGCGGGTGGAGAAGACGAATTTCTCCGGTGA

Protein sequence

MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNATTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFADDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQEGFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYSLKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKIKASEEHYSFVIAILTRFGRIEEAKSDWLTNSGLNRSEVVGVPIREVRKLGQRFQKAGGEDEFLR
Homology
[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy Swiss-Prot
Match: Q9C9I3 (Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A3 PE=2 SV=1)

HSP 1 Score: 721.1 bits (1860), Expect = 1.1e-206
Identity = 364/666 (54.65%), Postives = 464/666 (69.67%), Query Frame = 0 

Query: 20  PLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLP 79
           P +++   + ++  HR    K      +   P R +  +    +K   F ERDAFP SLP
Sbjct: 13  PASLSVTTSLNHRPHRSD--KDGAPAKSPIRPSRTRRPSTSPAKKPKPFRERDAFPSSLP 72

Query: 80  LHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNATTFSSLITACVRAKSLANA 139
           LH+KNP+ I++DIQ FARQN L+ ALTI+DYL+QRGIPVNATTFS+L+ ACVR KSL + 
Sbjct: 73  LHSKNPYIIHRDIQIFARQNNLEVALTILDYLEQRGIPVNATTFSALLEACVRRKSLLHG 132

Query: 140 KQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYPWNALLRGTVMA 199
           KQVH HIRINGLE+NEFLRT+LVHMYTACGS++DAQK+FDES+S +VY WNALLRGTV++
Sbjct: 133 KQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFDESTSSNVYSWNALLRGTVIS 192

Query: 200 GRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------------------------- 259
           G++ Y+ +LST+ EMR LGV+LNVYS +N+ KSFA                         
Sbjct: 193 GKKRYQDVLSTFTEMRELGVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGLFNSVF 252

Query: 260 ----------------------------------------------------------DD 319
                                                                     ++
Sbjct: 253 LKTSLVDMYFKCGKVGLARRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRTMISEE 312

Query: 320 GIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGL 379
            I PNSVILT+ILPV+GDV A +LG+EVHA V+K+KNY    ++ S LID+YCKCGD+  
Sbjct: 313 KIYPNSVILTTILPVLGDVKALKLGKEVHAHVLKSKNYVEQPFVHSGLIDLYCKCGDMAS 372

Query: 380 GRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQEGFRPDVVTVATILPVCAK 439
           GR VFYGSK+RNAI WTALMSGYA NGR +QA+RS++WMQQEGFRPDVVT+AT+LPVCA+
Sbjct: 373 GRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQEGFRPDVVTIATVLPVCAE 432

Query: 440 LRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYSLKLFNAMEQRNVILWTTM 499
           LRA++ GKEIH YALKN FLPNVS+V+SLMVMYSKCGV +Y ++LF+ +EQRNV  WT M
Sbjct: 433 LRAIKQGKEIHCYALKNLFLPNVSLVTSLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAM 492

Query: 500 IDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNF 559
           ID Y+EN  L   I++FR+M LSKHRPD+VTM R+L VCS+LK LK+GKE+HG +LK+ F
Sbjct: 493 IDCYVENCDLRAGIEVFRLMLLSKHRPDSVTMGRVLTVCSDLKALKLGKELHGHILKKEF 552

Query: 560 ESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQ 603
           ES+ FVS+ ++K+YGKCG ++ A   F+AV VKG++TWTAIIEAYG N   ++AI+ F+Q
Sbjct: 553 ESIPFVSARIIKMYGKCGDLRSANFSFDAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQ 612

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.9e-74
Identity = 152/523 (29.06%), Postives = 271/523 (51.82%), Query Frame = 0 

Query: 79  PLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNATTFSSLITACVRAKSLAN 138
           P+ +K     +  ++ FA+ + L +AL     +    +      F+ L+  C     L  
Sbjct: 94  PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV 153

Query: 139 AKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYPWNALLRGTVM 198
            K++H  +  +G   + F  T L +MY  C  + +A+K+FD    R +  WN ++ G   
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 199 AGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFADDGIRPNSVILTSILPVIGDVGAR 258
            G             M R+ +E+        +KS  ++ ++P+ + + S+LP +  +   
Sbjct: 214 NG-------------MARMALEM--------VKSMCEENLKPSFITIVSVLPAVSALRLI 273

Query: 259 RLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSG 318
            +G+E+H + +++  +  L+ I +AL+DMY KCG +   R +F G  ERN + W +++  
Sbjct: 274 SVGKEIHGYAMRS-GFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDA 333

Query: 319 YALNGRLEQAVRSVIWMQQEGFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPN 378
           Y  N   ++A+     M  EG +P  V+V   L  CA L  LE G+ IH  +++     N
Sbjct: 334 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 393

Query: 379 VSIVSSLMVMYSKCGVMDYSLKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQL 438
           VS+V+SL+ MY KC  +D +  +F  ++ R ++ W  MI  + +N    +A++ F  M+ 
Sbjct: 394 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 453

Query: 439 SKHRPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKM 498
              +PDT T   ++   +EL +    K IHG V++   +   FV++ LV +Y KCGA+ +
Sbjct: 454 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMI 513

Query: 499 AKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNE 558
           A+++F+ +  +   TW A+I+ YG +G  + A+ LF++M+     PN  TF  V+S C+ 
Sbjct: 514 ARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSH 573

Query: 559 GGFVDDALRIFKLMTVTYKIKASEEHYSFVIAILTRFGRIEEA 602
            G V+  L+ F +M   Y I+ S +HY  ++ +L R GR+ EA
Sbjct: 574 SGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEA 594

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy Swiss-Prot
Match: Q7Y211 (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 3.6e-72
Identity = 169/545 (31.01%), Postives = 272/545 (49.91%), Query Frame = 0 

Query: 87  AIYKDIQRFARQN---------------KLKEALTIMDYLDQRGIPVNATTFSSLITACV 146
           A+YK   R + +N               K + AL     +    +  ++ T  S++TAC 
Sbjct: 151 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 210

Query: 147 R---AKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYP 206
                + L   KQVHA+    G E N F+   LV MY   G L  ++ L      R +  
Sbjct: 211 NLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT 270

Query: 207 WNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFADDGIRPNSVILTSI 266
           WN     TV++       +L     +R + +E                G+ P+   ++S+
Sbjct: 271 WN-----TVLSSLCQNEQLLEALEYLREMVLE----------------GVEPDEFTISSV 330

Query: 267 LPVIGDVGARRLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGLGRAVFYGSKERN 326
           LP    +   R G+E+HA+ +K  +     ++ SAL+DMYC C  +  GR VF G  +R 
Sbjct: 331 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 390

Query: 327 AICWTALMSGYALNGRLEQAVRSVIWMQQE-GFRPDVVTVATILPVCAKLRALEPGKEIH 386
              W A+++GY+ N   ++A+   I M++  G   +  T+A ++P C +  A    + IH
Sbjct: 391 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 450

Query: 387 AYALKNYFLPNVSIVSSLMVMYSKCGVMDYSLKLFNAMEQRNVILWTTMIDSYIENQCLY 446
            + +K     +  + ++LM MYS+ G +D ++++F  ME R+++ W TMI  Y+ ++   
Sbjct: 451 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 510

Query: 447 EAIDIFRVMQ-----LSKH------RPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNF 506
           +A+ +   MQ     +SK       +P+++T+  IL  C+ L  L  GKEIH   +K N 
Sbjct: 511 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 570

Query: 507 ESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQ 566
            +   V S LV +Y KCG ++M++ VF+ +P K  +TW  II AYG +G  QEAI L   
Sbjct: 571 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 630

Query: 567 MRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKIKASEEHYSFVIAILTRFG 602
           M   G  PN  TF  V + C+  G VD+ LRIF +M   Y ++ S +HY+ V+ +L R G
Sbjct: 631 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 673

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.2e-72
Identity = 151/511 (29.55%), Postives = 272/511 (53.23%), Query Frame = 0 

Query: 92  IQRFARQNKLKEALTIMDYLDQRGIPVNATTFSSLITACVRAKSLANAKQVHAHIRINGL 151
           +   A+      ++ +   +   G+ +++ TFS +  +    +S+   +Q+H  I  +G 
Sbjct: 167 MNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF 226

Query: 152 ENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYPWNALLRGTVMAGRQDYRSILSTY 211
                +   LV  Y     ++ A+K+FDE + R V  WN+++ G V  G  +    LS +
Sbjct: 227 GERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE--KGLSVF 286

Query: 212 AEMRRLGVELNVYSFANIIKSFADDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKT 271
            +M   G+E+++ +  ++    AD  +                     LG+ VH+  +K 
Sbjct: 287 VQMLVSGIEIDLATIVSVFAGCADSRL-------------------ISLGRAVHSIGVKA 346

Query: 272 KNYSRLIYIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRS 331
             +SR     + L+DMY KCGD+   +AVF    +R+ + +T++++GYA  G   +AV+ 
Sbjct: 347 -CFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 406

Query: 332 VIWMQQEGFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSK 391
              M++EG  PDV TV  +L  CA+ R L+ GK +H +  +N    ++ + ++LM MY+K
Sbjct: 407 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAK 466

Query: 392 CGVMDYSLKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFR-VMQLSKHRPDTVTMSR 451
           CG M  +  +F+ M  +++I W T+I  Y +N    EA+ +F  +++  +  PD  T++ 
Sbjct: 467 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 526

Query: 452 ILYVCSELKLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKG 511
           +L  C+ L     G+EIHG +++  + S   V++ LV +Y KCGA+ +A M+F+ +  K 
Sbjct: 527 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 586

Query: 512 AMTWTAIIEAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFK 571
            ++WT +I  YG +G  +EAI LF+QMR +G   +  +F  +L  C+  G VD+  R F 
Sbjct: 587 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 646

Query: 572 LMTVTYKIKASEEHYSFVIAILTRFGRIEEA 602
           +M    KI+ + EHY+ ++ +L R G + +A
Sbjct: 647 IMRHECKIEPTVEHYACIVDMLARTGDLIKA 655

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy Swiss-Prot
Match: Q9LFL5 (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.6e-70
Identity = 159/527 (30.17%), Postives = 269/527 (51.04%), Query Frame = 0 

Query: 122 TFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDES 181
           TF  +  AC    S+   +  HA   + G  +N F+   LV MY+ C SL DA+K+FDE 
Sbjct: 129 TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188

Query: 182 SSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFADDGIRPN 241
           S   V  WN               SI+ +YA++ +  V L ++S     +   + G RP+
Sbjct: 189 SVWDVVSWN---------------SIIESYAKLGKPKVALEMFS-----RMTNEFGCRPD 248

Query: 242 SVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGLGRAVF 301
           ++ L ++LP    +G   LG+++H F + T    + +++ + L+DMY KCG +     VF
Sbjct: 249 NITLVNVLPPCASLGTHSLGKQLHCFAV-TSEMIQNMFVGNCLVDMYAKCGMMDEANTVF 308

Query: 302 YGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE----------------------- 361
                ++ + W A+++GY+  GR E AVR    MQ+E                       
Sbjct: 309 SNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGY 368

Query: 362 ------------GFRPDVVTVATILPVCAKLRALEPGKEIHAYAL-------KNYFLPNV 421
                       G +P+ VT+ ++L  CA + AL  GKEIH YA+       KN      
Sbjct: 369 EALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDEN 428

Query: 422 SIVSSLMVMYSKCGVMDYSLKLFNAM--EQRNVILWTTMIDSYIENQCLYEAIDIFRVM- 481
            +++ L+ MY+KC  +D +  +F+++  ++R+V+ WT MI  Y ++    +A+++   M 
Sbjct: 429 MVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 488

Query: 482 -QLSKHRPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNFESVH-FVSSELVKLYGKCG 541
            +  + RP+  T+S  L  C+ L  L++GK+IH   L+    +V  FVS+ L+ +Y KCG
Sbjct: 489 EEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCG 548

Query: 542 AVKMAKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLS 601
           ++  A++VF+ +  K  +TWT+++  YG +G  +EA+ +FD+MR  GF  +  T  VVL 
Sbjct: 549 SISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLY 608

[Close]
BLAST of Cp4.1LG02g10870 vs. NCBI nr
Match: XP_023523645.1 (pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1159 bits (2997), Expect = 0.0
Identity = 602/684 (88.01%), Postives = 602/684 (88.01%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF
Sbjct: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA
Sbjct: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASALT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLKAHALLIKNGLVGSSILGTTLIDMYFKCGKIKLARQMFDEITERDIVVWGSMIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI
Sbjct: 301 HNRLQREALEYTRRMIDDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS
Sbjct: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL
Sbjct: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII
Sbjct: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI
Sbjct: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. NCBI nr
Match: KAG7037161.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1157 bits (2993), Expect = 0.0
Identity = 601/684 (87.87%), Postives = 602/684 (88.01%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF
Sbjct: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQ+GIPVNA
Sbjct: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQQGIPVNA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASALT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLKAHALLIKNGLVGSSILGTTLIDMYFKCGKIKLARQMFDEITERDIVVWGSMIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI
Sbjct: 301 HNRLQREALEYTRRMIDDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS
Sbjct: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL
Sbjct: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII
Sbjct: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI
Sbjct: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. NCBI nr
Match: XP_022948408.1 (pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita moschata])

HSP 1 Score: 1152 bits (2980), Expect = 0.0
Identity = 598/684 (87.43%), Postives = 601/684 (87.87%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSFTLSLHLHPFPPNPLAVA AAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF
Sbjct: 1   MEISSSFTLSLHLHPFPPNPLAVAVAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA
Sbjct: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASALT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLKAHALLIKNGLVGSSILGTTLIDMYFKCGKIKLARQMFDEITERDIVVWGSMIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI
Sbjct: 301 HNRLQREALEYTRRMIDDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCAKLRAL+PGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS
Sbjct: 421 GFRPDVVTVATILPVCAKLRALKPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL
Sbjct: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           KLLKMGKEIHGQVLKRNFESVHFVSSE+VKLYGKCGA+KMAKMVFEAVPVKGAMTWTAII
Sbjct: 541 KLLKMGKEIHGQVLKRNFESVHFVSSEVVKLYGKCGALKMAKMVFEAVPVKGAMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI
Sbjct: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. NCBI nr
Match: XP_022973460.1 (pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita maxima])

HSP 1 Score: 1142 bits (2953), Expect = 0.0
Identity = 592/684 (86.55%), Postives = 598/684 (87.43%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSFTLSLHL PFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF
Sbjct: 1   MEISSSFTLSLHLQPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIP NA
Sbjct: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPANA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASALT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLRAHALLIKNGLVGSSILGTTLIDMYFKCGKIKLARQMFDEITERDIVVWGSMIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYS+LI
Sbjct: 301 HNRLQREALEYTRRMIDDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSKLI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           YIQSALIDMYCKCGDIGLGRAVFYGS ERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 YIQSALIDMYCKCGDIGLGRAVFYGSMERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCAKLRAL+PGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGV+DYS
Sbjct: 421 GFRPDVVTVATILPVCAKLRALKPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVLDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTV MSRIL+VCSEL
Sbjct: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVAMSRILFVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           KLLKMGKEIHGQVLKRNFESVHFVSS+LVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII
Sbjct: 541 KLLKMGKEIHGQVLKRNFESVHFVSSKLVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYGNNGEL+EAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI
Sbjct: 601 EAYGNNGELEEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. NCBI nr
Match: XP_038889186.1 (pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Benincasa hispida])

HSP 1 Score: 1015 bits (2625), Expect = 0.0
Identity = 523/684 (76.46%), Postives = 563/684 (82.31%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSF  SLHLHPFPPNPLAVA     SNSG +LSRIK+ TQ+ TDTPP + K+V+KF
Sbjct: 1   MEISSSFIPSLHLHPFPPNPLAVAI----SNSGRQLSRIKSLTQSPTDTPPSKIKLVSKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           + + RP FAE+DAFP SLPLHTKNPHAIY+DIQRFAR+NKLKEALTIMDYLDQ+GIPVNA
Sbjct: 61  RYKNRPAFAEKDAFPSSLPLHTKNPHAIYEDIQRFARKNKLKEALTIMDYLDQQGIPVNA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVR KS+ +AKQ+HAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRTKSMTDAKQIHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSS+S+YPWNALLRGTVMAGR+DYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSKSIYPWNALLRGTVMAGRRDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLKVHGLLIKNGLVGSSILGTSLVDMYFKCGKIKLARQVFEEITERDVVVWGSIIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILT+ILPVIG++ ARRLGQEVHA+VIKTK YS+ I
Sbjct: 301 HNRLQREALEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEVHAYVIKTKGYSKQI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           +IQSALIDMYCKCGDIG GRAVFY S ERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 FIQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCA+LRAL PGKEIHAYALKN FLPNVSIVSSLMVMYSKCGVMDYS
Sbjct: 421 GFRPDVVTVATILPVCAELRALRPGKEIHAYALKNCFLPNVSIVSSLMVMYSKCGVMDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFNAMEQRNVILWT MIDSYIEN+C +EAI IFR MQLSKHRPDTVTM+RILYVCSEL
Sbjct: 481 LKLFNAMEQRNVILWTAMIDSYIENECPHEAIGIFRAMQLSKHRPDTVTMARILYVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           K+LKMGKEIHGQVLKR FESVHFVS+ELVKLYGKCGAVKMAKMVFEA+PVKG+MTWTAII
Sbjct: 541 KMLKMGKEIHGQVLKRKFESVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGSMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYG+NGE +EAI LFDQMRSSG +PNHFTFKVVLS+C E GFVDDA+RIFKLM+V YKI
Sbjct: 601 EAYGDNGEFKEAIDLFDQMRSSGISPNHFTFKVVLSICKEAGFVDDAMRIFKLMSVRYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy TrEMBL
Match: A0A6J1G986 (pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452099 PE=4 SV=1)

HSP 1 Score: 1152 bits (2980), Expect = 0.0
Identity = 598/684 (87.43%), Postives = 601/684 (87.87%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSFTLSLHLHPFPPNPLAVA AAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF
Sbjct: 1   MEISSSFTLSLHLHPFPPNPLAVAVAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA
Sbjct: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASALT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLKAHALLIKNGLVGSSILGTTLIDMYFKCGKIKLARQMFDEITERDIVVWGSMIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI
Sbjct: 301 HNRLQREALEYTRRMIDDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCAKLRAL+PGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS
Sbjct: 421 GFRPDVVTVATILPVCAKLRALKPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL
Sbjct: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           KLLKMGKEIHGQVLKRNFESVHFVSSE+VKLYGKCGA+KMAKMVFEAVPVKGAMTWTAII
Sbjct: 541 KLLKMGKEIHGQVLKRNFESVHFVSSEVVKLYGKCGALKMAKMVFEAVPVKGAMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI
Sbjct: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy TrEMBL
Match: A0A6J1IBE8 (pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471998 PE=4 SV=1)

HSP 1 Score: 1142 bits (2953), Expect = 0.0
Identity = 592/684 (86.55%), Postives = 598/684 (87.43%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSFTLSLHL PFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF
Sbjct: 1   MEISSSFTLSLHLQPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIP NA
Sbjct: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPANA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASALT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLRAHALLIKNGLVGSSILGTTLIDMYFKCGKIKLARQMFDEITERDIVVWGSMIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYS+LI
Sbjct: 301 HNRLQREALEYTRRMIDDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSKLI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           YIQSALIDMYCKCGDIGLGRAVFYGS ERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 YIQSALIDMYCKCGDIGLGRAVFYGSMERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCAKLRAL+PGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGV+DYS
Sbjct: 421 GFRPDVVTVATILPVCAKLRALKPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVLDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTV MSRIL+VCSEL
Sbjct: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVAMSRILFVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           KLLKMGKEIHGQVLKRNFESVHFVSS+LVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII
Sbjct: 541 KLLKMGKEIHGQVLKRNFESVHFVSSKLVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYGNNGEL+EAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI
Sbjct: 601 EAYGNNGELEEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy TrEMBL
Match: A0A5A7TCH1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00800 PE=4 SV=1)

HSP 1 Score: 999 bits (2583), Expect = 0.0
Identity = 515/684 (75.29%), Postives = 556/684 (81.29%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSF +SLHL PFPPN L  A A  N   GH+LSRIK++T    D PP + K+V+KF
Sbjct: 1   MEISSSFLISLHLQPFPPNSLTAASAICNP--GHQLSRIKSTT----DIPPPKIKIVSKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           +NRKRP FAE+DAFP SLPLHTKNPHAIY+DIQRFARQNKLKEALTI+DY+DQ+GIPVNA
Sbjct: 61  RNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDIQRFARQNKLKEALTILDYVDQQGIPVNA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVR KS+ +AKQ+HAHIRINGLENNEF+RTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRTKSMTDAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSS+SVYPWNALLRGTVMAGR+DYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSKSVYPWNALLRGTVMAGRRDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLKAHSLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQMFEEITERDVVVWGSIIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILT+ILPVIG++ ARRLGQEVHA+VIKTK+YS+ I
Sbjct: 301 HNRLQREALVYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEVHAYVIKTKSYSKQI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           +IQS+LIDMYCKCGDIG GRAVFY S ERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 FIQSSLIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCA+LRAL PGKEIHAYA+KN FLPNVSIVSSLMVMYSKCGVMDYS
Sbjct: 421 GFRPDVVTVATILPVCAQLRALRPGKEIHAYAVKNCFLPNVSIVSSLMVMYSKCGVMDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFN MEQRNVILWT MIDSY+ENQC +EAIDIFR MQLSKHRPDTVTM+RILYVCSEL
Sbjct: 481 LKLFNGMEQRNVILWTAMIDSYVENQCPHEAIDIFRAMQLSKHRPDTVTMARILYVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           K+LKMGKEIHGQVLKR FE VHFVSSELVKLYGKCGAVKMAKMVFEA+PVKG MTWTAII
Sbjct: 541 KMLKMGKEIHGQVLKRKFEQVHFVSSELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYG NGE QEAI LFD+MRS G +PNHFTFKVVLS+C E GFVD+ALRIFKLM+V YKI
Sbjct: 601 EAYGKNGEFQEAIDLFDRMRSCGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy TrEMBL
Match: A0A0A0KXW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649310 PE=4 SV=1)

HSP 1 Score: 997 bits (2577), Expect = 0.0
Identity = 514/684 (75.15%), Postives = 556/684 (81.29%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSF +SLHL PF PN LA A A  NS  GHRLSRIK++T    DTPP + K+V+KF
Sbjct: 1   MEISSSFIISLHLQPFTPNSLAPATAICNS--GHRLSRIKSTT----DTPPSKIKIVSKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           +NRKRP FAE+DAFP SLPLHTKNPHAIY+D+QRFARQNKLKEALTIMDY+DQ+GIPVNA
Sbjct: 61  RNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFARQNKLKEALTIMDYVDQQGIPVNA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVR KS+  AKQ+HAHIRINGLENNEF+RTRLVHMYTACGSLE+AQKLFDE
Sbjct: 121 TTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEEAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSS+SVYPWNALLRGTVMAGR+DYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSKSVYPWNALLRGTVMAGRRDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLKAHGLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQMFGEITERDVVVWGSIIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILT+ILPVIG++ ARRLGQEVHA+VIKTK+YS+ I
Sbjct: 301 HNRLQREALEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEVHAYVIKTKSYSKQI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           +IQSALIDMYCKCGDIG GRAVFY S ERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 FIQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPD+VTVATILPVCA+LRAL PGKEIHAYA+KN FLPNVSIVSSLMVMYSKCGVMDY+
Sbjct: 421 GFRPDIVTVATILPVCAQLRALRPGKEIHAYAMKNCFLPNVSIVSSLMVMYSKCGVMDYT 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFN MEQRNVILWT MIDSYIENQC +EAIDIFR MQLSKHRPDTVTMSRILY+CSE 
Sbjct: 481 LKLFNGMEQRNVILWTAMIDSYIENQCPHEAIDIFRAMQLSKHRPDTVTMSRILYICSEQ 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           K+LKMGKEIHGQVLKR FE VHFVS+ELVKLYGKCGAVKMAKMVFEA+PVKG MTWTAII
Sbjct: 541 KMLKMGKEIHGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYG +GE QEAI LFD+MRS G +PNHFTFKVVLS+C E GFVD+ALRIFKLM+V YKI
Sbjct: 601 EAYGESGEFQEAIDLFDRMRSRGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. ExPASy TrEMBL
Match: A0A1S3CBS1 (pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498672 PE=4 SV=1)

HSP 1 Score: 997 bits (2577), Expect = 0.0
Identity = 513/684 (75.00%), Postives = 556/684 (81.29%), Query Frame = 0 

Query: 1   MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKF 60
           MEISSSF +SLHL PFPPN L  A A  N   GH+LSRIK++T    D PP + K+V+KF
Sbjct: 1   MEISSSFLISLHLQPFPPNSLTAASAICNP--GHQLSRIKSTT----DIPPPKIKIVSKF 60

Query: 61  QNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNA 120
           +NRKRP FAE+DAFP SLPLHTKNPHAIY+DIQRFARQNKLKEALTI+DY+DQ+GIPVNA
Sbjct: 61  RNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDIQRFARQNKLKEALTILDYVDQQGIPVNA 120

Query: 121 TTFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDE 180
           TTFSSLITACVR KS+ +AKQ+HAHIRINGLENNEF+RTRLVHMYTACGSLEDAQKLFDE
Sbjct: 121 TTFSSLITACVRTKSMTDAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEDAQKLFDE 180

Query: 181 SSSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------ 240
           SSS+SVYPWNALLRGTVMAGR+DYRSILSTYAEMRRLGVELNVYSFANIIKSFA      
Sbjct: 181 SSSKSVYPWNALLRGTVMAGRRDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFT 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QGLKAHSLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQMFEEITERDVVVWGSIIAGFA 300

Query: 301 ----------------DDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLI 360
                           DDGIRPNSVILT+ILPVIG++ ARRLGQEVHA+VIKTK+YS+ I
Sbjct: 301 HNRLQREALVYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEVHAYVIKTKSYSKQI 360

Query: 361 YIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420
           +IQS+LIDMYCKCGDIG GRAVFY S ERNAICWTALMSGYALNGRLEQAVRSVIWMQQE
Sbjct: 361 FIQSSLIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYALNGRLEQAVRSVIWMQQE 420

Query: 421 GFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYS 480
           GFRPDVVTVATILPVCA+LRAL PGKEIHAYA+KN FLPNVSIVSSLMVMYSKCGV+DYS
Sbjct: 421 GFRPDVVTVATILPVCAQLRALRPGKEIHAYAVKNCFLPNVSIVSSLMVMYSKCGVIDYS 480

Query: 481 LKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSEL 540
           LKLFN MEQRNVILWT MIDSY+ENQC +EAIDIFR MQLSKHRPDTVTM+RILYVCSEL
Sbjct: 481 LKLFNGMEQRNVILWTAMIDSYVENQCPHEAIDIFRAMQLSKHRPDTVTMARILYVCSEL 540

Query: 541 KLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAII 600
           K+LKMGKEIHGQVLKR FE VHFVSSELVKLYGKCGAVKMAKMVFEA+PVKG MTWTAII
Sbjct: 541 KVLKMGKEIHGQVLKRKFEQVHFVSSELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAII 600

Query: 601 EAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKI 602
           EAYG NGE QEAI LFD+MRS G +PNHFTFKVVLS+C E GFVD+ALRIFKLM+V YKI
Sbjct: 601 EAYGENGEFQEAIDLFDRMRSCGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKI 660

[Close]
BLAST of Cp4.1LG02g10870 vs. TAIR 10
Match: AT1G71460.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 721.1 bits (1860), Expect = 8.0e-208
Identity = 364/666 (54.65%), Postives = 464/666 (69.67%), Query Frame = 0 

Query: 20  PLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLP 79
           P +++   + ++  HR    K      +   P R +  +    +K   F ERDAFP SLP
Sbjct: 13  PASLSVTTSLNHRPHRSD--KDGAPAKSPIRPSRTRRPSTSPAKKPKPFRERDAFPSSLP 72

Query: 80  LHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNATTFSSLITACVRAKSLANA 139
           LH+KNP+ I++DIQ FARQN L+ ALTI+DYL+QRGIPVNATTFS+L+ ACVR KSL + 
Sbjct: 73  LHSKNPYIIHRDIQIFARQNNLEVALTILDYLEQRGIPVNATTFSALLEACVRRKSLLHG 132

Query: 140 KQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYPWNALLRGTVMA 199
           KQVH HIRINGLE+NEFLRT+LVHMYTACGS++DAQK+FDES+S +VY WNALLRGTV++
Sbjct: 133 KQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFDESTSSNVYSWNALLRGTVIS 192

Query: 200 GRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFA------------------------- 259
           G++ Y+ +LST+ EMR LGV+LNVYS +N+ KSFA                         
Sbjct: 193 GKKRYQDVLSTFTEMRELGVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGLFNSVF 252

Query: 260 ----------------------------------------------------------DD 319
                                                                     ++
Sbjct: 253 LKTSLVDMYFKCGKVGLARRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRTMISEE 312

Query: 320 GIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGL 379
            I PNSVILT+ILPV+GDV A +LG+EVHA V+K+KNY    ++ S LID+YCKCGD+  
Sbjct: 313 KIYPNSVILTTILPVLGDVKALKLGKEVHAHVLKSKNYVEQPFVHSGLIDLYCKCGDMAS 372

Query: 380 GRAVFYGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQEGFRPDVVTVATILPVCAK 439
           GR VFYGSK+RNAI WTALMSGYA NGR +QA+RS++WMQQEGFRPDVVT+AT+LPVCA+
Sbjct: 373 GRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQEGFRPDVVTIATVLPVCAE 432

Query: 440 LRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSKCGVMDYSLKLFNAMEQRNVILWTTM 499
           LRA++ GKEIH YALKN FLPNVS+V+SLMVMYSKCGV +Y ++LF+ +EQRNV  WT M
Sbjct: 433 LRAIKQGKEIHCYALKNLFLPNVSLVTSLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAM 492

Query: 500 IDSYIENQCLYEAIDIFRVMQLSKHRPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNF 559
           ID Y+EN  L   I++FR+M LSKHRPD+VTM R+L VCS+LK LK+GKE+HG +LK+ F
Sbjct: 493 IDCYVENCDLRAGIEVFRLMLLSKHRPDSVTMGRVLTVCSDLKALKLGKELHGHILKKEF 552

Query: 560 ESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQ 603
           ES+ FVS+ ++K+YGKCG ++ A   F+AV VKG++TWTAIIEAYG N   ++AI+ F+Q
Sbjct: 553 ESIPFVSARIIKMYGKCGDLRSANFSFDAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQ 612

[Close]
BLAST of Cp4.1LG02g10870 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 280.8 bits (717), Expect = 2.8e-75
Identity = 152/523 (29.06%), Postives = 271/523 (51.82%), Query Frame = 0 

Query: 79  PLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQRGIPVNATTFSSLITACVRAKSLAN 138
           P+ +K     +  ++ FA+ + L +AL     +    +      F+ L+  C     L  
Sbjct: 94  PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV 153

Query: 139 AKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYPWNALLRGTVM 198
            K++H  +  +G   + F  T L +MY  C  + +A+K+FD    R +  WN ++ G   
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 199 AGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFADDGIRPNSVILTSILPVIGDVGAR 258
            G             M R+ +E+        +KS  ++ ++P+ + + S+LP +  +   
Sbjct: 214 NG-------------MARMALEM--------VKSMCEENLKPSFITIVSVLPAVSALRLI 273

Query: 259 RLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSG 318
            +G+E+H + +++  +  L+ I +AL+DMY KCG +   R +F G  ERN + W +++  
Sbjct: 274 SVGKEIHGYAMRS-GFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDA 333

Query: 319 YALNGRLEQAVRSVIWMQQEGFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPN 378
           Y  N   ++A+     M  EG +P  V+V   L  CA L  LE G+ IH  +++     N
Sbjct: 334 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 393

Query: 379 VSIVSSLMVMYSKCGVMDYSLKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFRVMQL 438
           VS+V+SL+ MY KC  +D +  +F  ++ R ++ W  MI  + +N    +A++ F  M+ 
Sbjct: 394 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 453

Query: 439 SKHRPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKM 498
              +PDT T   ++   +EL +    K IHG V++   +   FV++ LV +Y KCGA+ +
Sbjct: 454 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMI 513

Query: 499 AKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNE 558
           A+++F+ +  +   TW A+I+ YG +G  + A+ LF++M+     PN  TF  V+S C+ 
Sbjct: 514 ARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSH 573

Query: 559 GGFVDDALRIFKLMTVTYKIKASEEHYSFVIAILTRFGRIEEA 602
            G V+  L+ F +M   Y I+ S +HY  ++ +L R GR+ EA
Sbjct: 574 SGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEA 594

[Close]
BLAST of Cp4.1LG02g10870 vs. TAIR 10
Match: AT3G57430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 274.2 bits (700), Expect = 2.6e-73
Identity = 169/545 (31.01%), Postives = 272/545 (49.91%), Query Frame = 0 

Query: 87  AIYKDIQRFARQN---------------KLKEALTIMDYLDQRGIPVNATTFSSLITACV 146
           A+YK   R + +N               K + AL     +    +  ++ T  S++TAC 
Sbjct: 151 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 210

Query: 147 R---AKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYP 206
                + L   KQVHA+    G E N F+   LV MY   G L  ++ L      R +  
Sbjct: 211 NLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT 270

Query: 207 WNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFADDGIRPNSVILTSI 266
           WN     TV++       +L     +R + +E                G+ P+   ++S+
Sbjct: 271 WN-----TVLSSLCQNEQLLEALEYLREMVLE----------------GVEPDEFTISSV 330

Query: 267 LPVIGDVGARRLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGLGRAVFYGSKERN 326
           LP    +   R G+E+HA+ +K  +     ++ SAL+DMYC C  +  GR VF G  +R 
Sbjct: 331 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 390

Query: 327 AICWTALMSGYALNGRLEQAVRSVIWMQQE-GFRPDVVTVATILPVCAKLRALEPGKEIH 386
              W A+++GY+ N   ++A+   I M++  G   +  T+A ++P C +  A    + IH
Sbjct: 391 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 450

Query: 387 AYALKNYFLPNVSIVSSLMVMYSKCGVMDYSLKLFNAMEQRNVILWTTMIDSYIENQCLY 446
            + +K     +  + ++LM MYS+ G +D ++++F  ME R+++ W TMI  Y+ ++   
Sbjct: 451 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 510

Query: 447 EAIDIFRVMQ-----LSKH------RPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNF 506
           +A+ +   MQ     +SK       +P+++T+  IL  C+ L  L  GKEIH   +K N 
Sbjct: 511 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 570

Query: 507 ESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQ 566
            +   V S LV +Y KCG ++M++ VF+ +P K  +TW  II AYG +G  QEAI L   
Sbjct: 571 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 630

Query: 567 MRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFKLMTVTYKIKASEEHYSFVIAILTRFG 602
           M   G  PN  TF  V + C+  G VD+ LRIF +M   Y ++ S +HY+ V+ +L R G
Sbjct: 631 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 673

[Close]
BLAST of Cp4.1LG02g10870 vs. TAIR 10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 273.5 bits (698), Expect = 4.4e-73
Identity = 151/511 (29.55%), Postives = 272/511 (53.23%), Query Frame = 0 

Query: 92  IQRFARQNKLKEALTIMDYLDQRGIPVNATTFSSLITACVRAKSLANAKQVHAHIRINGL 151
           +   A+      ++ +   +   G+ +++ TFS +  +    +S+   +Q+H  I  +G 
Sbjct: 167 MNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF 226

Query: 152 ENNEFLRTRLVHMYTACGSLEDAQKLFDESSSRSVYPWNALLRGTVMAGRQDYRSILSTY 211
                +   LV  Y     ++ A+K+FDE + R V  WN+++ G V  G  +    LS +
Sbjct: 227 GERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE--KGLSVF 286

Query: 212 AEMRRLGVELNVYSFANIIKSFADDGIRPNSVILTSILPVIGDVGARRLGQEVHAFVIKT 271
            +M   G+E+++ +  ++    AD  +                     LG+ VH+  +K 
Sbjct: 287 VQMLVSGIEIDLATIVSVFAGCADSRL-------------------ISLGRAVHSIGVKA 346

Query: 272 KNYSRLIYIQSALIDMYCKCGDIGLGRAVFYGSKERNAICWTALMSGYALNGRLEQAVRS 331
             +SR     + L+DMY KCGD+   +AVF    +R+ + +T++++GYA  G   +AV+ 
Sbjct: 347 -CFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 406

Query: 332 VIWMQQEGFRPDVVTVATILPVCAKLRALEPGKEIHAYALKNYFLPNVSIVSSLMVMYSK 391
              M++EG  PDV TV  +L  CA+ R L+ GK +H +  +N    ++ + ++LM MY+K
Sbjct: 407 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAK 466

Query: 392 CGVMDYSLKLFNAMEQRNVILWTTMIDSYIENQCLYEAIDIFR-VMQLSKHRPDTVTMSR 451
           CG M  +  +F+ M  +++I W T+I  Y +N    EA+ +F  +++  +  PD  T++ 
Sbjct: 467 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 526

Query: 452 ILYVCSELKLLKMGKEIHGQVLKRNFESVHFVSSELVKLYGKCGAVKMAKMVFEAVPVKG 511
           +L  C+ L     G+EIHG +++  + S   V++ LV +Y KCGA+ +A M+F+ +  K 
Sbjct: 527 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 586

Query: 512 AMTWTAIIEAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLSVCNEGGFVDDALRIFK 571
            ++WT +I  YG +G  +EAI LF+QMR +G   +  +F  +L  C+  G VD+  R F 
Sbjct: 587 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 646

Query: 572 LMTVTYKIKASEEHYSFVIAILTRFGRIEEA 602
           +M    KI+ + EHY+ ++ +L R G + +A
Sbjct: 647 IMRHECKIEPTVEHYACIVDMLARTGDLIKA 655

[Close]
BLAST of Cp4.1LG02g10870 vs. TAIR 10
Match: AT5G16860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 268.1 bits (684), Expect = 1.8e-71
Identity = 159/527 (30.17%), Postives = 269/527 (51.04%), Query Frame = 0 

Query: 122 TFSSLITACVRAKSLANAKQVHAHIRINGLENNEFLRTRLVHMYTACGSLEDAQKLFDES 181
           TF  +  AC    S+   +  HA   + G  +N F+   LV MY+ C SL DA+K+FDE 
Sbjct: 129 TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188

Query: 182 SSRSVYPWNALLRGTVMAGRQDYRSILSTYAEMRRLGVELNVYSFANIIKSFADDGIRPN 241
           S   V  WN               SI+ +YA++ +  V L ++S     +   + G RP+
Sbjct: 189 SVWDVVSWN---------------SIIESYAKLGKPKVALEMFS-----RMTNEFGCRPD 248

Query: 242 SVILTSILPVIGDVGARRLGQEVHAFVIKTKNYSRLIYIQSALIDMYCKCGDIGLGRAVF 301
           ++ L ++LP    +G   LG+++H F + T    + +++ + L+DMY KCG +     VF
Sbjct: 249 NITLVNVLPPCASLGTHSLGKQLHCFAV-TSEMIQNMFVGNCLVDMYAKCGMMDEANTVF 308

Query: 302 YGSKERNAICWTALMSGYALNGRLEQAVRSVIWMQQE----------------------- 361
                ++ + W A+++GY+  GR E AVR    MQ+E                       
Sbjct: 309 SNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGY 368

Query: 362 ------------GFRPDVVTVATILPVCAKLRALEPGKEIHAYAL-------KNYFLPNV 421
                       G +P+ VT+ ++L  CA + AL  GKEIH YA+       KN      
Sbjct: 369 EALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDEN 428

Query: 422 SIVSSLMVMYSKCGVMDYSLKLFNAM--EQRNVILWTTMIDSYIENQCLYEAIDIFRVM- 481
            +++ L+ MY+KC  +D +  +F+++  ++R+V+ WT MI  Y ++    +A+++   M 
Sbjct: 429 MVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 488

Query: 482 -QLSKHRPDTVTMSRILYVCSELKLLKMGKEIHGQVLKRNFESVH-FVSSELVKLYGKCG 541
            +  + RP+  T+S  L  C+ L  L++GK+IH   L+    +V  FVS+ L+ +Y KCG
Sbjct: 489 EEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCG 548

Query: 542 AVKMAKMVFEAVPVKGAMTWTAIIEAYGNNGELQEAIHLFDQMRSSGFTPNHFTFKVVLS 601
           ++  A++VF+ +  K  +TWT+++  YG +G  +EA+ +FD+MR  GF  +  T  VVL 
Sbjct: 549 SISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLY 608

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g10870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C9I31.1e-20654.65Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidop... [more]
Q3E6Q13.9e-7429.06Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
Q7Y2113.6e-7231.01Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop... [more]
Q9SN396.2e-7229.55Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t... [more]
Q9LFL52.6e-7030.17Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX... [more]
BLAST of Cp4.1LG02g10870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023523645.10.088.01pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita ... [more]
KAG7037161.10.087.87Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
XP_022948408.10.087.43pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita ... [more]
XP_022973460.10.086.55pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita ... [more]
XP_038889186.10.076.46pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Benincasa ... [more]
BLAST of Cp4.1LG02g10870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G9860.087.43pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Cucurbit... [more]
A0A6J1IBE80.086.55pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Cucurbit... [more]
A0A5A7TCH10.075.29Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0KXW00.075.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649310 PE=4 SV=1[more]
A0A1S3CBS10.075.00pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Cucumis ... [more]
BLAST of Cp4.1LG02g10870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G71460.18.0e-20854.65Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G11290.12.8e-7529.06Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G57430.12.6e-7331.01Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G18750.14.4e-7329.55Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G16860.11.8e-7130.17Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 239..363
e-value: 8.1E-18
score: 66.4
coord: 364..463
e-value: 3.6E-17
score: 64.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 464..606
e-value: 5.2E-23
score: 83.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 86..237
e-value: 4.1E-24
score: 87.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 511..556
e-value: 1.9E-11
score: 44.0
coord: 308..355
e-value: 1.0E-7
score: 32.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 412..437
e-value: 0.0045
score: 17.2
coord: 383..410
e-value: 0.13
score: 12.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 513..545
e-value: 1.9E-9
score: 35.1
coord: 412..445
e-value: 4.2E-5
score: 21.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 107..152
e-value: 0.0012
score: 18.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 510..544
score: 12.660359
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 409..443
score: 9.361008
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 308..342
score: 10.742131
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 236..602
NoneNo IPR availablePANTHERPTHR47929:SF3PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTICcoord: 236..602
coord: 65..234
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 65..234

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g10870.1Cp4.1LG02g10870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding