Cp4.1LG02g10790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g10790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG02: 9353245 .. 9353580 (+)
RNA-Seq ExpressionCp4.1LG02g10790
SyntenyCp4.1LG02g10790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAAGTTGATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGGTAAGCCTTTGATACTCCTTCTAACACCCAAATATGTTGTTTCAATCGCTTAAGTTCTTGCAAATCATTGCATTGCAGATCAATCAAAGACTTGCCCACAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACACTGAATCAATGGCAAGGAATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCCATGGTGCCAACTCTCGCATTTGCCGTTGCAATGTTGTCTGTCGCTAA

mRNA sequence

ATGGAGAAGAAGTTGATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGTTCTTGCAAATCATTGCATTGCAGATCAATCAAAGACTTGCCCACAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACACTGAATCAATGGCAAGGAATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCCATGGTGCCAACTCTCGCATTTGCCGTTGCAATGTTGTCTGTCGCTAA

Coding sequence (CDS)

ATGGAGAAGAAGTTGATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGTTCTTGCAAATCATTGCATTGCAGATCAATCAAAGACTTGCCCACAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACACTGAATCAATGGCAAGGAATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCCATGGTGCCAACTCTCGCATTTGCCGTTGCAATGTTGTCTGTCGCTAA

Protein sequence

MEKKLMSFGLLSFLLLSLVSNSHSIVLANHCIADQSKTCPQEFHSKGTCGHWTGISECYTESMARNGNIPPKGCECIPHGANSRICRCNVVCR
Homology
BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KAG6607502.1 (hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 2.27e-43
Identity = 71/93 (76.34%), Postives = 80/93 (86.02%), Query Frame = 0

Query: 1  MEKK-LMSFGLLSFLLLSLVSNSHSIVLANHCIADQSKTCPQEFHSKGTCGHWTGISECY 60
          MEKK +MSFGLLSFL+LSLVS+SHS+        DQSKTCP+EFHS GTCG WTG+SECY
Sbjct: 1  MEKKFIMSFGLLSFLVLSLVSSSHSM--------DQSKTCPEEFHSTGTCGDWTGVSECY 60

Query: 61 TESMARNGNIPPKGCECIPHGANSRICRCNVVC 92
          +ESMAR+GNIPPKGCECIP GA+SRICRCN VC
Sbjct: 61 SESMARHGNIPPKGCECIPKGADSRICRCNAVC 85

BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KAG6607501.1 (hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (341), Expect = 2.29e-39
Identity = 67/92 (72.83%), Postives = 73/92 (79.35%), Query Frame = 0

Query: 1  MEKKLMSFGLLSFLLLSLVSNSHSIVLANHCIADQSKTCPQEFHSKGTCGHWTGISECYT 60
          M KKL+   LLSFLLLSLVSNSHS+        DQSKTCPQ+F S GTC  W GISECY+
Sbjct: 5  MGKKLICVALLSFLLLSLVSNSHSM--------DQSKTCPQQFRSTGTCAGWIGISECYS 64

Query: 61 ESMARNGNIPPKGCECIPHGANSRICRCNVVC 92
          ESMARNGNIPPKGC+CIP G +SRICRCNVVC
Sbjct: 65 ESMARNGNIPPKGCKCIPDGVDSRICRCNVVC 88

BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KGN52690.1 (hypothetical protein Csa_007932 [Cucumis sativus])

HSP 1 Score: 106 bits (265), Expect = 8.51e-28
Identity = 57/93 (61.29%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 1  MEKK-LMSFGLLSFLLLSLVSNSHSIVLANHCIADQSKTCPQEFHSKGTCGHWTGISECY 60
          MEKK  +S  LLSFLLL L S +HS         DQSKTCP +F S GTC    G+SECY
Sbjct: 1  MEKKTFISLPLLSFLLLCLFSIAHS-----QDSEDQSKTCPVKFASTGTCSGPFGVSECY 60

Query: 61 TESMARNGNIPPKGCECIPHGANSRICRCNVVC 92
           E+MA+ GNIPPKGCECIP GANSR C CN++C
Sbjct: 61 HEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88

BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KGN52689.1 (hypothetical protein Csa_008701 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 6.89e-17
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 34 DQSKTCPQEFHSKGTCGHWTGISECYTESMARNGNIPPKGCECIPHGANSRICRCNVVC 92
          DQ +TCP +F S GTC    G + CY E M + GN PPK C+CIP+G NSR C+CN+ C
Sbjct: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

BLAST of Cp4.1LG02g10790 vs. NCBI nr
Match: KAG6607504.1 (hypothetical protein SDJN03_00846, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 1.18e-07
Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 1  MEKKLMSFGLLSFLLLSLVSNSHSIVLANHCIADQSKTCPQEFHSKGTCGHWTGISECYT 60
          M K+LM FGL+   L+ LVS S S V         SKTC   FHS G C  W G+SECY+
Sbjct: 1  MGKRLMCFGLV---LICLVSISESAV--------PSKTCRDSFHSSGVCMGWIGLSECYS 59

Query: 61 ESMARNGNIP 70
          ESM +    P
Sbjct: 61 ESMGKAWGYP 59

BLAST of Cp4.1LG02g10790 vs. ExPASy TrEMBL
Match: A0A0A0KSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 4.12e-28
Identity = 57/93 (61.29%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 1  MEKK-LMSFGLLSFLLLSLVSNSHSIVLANHCIADQSKTCPQEFHSKGTCGHWTGISECY 60
          MEKK  +S  LLSFLLL L S +HS         DQSKTCP +F S GTC    G+SECY
Sbjct: 1  MEKKTFISLPLLSFLLLCLFSIAHS-----QDSEDQSKTCPVKFASTGTCSGPFGVSECY 60

Query: 61 TESMARNGNIPPKGCECIPHGANSRICRCNVVC 92
           E+MA+ GNIPPKGCECIP GANSR C CN++C
Sbjct: 61 HEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88

BLAST of Cp4.1LG02g10790 vs. ExPASy TrEMBL
Match: A0A0A0KUV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.34e-17
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 34 DQSKTCPQEFHSKGTCGHWTGISECYTESMARNGNIPPKGCECIPHGANSRICRCNVVC 92
          DQ +TCP +F S GTC    G + CY E M + GN PPK C+CIP+G NSR C+CN+ C
Sbjct: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

BLAST of Cp4.1LG02g10790 vs. ExPASy TrEMBL
Match: B9SXK1 (Protein SCRL10, putative OS=Ricinus communis OX=3988 GN=RCOM_0504130 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.46e-05
Identity = 22/61 (36.07%), Postives = 33/61 (54.10%), Query Frame = 0

Query: 34 DQSKTCP-QEFHSKGTCGHWTGISECYTESMARNG-NIPPKGCECIPHGANSRICRCNVV 92
          D  K CP QE    G+C  W    +C+ + + + G +  PK CEC   G + R+C C++V
Sbjct: 28 DDIKWCPKQEIFGGGSCPEWGPRYQCFLDFLGKYGASSMPKNCECQSSGTDKRLCTCDIV 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6607502.12.27e-4376.34hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607501.12.29e-3972.83hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN52690.18.51e-2861.29hypothetical protein Csa_007932 [Cucumis sativus][more]
KGN52689.16.89e-1754.24hypothetical protein Csa_008701 [Cucumis sativus][more]
KAG6607504.11.18e-0747.14hypothetical protein SDJN03_00846, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KSV34.12e-2861.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1[more]
A0A0A0KUV43.34e-1754.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1[more]
B9SXK12.46e-0536.07Protein SCRL10, putative OS=Ricinus communis OX=3988 GN=RCOM_0504130 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010682Plant self-incompatibility responsePFAMPF06876SCRLcoord: 33..89
e-value: 9.5E-5
score: 22.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g10790.1Cp4.1LG02g10790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction