Cp4.1LG02g10790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAGAAGTTGATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGGTAAGCCTTTGATACTCCTTCTAACACCCAAATATGTTGTTTCAATCGCTTAAGTTCTTGCAAATCATTGCATTGCAGATCAATCAAAGACTTGCCCACAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACACTGAATCAATGGCAAGGAATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCCATGGTGCCAACTCTCGCATTTGCCGTTGCAATGTTGTCTGTCGCTAA ATGGAGAAGAAGTTGATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGTTCTTGCAAATCATTGCATTGCAGATCAATCAAAGACTTGCCCACAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACACTGAATCAATGGCAAGGAATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCCATGGTGCCAACTCTCGCATTTGCCGTTGCAATGTTGTCTGTCGCTAA ATGGAGAAGAAGTTGATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGTTCTTGCAAATCATTGCATTGCAGATCAATCAAAGACTTGCCCACAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACACTGAATCAATGGCAAGGAATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCCATGGTGCCAACTCTCGCATTTGCCGTTGCAATGTTGTCTGTCGCTAA MEKKLMSFGLLSFLLLSLVSNSHSIVLANHCIADQSKTCPQEFHSKGTCGHWTGISECYTESMARNGNIPPKGCECIPHGANSRICRCNVVCR Homology
BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KAG6607502.1 (hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 145 bits (367), Expect = 2.27e-43 Identity = 71/93 (76.34%), Postives = 80/93 (86.02%), Query Frame = 0
BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KAG6607501.1 (hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 135 bits (341), Expect = 2.29e-39 Identity = 67/92 (72.83%), Postives = 73/92 (79.35%), Query Frame = 0
BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KGN52690.1 (hypothetical protein Csa_007932 [Cucumis sativus]) HSP 1 Score: 106 bits (265), Expect = 8.51e-28 Identity = 57/93 (61.29%), Postives = 65/93 (69.89%), Query Frame = 0
BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KGN52689.1 (hypothetical protein Csa_008701 [Cucumis sativus]) HSP 1 Score: 78.6 bits (192), Expect = 6.89e-17 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0
BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KAG6607504.1 (hypothetical protein SDJN03_00846, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 55.1 bits (131), Expect = 1.18e-07 Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 0
BLAST of Cp4.1LG02g10790 vs. ExPASy TrEMBL
Match: A0A0A0KSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1) HSP 1 Score: 106 bits (265), Expect = 4.12e-28 Identity = 57/93 (61.29%), Postives = 65/93 (69.89%), Query Frame = 0
BLAST of Cp4.1LG02g10790 vs. ExPASy TrEMBL
Match: A0A0A0KUV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 3.34e-17 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0
BLAST of Cp4.1LG02g10790 vs. ExPASy TrEMBL
Match: B9SXK1 (Protein SCRL10, putative OS=Ricinus communis OX=3988 GN=RCOM_0504130 PE=4 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 2.46e-05 Identity = 22/61 (36.07%), Postives = 33/61 (54.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|