Cp4.1LG02g10830 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g10830
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	alpha/beta-Hydrolases superfamily protein
Location	Cp4.1LG02: 9201113 .. 9201791 (+)
RNA-Seq Expression	Cp4.1LG02g10830
Synteny	Cp4.1LG02g10830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGTGTAGCACTTTTGAAGCTTCCACCTCCAAAGCTATGTGGATCACCAAATGGTCCTCCACTCACTTCCCCTAGAGATGGAAGGCATTTGGCCTACAAAGAATTTGGAGTTCGTGAGGAGGAGGCTCGTTACAACATCATTTTTTGTCATGGCCTTTATAGCTGCAAACATCTTGATTTCCCAATCTCTCAAGTACCATTATCCGTCTTTATCTTTATTTTCGAACACATTAGAATATTCTAACAAATTTTAGGTTAAAATTAAGTTTTTTTATTATGCTCGACTTGTCCCTTTTATTTATTTATTTATATATATATATATATATATTTAATTTTTAATTTTAGGAACTAATGGAAGAGCTCAAGTTTTACTTAATAATAGAGTGGGTTATTGCGAGAGTGACCCATATTCATCACGCTCAATAAGGACTAAGGTATTTAACATTCAAGAATTAGCTGACTAGTTGGAGCTTGGCCCAAAATTTTACATAATTGGATGTTTAGTGATAAAGTATGCTATTTGGGGTTGTTTGAAATATATTCCACACAGTATTTTGACATTTATTTCACTATCATCAACTATTTTTTAATTTTTTTTTAAAATCTTATTTGAAACTTCTACTTTTTCAAATTTGTAGTACTCTAATAGGTCCCTAATATGTTAAAGCAATGA

mRNA sequence

ATGGCACTTTTGAAGCTTCCACCTCCAAAGCTATGTGGATCACCAAATGGTCCTCCACTCACTTCCCCTAGAGATGGAAGGCATTTGGCCTACAAAGAATTTGGAGTTCGTGAGGAGGAGGCTCGAACTAATGGAAGAGCTCAAGTTTTACTTAATAATAGAGTGGGTTATTGCGAGAGTGACCCATATTCATCACGCTCAATAAGGACTAAGGTCCCTAATATGTTAAAGCAATGA

Coding sequence (CDS)

ATGGCACTTTTGAAGCTTCCACCTCCAAAGCTATGTGGATCACCAAATGGTCCTCCACTCACTTCCCCTAGAGATGGAAGGCATTTGGCCTACAAAGAATTTGGAGTTCGTGAGGAGGAGGCTCGAACTAATGGAAGAGCTCAAGTTTTACTTAATAATAGAGTGGGTTATTGCGAGAGTGACCCATATTCATCACGCTCAATAAGGACTAAGGTCCCTAATATGTTAAAGCAATGA

Protein sequence

MALLKLPPPKLCGSPNGPPLTSPRDGRHLAYKEFGVREEEARTNGRAQVLLNNRVGYCESDPYSSRSIRTKVPNMLKQ

Homology

[Close]

BLAST of Cp4.1LG02g10830 vs. NCBI nr
Match: XP_022949234.1 (uncharacterized protein LOC111452648 [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 5.02e-21
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 1   MALLKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEARTNG----------- 60
           +ALLK PPPKLCGSPNGPPLTSPR    DGRHLAYKE GVR+EEAR N            
Sbjct: 19  VALLKPPPPKLCGSPNGPPLTSPRIKLSDGRHLAYKELGVRKEEARYNIIISHGLYSCKD 78

Query: 61  -------------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                        +  +++ +R G+CESDPY SRS++T+ 
Sbjct: 79  MDLPISQERMEELKLYIVIYDRAGHCESDPYPSRSVKTEA 118

[Close]

BLAST of Cp4.1LG02g10830 vs. NCBI nr
Match: KAG6607512.1 (RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 1.90e-20
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 1   MALLKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEARTNG----------- 60
           +ALLK PPPKLCGSPNGPPLTSPR    DGRHLAYKE GVR+EEAR N            
Sbjct: 19  VALLKPPPPKLCGSPNGPPLTSPRIKLSDGRHLAYKELGVRKEEARYNIIISHGLYSCKD 78

Query: 61  -------------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                        +  +++ +R G+CESDPY SRS++T+ 
Sbjct: 79  MDLPISQERMEELKLYIVIYDRAGHCESDPYPSRSVKTEA 118

[Close]

BLAST of Cp4.1LG02g10830 vs. NCBI nr
Match: XP_022973430.1 (uncharacterized protein LOC111471974 [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 7.17e-20
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 1   MALLKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR-----TNG------ 60
           +ALLK PPPKLCGSPNGPPLTSPR    DGRHLAYKE GVR+EEAR     ++G      
Sbjct: 19  VALLKPPPPKLCGSPNGPPLTSPRVKLSDGRHLAYKELGVRKEEARYKIVISHGIYSCKD 78

Query: 61  -------------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                        +  +++ +R G+CES+PY SRS++T+ 
Sbjct: 79  MDLPISQELMEEIKLYIVIYDRAGHCESNPYPSRSVKTEA 118

[Close]

BLAST of Cp4.1LG02g10830 vs. NCBI nr
Match: XP_023523439.1 (uncharacterized protein LOC111787652 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 2.70e-19
Identity = 50/100 (50.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 1   MALLKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR-----TNG------ 60
           +ALLK P PKLCGSPNGPPL+SPR    DGRHLAYKE GVR+EEAR     ++G      
Sbjct: 19  VALLKPPSPKLCGSPNGPPLSSPRVKLSDGRHLAYKELGVRKEEARYKIIISHGLYSCKD 78

Query: 61  -------------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                        +  +++ +R G+CESDPY SRS+RT+ 
Sbjct: 79  MDLPISQERMEELKLYIVIYDRAGHCESDPYPSRSVRTEA 118

[Close]

BLAST of Cp4.1LG02g10830 vs. NCBI nr
Match: XP_022932192.1 (uncharacterized protein LOC111438511 [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 9.99e-16
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 4   LKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR-----TNG--------- 63
           LK PPPK+CGSPNGPPLTS R    DGRHLAY+EFGV +E+A+     ++G         
Sbjct: 21  LKPPPPKICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQYKIILSHGYNDSRQMHL 80

Query: 64  ----------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                      A ++L +R GY ESDPYSSRS +T+ 
Sbjct: 81  AASEELMEEINACIILYDRAGYGESDPYSSRSAKTEA 117

[Close]

BLAST of Cp4.1LG02g10830 vs. ExPASy TrEMBL
Match: A0A6J1GC90 (uncharacterized protein LOC111452648 OS=Cucurbita moschata OX=3662 GN=LOC111452648 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.43e-21
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 1   MALLKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEARTNG----------- 60
           +ALLK PPPKLCGSPNGPPLTSPR    DGRHLAYKE GVR+EEAR N            
Sbjct: 19  VALLKPPPPKLCGSPNGPPLTSPRIKLSDGRHLAYKELGVRKEEARYNIIISHGLYSCKD 78

Query: 61  -------------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                        +  +++ +R G+CESDPY SRS++T+ 
Sbjct: 79  MDLPISQERMEELKLYIVIYDRAGHCESDPYPSRSVKTEA 118

[Close]

BLAST of Cp4.1LG02g10830 vs. ExPASy TrEMBL
Match: A0A6J1IBC1 (uncharacterized protein LOC111471974 OS=Cucurbita maxima OX=3661 GN=LOC111471974 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.47e-20
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 1   MALLKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR-----TNG------ 60
           +ALLK PPPKLCGSPNGPPLTSPR    DGRHLAYKE GVR+EEAR     ++G      
Sbjct: 19  VALLKPPPPKLCGSPNGPPLTSPRVKLSDGRHLAYKELGVRKEEARYKIVISHGIYSCKD 78

Query: 61  -------------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                        +  +++ +R G+CES+PY SRS++T+ 
Sbjct: 79  MDLPISQELMEEIKLYIVIYDRAGHCESNPYPSRSVKTEA 118

[Close]

BLAST of Cp4.1LG02g10830 vs. ExPASy TrEMBL
Match: A0A6J1EVY6 (uncharacterized protein LOC111438511 OS=Cucurbita moschata OX=3662 GN=LOC111438511 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.84e-16
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 4   LKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR-----TNG--------- 63
           LK PPPK+CGSPNGPPLTS R    DGRHLAY+EFGV +E+A+     ++G         
Sbjct: 21  LKPPPPKICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQYKIILSHGYNDSRQMHL 80

Query: 64  ----------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                      A ++L +R GY ESDPYSSRS +T+ 
Sbjct: 81  AASEELMEEINACIILYDRAGYGESDPYSSRSAKTEA 117

[Close]

BLAST of Cp4.1LG02g10830 vs. ExPASy TrEMBL
Match: A0A6J1I3C9 (uncharacterized protein LOC111469259 OS=Cucurbita maxima OX=3661 GN=LOC111469259 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.56e-15
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 4   LKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR-----TNG--------- 63
           LK PPPK+CGSPNGPPLTS R    DGRHLAY+EFGV +E+A+     ++G         
Sbjct: 21  LKPPPPKICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQHKIILSHGYNDSRHMYL 80

Query: 64  ----------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                      A ++L +R GY ESDPY SRS +T+ 
Sbjct: 81  AASQELMEELNACIILYDRAGYGESDPYPSRSAKTEA 117

[Close]

BLAST of Cp4.1LG02g10830 vs. ExPASy TrEMBL
Match: A0A6J1F1J0 (uncharacterized protein LOC111438510 OS=Cucurbita moschata OX=3662 GN=LOC111438510 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.03e-15
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 4   LKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR-----TNG--------- 63
           LK PPPK+CGSPNGPPLTS R    DGRHLAY+EFGV +E+A+     ++G         
Sbjct: 50  LKPPPPKICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQHKIILSHGYYDSRHMYL 109

Query: 64  ----------RAQVLLNNRVGYCESDPYSSRSIRTKV 72
                      A ++L +R GY ESDPY SRS +T+ 
Sbjct: 110 AASQELMEELNACIILYDRAGYGESDPYPSRSAKTEA 146

[Close]

BLAST of Cp4.1LG02g10830 vs. TAIR 10
Match: AT1G74280.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 4   LKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEA-------------RTNGR 63
           LK PPPKLCGS  GPP+T+PR    DGR+LAYKE G+  E+A             R +  
Sbjct: 41  LKPPPPKLCGSSGGPPITAPRIKLQDGRYLAYKEHGLPREKANRKIVFIHGSDCCRHDAV 100

Query: 64  AQVLLN--------------NRVGYCESDPYSSRSIRTKVPNM 76
              LL+              +R GYCESDP+ SR+ R+ V ++
Sbjct: 101 FATLLSPDLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDI 143

[Close]

BLAST of Cp4.1LG02g10830 vs. TAIR 10
Match: AT1G74290.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-10
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 4   LKLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEA-------------RTNGR 63
           LK P PKLCGS +GPP+T+PR    DGR+LAYKE G+  E+A             R +  
Sbjct: 41  LKPPQPKLCGSSSGPPITAPRIKLQDGRYLAYKEHGLPREKANRKIVFIHGSDCCRHDAV 100

Query: 64  AQVLLN--------------NRVGYCESDPYSSRSIRTKVPNM 76
              LL+              +R GYCESDP+ SR+ R+ V ++
Sbjct: 101 FATLLSPDLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDI 143

[Close]

BLAST of Cp4.1LG02g10830 vs. TAIR 10
Match: AT1G74300.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-10
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 2  ALLKLPPPKLCGSPNGPPLTSP----RDGRHLAYKEFGVREEEAR 43
          ++LK PPP LCGSP GPP+T+P    RDGRHLAYKE+G+  E+A+
Sbjct: 22 SILKPPPPNLCGSPGGPPITAPRIKLRDGRHLAYKEYGLPREKAK 66

[Close]

BLAST of Cp4.1LG02g10830 vs. TAIR 10
Match: AT3G54240.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 9.3e-10
Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 7   PPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR---------TNGRAQVLLNN 66
           PPPK CG+P GPP+T+PR    DGR+LAY+E GV  + A          +  R   ++ N
Sbjct: 28  PPPKRCGTPGGPPITAPRIRLSDGRYLAYEEHGVSRQNATFKIVFIHAFSTFRRDAVIAN 87

Query: 67  RV------------------GYCESDPYSSRSIRT 71
           RV                  GY ESDP+SSR+ +T
Sbjct: 88  RVRPGFLEKNGIYVVSYDRPGYGESDPHSSRNEKT 122

[Close]

BLAST of Cp4.1LG02g10830 vs. TAIR 10
Match: AT5G22460.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 5   KLPPPKLCGSPNGPPLTSPR----DGRHLAYKEFGVREEEAR-----TNG---------- 64
           K PPP++CG PNGPP+TSPR    DGR+LAY+E GV  + A       +G          
Sbjct: 22  KPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDRDNANYKIIVVHGFNSSKDTEFP 81

Query: 65  ---------RAQVLLNNRVGYCESDPYSSRSIRTK 72
                        +  +R GY ESDP+ SR+++++
Sbjct: 82  IPKDVIEELGIYFVFYDRAGYGESDPHPSRTVKSE 116

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g10830 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g10830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949234.1	5.02e-21	51.00	uncharacterized protein LOC111452648 [Cucurbita moschata]	[more]
KAG6607512.1	1.90e-20	51.00	RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyr...	[more]
XP_022973430.1	7.17e-20	50.00	uncharacterized protein LOC111471974 [Cucurbita maxima]	[more]
XP_023523439.1	2.70e-19	50.00	uncharacterized protein LOC111787652 [Cucurbita pepo subsp. pepo]	[more]
XP_022932192.1	9.99e-16	48.45	uncharacterized protein LOC111438511 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG02g10830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GC90	2.43e-21	51.00	uncharacterized protein LOC111452648 OS=Cucurbita moschata OX=3662 GN=LOC1114526...	[more]
A0A6J1IBC1	3.47e-20	50.00	uncharacterized protein LOC111471974 OS=Cucurbita maxima OX=3661 GN=LOC111471974...	[more]
A0A6J1EVY6	4.84e-16	48.45	uncharacterized protein LOC111438511 OS=Cucurbita moschata OX=3662 GN=LOC1114385...	[more]
A0A6J1I3C9	2.56e-15	47.42	uncharacterized protein LOC111469259 OS=Cucurbita maxima OX=3661 GN=LOC111469259...	[more]
A0A6J1F1J0	3.03e-15	47.42	uncharacterized protein LOC111438510 OS=Cucurbita moschata OX=3662 GN=LOC1114385...	[more]

BLAST of Cp4.1LG02g10830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74280.1	1.7e-11	40.78	alpha/beta-Hydrolases superfamily protein	[more]
AT1G74290.1	1.1e-10	39.81	alpha/beta-Hydrolases superfamily protein	[more]
AT1G74300.1	1.1e-10	62.22	alpha/beta-Hydrolases superfamily protein	[more]
AT3G54240.1	9.3e-10	38.95	alpha/beta-Hydrolases superfamily protein	[more]
AT5G22460.1	1.2e-09	36.84	alpha/beta-Hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g10830.1	Cp4.1LG02g10830.1	mRNA