Cp4.1LG02g10690 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g10690
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	regulator of nonsense transcripts UPF3-like isoform X1
Location	Cp4.1LG02: 9385707 .. 9391919 (+)
RNA-Seq Expression	Cp4.1LG02g10690
Synteny	Cp4.1LG02g10690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATATATTTCTCCGTCTTTTGCTAAAAATTGTTGAGAAATTTAGAAACAAAAACCAAAGGGTAAAAGGCAGAAAGGAATTTGTGAATTGCTCTTCTTCTTCTTCTTCCCATTGTGGGGGTTTTTCAGATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCAGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGGTTCCACTTTTCTCCTCCTCCTCCTCCTCCTCTAATTTCCTTCTAATTTCATCTTTCCCGCACATAAATTAGTATTACCAACTGGGTTTTCAGTTTCCACAAATCTGGACCTTCACTTAGCCTAACCGCGTACTGGGTTTTTTTCTTTCTCCTTTTTCCCCCTTCCTCCTTTCTGGGGTTGGGGGGTTTCTCTGATTACAATCATGTTCACCACTTCTTTCTCCTTCCTCCATTTTGGGTTTTCCTCATTACCAATGCCCCTTACTTACTATACTTCCTGCTTTTTCTTCTCTTTTGTCTTGGATTCTCTGGACTAAGCCTCACAATACTGAAACTTTTTTACTCATTCAGAGGTTTCTTCTGAAATAATTTTGCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATAGATTTTACCATTCCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTAAAGATGACATCTTTTTTTGAAGCTCAATTCTTTTCTGATAAGTGGGTGATAACAATTTTATGCTTAATGCTGATTGATGATATATGTAGAGATTGCATTACCCCTTTTGAAGCTTAGTTTTTAATTGACTGCATACCAGTTTAGCTTATTTCAGTTAAATGGTTACAGGTGCTCAGTATAAGGCTGTAGTTGAATACGCACCTTCGCAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGGTAAGCATCAGTTAGTGAGAAGATGGAATAAGTGGTTGTTCTTGTTTTATATTGCATATTGTGTTATGTGAACTATCTTTTCTTGATGAAAGCAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTGCTGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTTTGTTATTATGTTCATGGACGACTTGTTGACGTTTCTTGCATTTGTTAAATCTTATGTGGAACGAGGCCAAATAAGTTATATAATGTAAAATAGGGTGCCAAAAAGTCGCTGAGTAGTCATTCTGTAACTTTGCTATGAACGGCTGCAGAGATACTACTCGGTTCAAATTCGGATAGTCTAGAAGTTTTATATGGCTACTTTTGTTTTGCAGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGGTGATATTCTTAACACATCGACCTGTGTGCTATATCTTAAAATTTCAGAGAAAATGAAACTACTTGTTTACAAAAATGAAGGTCACAAGGTATTGGTTCTGTCTGAACACCTATATTAATATTTATACATTCACTTACCATTAAGTTGACATTCCTTCGTTTGAATTTGTCTGCTGCTTGTGTAACGATTTCAGCTTCTTTTCCTTTCTTACGAGTTAACGACATGCATGCTATTAATTCCGATGCTCTTAGGATGGTTGTCTATGTGGTCTTGAAGACTTTTATTTTCCTCTTCCAATTTATAATACATCAATTTCTCACTATCTCATGTAAGTTTTTTCATTCAATAGGGATCTTCAGTGCCTCGGAAGGTTAAAAGAGGTGTTGCAGCATCCTCTAGAAAACATGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTCCTACTTTTCCAATGTTTTTTTTTCCTAAGGTTTTTAGAGTTCGTAAATGTTAGTTTCTTAGGGGAAGTATGCTGTCTTGTCTTGTCGTAGATCTCAGAAACGAACAAAGAATAAGACCTAAAGGATGATTATAAAAATCCTTAAAGAGAGGCATTAGACCTAGTGAAGGATCCAACGAGTCCCAAGAACTCTCGAAACCTTTTAAGATTCTCTTGTTACTCTCTAGCCATATTCCGTTAAGCGGCAAGAAACTAGTGAAATATTTTATGACCTCGATCTAACCACAATCTTTATGACAAACCAAGAAAACTCCTAAGGCCTCACAAAAAGTTGTAAATCAAGGTATCAAAAGGATATGATCTAGATCCTCAAACACTCGTGATTTTAACCATTTTAGAATTACGTCCAAACATGCCCTAAAAATGCATTGGTGGTATGGCCTCAACACAAAGGAACATTGCCTCTGTATTTAGTCTATATGGTGTTAACTCCCCTAATGCAAGTTCTGCCACTCTCAAAACTTGATCTTCTAGGAAATTCTTACCTTCTACAATGAGGTAAAGCAGAAACTAATTAATACAGAGCCTAAAGTTTCGACTCTACCGAACTCAACCTAAAGTTTCTAACGTTATTGGTGGGGTTAGTATTTATATGATTTAAGTTTTGTCTAACTGGGATTGAAACTGTCTCATGCCACACCACCTCGAGGTTATGAACAGTGAGCGCTAAAATTGAGTCTTTAGGTTAGCCCCCTTAAATTTCATGCTTTTACTGTGGTGATCCTTTCTTGTGAATAATTTATAGTCATATCTTTTTGGTCTGAAGATTTTAGTTATATTTTCTTTTATACATGCAGTATATTTTAAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGGTTAGATTTCTTTGTGATCAGCAACATTATTTAAGTTGCCATTATTTTTATCCTTCTCAGTTACTGGTCCATTGATTGTTAGACTGTTGAAAATGAGTCTGATTTATATTATCTCAGCGATTCTATGCTTCAAGTCATTAGGAGCAGGGGAACATTAGCCTATATGGTTTAAGATCTGAACACTTGTTATTCCACTGCCTACGATGGGGCGAGCTCTTATAACTATTTTACGTTTTTCGCATTACTAATTACCCTGAGCCCAGTAGTAATGTTCTTGAAAATGTCTTTTTTTCCCCCTTGATTAGTAATTATCTTGTTTATTTCTTGGATTTTGTCATATTGTGATGTGCAGATCACAAACTTGCATGTTAACATATACATTATTAGCTATGGAGCACATATCCATTGTTGTATTATATTATGTCCATCAGGAAAAGAGGGAGAAAACAATGTCCTCCATTAGATAATGCATTCTCCTGCATATCAATATGCTCTACATATTTATAACGAATTCGTCGTCTAGATTTGAAGGCTCTGTTTCATATGTCTATGTAACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGCCGAGACGTATCTCATGTATGTTTCTTAAGTTCTCTTTACTAATTATGTTATTACATCTTTTGTTACTCTCTTTTTCTTTAGATATTAACTTCTGTGAATGATCTCGATTCTCACTCTAGGCTAACTTGGTGGGTACCAATTCTGTTCTTTTGCCTCATACTTTGACACTTACCTTATCTAGTTCATGCATAATGATACCTTTACAGATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTTCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAGAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGGTACTACTACTATTATAACCCATTGGGGATGACGAGACTACTTGCTTGTGTATTATACCGGACAATGATCGAAGTATTACGTTGTGTTCCAGATATGAAATTATAACTCTAATTATCTTTAATGCCTTTACAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTATACTTTCTCACAAACCTTCTTAATATTGTCCATCACTTATTTTAGGAGATATCCAAAGGTACTCACCTTCTGTGCTTCTCTAGGTTCGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAAAAGAGGTGTTGCAGGTGGCCATGAGGTTTGGTTCTGCATCTAAGCTAAATGACTAACTCTCATGCTACACAATCACTTCTTTTTCAGAAACTCATTTGCTTTGATGCATATATGCAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAACATATTTAAAACATGTGAGTTCTTTTAATTATTAGCAAAACATTTGATCTCCTTTAAGACTAAAACCAAGATTATGACATGGTTCTCCATTGGACGATGACGATGTGTGTAATCTGTCGAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTGTCTCCATTTCTGAGGATTAAAAAATGCACATCCTCAGAGGGCATTCACCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGCAAGATTTGCAATTGTTTTGTCGTATACAGGTGGTAACAAAACAAACACAAAGTTCTCTGGTTGAAGATCGAATATGCATGCGTTCTTAGAATTTTTGGTTTTACGAAATCAAAGTTTCATTGGTTGAAGACCAAATATGGTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTGCCCAACATACCAAGTGTGATTGCTTCACCTGGACGAACGTGTCGGTGTCGGTATATACACATACGTGGTTTGAGTGACAGGATATCAAAGCCAAGAGGGAGGTTCCTTCCAACTTTCCCGTTGCTTCATGTTTTGGTCATATGCCAAGTTTTCTTTCCCTTAGAAGAAGCTGAATGTAGAAAGTACCTAGTAGTACTGTACTTACCATAATCTCACAAGGGTGTTTGGTTTGGTACACATTTGTTCTTCGATTCCATGCGTGGGGCAGTGAATCAGAAACATCAAACTTATACTCTTTCATGTCGTAGATGGGCATTGTGATGGATGATTATGATATGTGTTTCTGTCGACTAATATATAATACTTTTATTTATTCTTTCTGCTCATATTCAACTCATTCAATTAGATTTGCAGATTATTATGTTAAATTCATGAACCAGATGCCTTCTTATTGCTTCAAAATCGACATGAATGAAACTCTAATCCAACACTTCGTATCTTTACAAGAAAAATTATGGTTCTTTATATATCACTAGAACTTCTAACACCAGAACATGACTGATTTCCATCCACAATTTGTTTGGTTCTGCTATAAATAAGTAACTTCAAAAGGAAAAAGAGAAAAAAAAAAAATATTTTTGTTCTTTCTGTTAGACAGATTTGAGTAAGAGAGGCCTAGTTTTTATGGTATTTGAGCGATTTCCAGGAGGATCTTGTGCAGTGACTGTGGCTTAGAGAAAAAAGGACAATGATCACTGCCTTTGATCTTGAAAACTCTTTCAGGTGGGTTTTCCCTCACCAGCCTTTCTTGAACATCAGGTGAGAGTGCACGATCGTCGAGCGTTTGAACGAAGAATCGACGCCCGCTTCCATAGTTTTGGGGCGACAGTGAGAGCTTCTCCATGACTGGACCCAGTGGGAAAGGTCTCATGGAAACCATAGCCAAAGC

mRNA sequence

AAATATATTTCTCCGTCTTTTGCTAAAAATTGTTGAGAAATTTAGAAACAAAAACCAAAGGGTAAAAGGCAGAAATTCTTCTTCCCATTGTGGGGGTTTTTCAGATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCAGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATAGATTTTACCATTCCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATACGCACCTTCGCAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTGCTGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGGGATCTTCAGTGCCTCGGAAGGTTAAAAGAGGTGTTGCAGCATCCTCTAGAAAACATGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTCCTACTTTTCCAATGTTTTTTTTTCCTAAGTATATTTTAAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGCCGAGACGTATCTCATGCTAACTTGGTGGGTACCAATTCTGTTCTTTTGCCTCATACTTTGACACTTACCTTATCTAGTTCATGCATAATGATACCTTTACAGATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTTCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAGAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTCGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAAAAGAGGTGTTGCAGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTGTCTCCATTTCTGAGGATTAAAAAATGCACATCCTCAGAGGGCATTCACCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGCAAGATTTGCAATTGTTTTGTCGTATACAGGTGGTAACAAAACAAACACAAAGTTCTCTGGTTGAAGATCGAATATGCATGCGTTCTTAGAATTTTTGGTTTTACGAAATCAAAGTTTCATTGGTTGAAGACCAAATATGGTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTGCCCAACATACCAAGTGTGATTGCTTCACCTGGACGAACGTGTCGGTGTCGGTATATACACATACGTGGTTTGAGTGACAGGATATCAAAGCCAAGAGGGAGGTTCCTTCCAACTTTCCCGTTGCTTCATGTTTTGGTCATATGCCAAGTTTTCTTTCCCTTAGAAGAAGCTGAATGTAGAAAGTACCTAGTAGTACTGTACTTACCATAATCTCACAAGGGTGTTTGGTTTGGTACACATTTGTTCTTCGATTCCATGCGTGGGGCAGTGAATCAGAAACATCAAACTTATACTCTTTCATGTCGTAGATGGGCATTGTGATGGATGATTATGATATGTGTTTCTGTCGACTAATATATAATACTTTTATTTATTCTTTCTGCTCATTTCGTATCTTTACAAGAAAAATTATGGTTCTTTATATATCACTAGAACTTCTAACACCAGAACATGACTGATTTCCATCCACAATTTGTTTGGTTCTGCTATAAATAAGTAACTTCAAAAGGAAAAAGAGAAAAAAAAAAAATATTTTTGTTCTTTCTGTTAGACAGATTTGAGTAAGAGAGGCCTAGTTTTTATGGTATTTGAGCGATTTCCAGGAGGATCTTGTGCAGTGACTGTGGCTTAGAGAAAAAAGGACAATGATCACTGCCTTTGATCTTGAAAACTCTTTCAGGTGGGTTTTCCCTCACCAGCCTTTCTTGAACATCAGGTGAGAGTGCACGATCGTCGAGCGTTTGAACGAAGAATCGACGCCCGCTTCCATAGTTTTGGGGCGACAGTGAGAGCTTCTCCATGACTGGACCCAGTGGGAAAGGTCTCATGGAAACCATAGCCAAAGC

Coding sequence (CDS)

ATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCAGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATAGATTTTACCATTCCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATACGCACCTTCGCAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTGCTGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGGGATCTTCAGTGCCTCGGAAGGTTAAAAGAGGTGTTGCAGCATCCTCTAGAAAACATGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTCCTACTTTTCCAATGTTTTTTTTTCCTAAGTATATTTTAAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGCCGAGACGTATCTCATGCTAACTTGGTGGGTACCAATTCTGTTCTTTTGCCTCATACTTTGACACTTACCTTATCTAGTTCATGCATAATGATACCTTTACAGATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTTCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAGAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTCGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAAAAGAGGTGTTGCAGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTGTCTCCATTTCTGAGGATTAAAAAATGCACATCCTCAGAGGGCATTCACCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGCAAGATTTGCAATTGTTTTGTCGTATACAGGTGGTAA

Protein sequence

MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSSSCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSDNGIQTGLWFLKLPGGLSPFLRIKKCTSSEGIHHVKWRYALEAVGNSNRFRELDCKICNCFVVYRW

Homology

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy Swiss-Prot
Match: Q9FVW4 (Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 PE=1 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.2e-102
Identity = 253/572 (44.23%), Postives = 321/572 (56.12%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA RYN   +RPGK+S K Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQG-SSVP 180
           FLK+IA+P E+LPSAEIQLER+EAEQSG +K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 181 RKVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILV 240
           R  +R    S+ K      KR  EKK            KY+ K+S KN  R+  ++ +  
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKK------------KYVEKESSKNVPRKTTAD-VSS 240

Query: 241 PRREDQSATSSG-----------IGISDVG---TADSGKKKILLLKGKGRDVSHANLVGT 300
            + + + + SSG           I  S  G   T DSGKKKILLL+ K RD         
Sbjct: 241 SKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRD--------- 300

Query: 301 NSVLLPHTLTLTLSSSCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRS 360
           N    P              P Q  D  L   S  S         +QNQ+ + GG +I+ 
Sbjct: 301 NPDNPPPQ------------PEQHIDTNLSRNSTDS---------RQNQKSDVGGRLIKG 360

Query: 361 ILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDG 420
           ILL ND+R  QSS+  QS Q+++   ++N KRP R  N+R+G                  
Sbjct: 361 ILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTRAG------------------ 420

Query: 421 KRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPR--GRSDASVSQLDESSVSQ 480
                     K++H  G  SEKQE+R RNKDRPDR +WAPR  G  D  +S    +    
Sbjct: 421 ----------KDYHTSGTISEKQERRTRNKDRPDRVMWAPRRDGSEDQPLSSAGNN---- 480

Query: 481 STHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDG 540
                        GE+KD +   R+G+V  +  G   ++ENGS RH  RR      K++ 
Sbjct: 481 -------------GEVKDRMFSQRSGEVVNSSGGH--TLENGSARHSSRRVGGRNRKEEV 480

Query: 541 SLNPNEGKPSKRGVAGG---HEKQVWVQKSSS 553
            +   EGK S+RG  GG   HEKQ+W+QK SS
Sbjct: 541 VI--GEGKTSRRGSGGGPSSHEKQMWIQKPSS 480

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy Swiss-Prot
Match: B0S733 (Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 5.3e-20
Identity = 71/208 (34.13%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVF 67
           +KVVIR LPPSL    L  H+    +  Y   +  P   S     ++RAYI+F  PED+ 
Sbjct: 43  SKVVIRRLPPSLSKDQLQEHLSPLPSFDYFEFF--PADQSLYPHLFSRAYINFKNPEDII 102

Query: 68  EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-SKKDGREGTIYKDPDYLEFL---- 127
            F + FDG+VF++ KG +Y AVVE+AP Q+V +    KKD + GTI +DP+Y  FL    
Sbjct: 103 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYS 162

Query: 128 ----KLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSV 187
               K +A P   L   EI+ + +E     +AK T   TPL+E+++ K+  +   +    
Sbjct: 163 CDEEKSMANPETLL--GEIEAKTREL----IAKRT---TPLLEYIKNKKLEKQRIREEKR 222

Query: 188 PRKVKRGVAASSRKHESNSMKRGMEKKK 207
             + +R +    ++ E    +R  E++K
Sbjct: 223 EERRRRELEKKRQREEEKRKRREEERQK 239

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy Swiss-Prot
Match: Q9BZI7 (Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 9.0e-20
Identity = 76/217 (35.02%), Postives = 111/217 (51.15%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTI 67
           +KVVIR LPP+L    L  H+     HD F        +    TS     YARAYI+F  
Sbjct: 51  SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE-------FFSNDTSLYPHMYARAYINFKN 110

Query: 68  PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKK-DGREGTIYKDPDYLEF 127
            ED+  F + FDG+VF++ KG +Y A+VE+AP Q+  +  +KK D + GTI  DP+Y +F
Sbjct: 111 QEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKF 170

Query: 128 LKLIAKPAEHLPSA-EIQLERKEAE-QSGVAKDTPIVTPLMEFVRQKRAVESGTQGS--- 187
           L+  A   E + S  E  LE  EA+ +  +AK T   TPL+ F++ K+ +    +     
Sbjct: 171 LESYATDNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKREERRR 230

Query: 188 -SVPRKVKRGVAASSRKHESNSMKRGMEKKKACPTFP 213
             + RK +R       K E    ++ +EK K     P
Sbjct: 231 REIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRIP 257

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy Swiss-Prot
Match: Q9H1J1 (Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-15
Identity = 62/202 (30.69%), Postives = 103/202 (50.99%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVF 67
           +KVVIR LPP L    L   +    A  Y   +      S     Y+RAYI+F  P+D+ 
Sbjct: 68  SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF--AADLSLYPHLYSRAYINFRNPDDIL 127

Query: 68  EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-SKKDGREGTIYKDPDYLEFLKLIA 127
            F + FDG++F++ KG +Y AVVE+AP Q++ +    KKD + G+I  DP+Y +FL+   
Sbjct: 128 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 187

Query: 128 KPAEHL-PSAEIQLERKEAE-QSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPRKVKR 187
              E    + E  L   EA+ +  +A+ T   TPL+E+++ ++  +   +      + +R
Sbjct: 188 VEEEKTSANPETLLGEMEAKTRELIARRT---TPLLEYIKNRKLEKQRIREEKREERRRR 247

Query: 188 GVAASSRKHESNSMKRGMEKKK 207
            +     + E    +R  E+ K
Sbjct: 248 ELEKKRLREEEKRRRREEERCK 264

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy Swiss-Prot
Match: Q10267 (Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=upf3 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-10
Identity = 70/272 (25.74%), Postives = 118/272 (43.38%), Query Frame = 0


Query: 9   KVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTS--QKEQRYARAYIDFTIPEDV 68
           KV++ +LPP+LP       I+  F        +  GK +   + +  + AY+ F     V
Sbjct: 13  KVLVFNLPPTLPEQVFLQSINS-FLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAV 72

Query: 69  FEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIA 128
            EF   + GH F+++K   Y+A+V  AP Q++P S  K D  EG++ +DP + EF     
Sbjct: 73  QEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF----- 132

Query: 129 KPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKR--AVESG---TQGSSVPRK 188
                    + +   + A    V +     TPL++++ +K+   VE G       SV  K
Sbjct: 133 -------KVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKNAVVEKGKSKPSKKSVKAK 192

Query: 189 VKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVPR 248
            K  +A     + S + K   E KK+    P       I +D   +  +  K      P+
Sbjct: 193 KKLRLAEKPASNNSKAGKSSQESKKSSKA-PAESAAAVIKEDKVSDRKKSKKK-----PK 252

Query: 249 R---EDQSATSSGIGISDVGTAD---SGKKKI 268
           +    + +A+ +    SD  T +   SGK+KI
Sbjct: 253 KTPVSNSTASQASENASDKKTKEKKSSGKQKI 265

[Close]

BLAST of Cp4.1LG02g10690 vs. NCBI nr
Match: KAG7037154.1 (Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1028 bits (2659), Expect = 0.0
Identity = 541/618 (87.54%), Postives = 541/618 (87.54%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
                                                 YILKDSGKNTNRRDKSNFILVP
Sbjct: 346 --------------------------------------YILKDSGKNTNRRDKSNFILVP 405

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 406 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 465

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                   IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 466 --------IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 525

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKR MENKFNKKEHHG
Sbjct: 526 AQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHG 585

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 586 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 645

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENG VRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG
Sbjct: 646 DDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 705

Query: 541 HEKQVWVQKSSSDNGIQTGLWFLKLPGGLSPFLRIKKCTSSEGIHHVKWRYALEAVGNSN 600
           HEKQVWVQKSSSDNGIQTGLWFLKLPGGLSPFLRIKKCTSSEGIHHVKWRYALEAVGNSN
Sbjct: 706 HEKQVWVQKSSSDNGIQTGLWFLKLPGGLSPFLRIKKCTSSEGIHHVKWRYALEAVGNSN 710

Query: 601 RFRELDCKICNCFVVYRW 618
           RFRELDCKICNCFVVYRW
Sbjct: 766 RFRELDCKICNCFVVYRW 710

[Close]

BLAST of Cp4.1LG02g10690 vs. NCBI nr
Match: XP_023523934.1 (regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 960 bits (2482), Expect = 0.0
Identity = 511/552 (92.57%), Postives = 511/552 (92.57%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRGVAASSRKHESNSMKRGMEKKK            YILKDSGKNTNRRDKSNFILVP
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK------------YILKDSGKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                   IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 301 --------IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG
Sbjct: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 511

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 511

[Close]

BLAST of Cp4.1LG02g10690 vs. NCBI nr
Match: XP_022948756.1 (regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 957 bits (2474), Expect = 0.0
Identity = 509/552 (92.21%), Postives = 510/552 (92.39%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRGVAASSRKHESNSMKRGMEKKK            YILKDSGKNTNRRDKSNFILVP
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK------------YILKDSGKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                   IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 301 --------IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPS+RGVAGG
Sbjct: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSRRGVAGG 511

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 511

[Close]

BLAST of Cp4.1LG02g10690 vs. NCBI nr
Match: XP_022973412.1 (regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 954 bits (2466), Expect = 0.0
Identity = 508/552 (92.03%), Postives = 509/552 (92.21%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYN CY+RPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRGVAASSRKHESNSMKRGMEKKK            YILKDSGKNTNRRDKSNFILVP
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK------------YILKDSGKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                   IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 301 --------IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG
Sbjct: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 511

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 511

[Close]

BLAST of Cp4.1LG02g10690 vs. NCBI nr
Match: XP_023523936.1 (regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 944 bits (2441), Expect = 0.0
Identity = 504/552 (91.30%), Postives = 504/552 (91.30%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRGVAASSRKHESNSMKRGMEKKK            YILKDSGKNTNRRDKSNFILVP
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK------------YILKDSGKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                          FQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 301 ---------------FQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG
Sbjct: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 504

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 504

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy TrEMBL
Match: A0A6J1GA31 (regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452331 PE=3 SV=1)

HSP 1 Score: 957 bits (2474), Expect = 0.0
Identity = 509/552 (92.21%), Postives = 510/552 (92.39%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRGVAASSRKHESNSMKRGMEKKK            YILKDSGKNTNRRDKSNFILVP
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK------------YILKDSGKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                   IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 301 --------IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPS+RGVAGG
Sbjct: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSRRGVAGG 511

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 511

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy TrEMBL
Match: A0A6J1I7G4 (regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471962 PE=3 SV=1)

HSP 1 Score: 954 bits (2466), Expect = 0.0
Identity = 508/552 (92.03%), Postives = 509/552 (92.21%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYN CY+RPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRGVAASSRKHESNSMKRGMEKKK            YILKDSGKNTNRRDKSNFILVP
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK------------YILKDSGKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                   IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 301 --------IADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG
Sbjct: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 511

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 511

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy TrEMBL
Match: A0A6J1GA46 (regulator of nonsense transcripts UPF3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452331 PE=3 SV=1)

HSP 1 Score: 941 bits (2433), Expect = 0.0
Identity = 502/552 (90.94%), Postives = 503/552 (91.12%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRGVAASSRKHESNSMKRGMEKKK            YILKDSGKNTNRRDKSNFILVP
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK------------YILKDSGKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                          FQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 301 ---------------FQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPS+RGVAGG
Sbjct: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSRRGVAGG 504

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 504

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy TrEMBL
Match: A0A6J1ICZ5 (regulator of nonsense transcripts UPF3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471962 PE=3 SV=1)

HSP 1 Score: 938 bits (2425), Expect = 0.0
Identity = 501/552 (90.76%), Postives = 502/552 (90.94%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYN CY+RPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRGVAASSRKHESNSMKRGMEKKK            YILKDSGKNTNRRDKSNFILVP
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK------------YILKDSGKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH                     
Sbjct: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                          FQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV
Sbjct: 301 ---------------FQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK
Sbjct: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG
Sbjct: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 504

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 504

[Close]

BLAST of Cp4.1LG02g10690 vs. ExPASy TrEMBL
Match: A0A0A0KSY5 (Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 PE=3 SV=1)

HSP 1 Score: 867 bits (2241), Expect = 1.69e-313
Identity = 463/552 (83.88%), Postives = 487/552 (88.22%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGR+N  YYRPGKTSQK+QRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           T PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS+KKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILVP 240
           KVKRG AASSRK ESNSMKRGMEKKK            YILKDS KNTNRRDKSNFILVP
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK------------YILKDSVKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHANLVGTNSVLLPHTLTLTLSS 300
           RREDQSATSS IGISDVGTAD GKKKILLLKGK RD+SH                     
Sbjct: 241 RREDQSATSSAIGISDVGTADFGKKKILLLKGKERDISH--------------------- 300

Query: 301 SCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSV 360
                   ++D MLQ QSATSSGNSPA+A+K N RREAGG +IRSILLNN+ARHGQSSSV
Sbjct: 301 --------VSDDMLQLQSATSSGNSPASASKHNHRREAGGGVIRSILLNNEARHGQSSSV 360

Query: 361 AQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHG 420
           AQSHQKIQILNSDNGKRPPR  N+RSGSND+SSN+PNPSGSEGDGKRA +NKF+KKE HG
Sbjct: 361 AQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHG 420

Query: 421 LGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMK 480
           LG+ASEKQEKRIRNKDRPDRGVWAPR RSDASVSQL+ESSV QS+HLLSDSVEA+RGEMK
Sbjct: 421 LGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVPQSSHLLSDSVEAFRGEMK 480

Query: 481 DDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGG 540
           +D+HGSRTGDVTT VSGR+SSVENGSVRHVGRRGA H+MKDDGSLNPNEGKPSKRGVAGG
Sbjct: 481 EDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG 511

Query: 541 HEKQVWVQKSSS 552
           HEKQVWVQKSSS
Sbjct: 541 HEKQVWVQKSSS 511

[Close]

BLAST of Cp4.1LG02g10690 vs. TAIR 10
Match: AT1G33980.1 (Smg-4/UPF3 family protein )

HSP 1 Score: 374.0 bits (959), Expect = 2.3e-103
Identity = 253/572 (44.23%), Postives = 321/572 (56.12%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA RYN   +RPGK+S K Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQG-SSVP 180
           FLK+IA+P E+LPSAEIQLER+EAEQSG +K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 181 RKVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFILV 240
           R  +R    S+ K      KR  EKK            KY+ K+S KN  R+  ++ +  
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKK------------KYVEKESSKNVPRKTTAD-VSS 240

Query: 241 PRREDQSATSSG-----------IGISDVG---TADSGKKKILLLKGKGRDVSHANLVGT 300
            + + + + SSG           I  S  G   T DSGKKKILLL+ K RD         
Sbjct: 241 SKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRD--------- 300

Query: 301 NSVLLPHTLTLTLSSSCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRS 360
           N    P              P Q  D  L   S  S         +QNQ+ + GG +I+ 
Sbjct: 301 NPDNPPPQ------------PEQHIDTNLSRNSTDS---------RQNQKSDVGGRLIKG 360

Query: 361 ILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDG 420
           ILL ND+R  QSS+  QS Q+++   ++N KRP R  N+R+G                  
Sbjct: 361 ILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTRAG------------------ 420

Query: 421 KRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPR--GRSDASVSQLDESSVSQ 480
                     K++H  G  SEKQE+R RNKDRPDR +WAPR  G  D  +S    +    
Sbjct: 421 ----------KDYHTSGTISEKQERRTRNKDRPDRVMWAPRRDGSEDQPLSSAGNN---- 480

Query: 481 STHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDG 540
                        GE+KD +   R+G+V  +  G   ++ENGS RH  RR      K++ 
Sbjct: 481 -------------GEVKDRMFSQRSGEVVNSSGGH--TLENGSARHSSRRVGGRNRKEEV 480

Query: 541 SLNPNEGKPSKRGVAGG---HEKQVWVQKSSS 553
            +   EGK S+RG  GG   HEKQ+W+QK SS
Sbjct: 541 VI--GEGKTSRRGSGGGPSSHEKQMWIQKPSS 480

[Close]

BLAST of Cp4.1LG02g10690 vs. TAIR 10
Match: AT1G33980.2 (Smg-4/UPF3 family protein )

HSP 1 Score: 367.5 bits (942), Expect = 2.2e-101
Identity = 252/574 (43.90%), Postives = 320/574 (55.75%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKT--SQKEQRYARAYI 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA RYN   +RPGK+    K Q+Y+RAY+
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60

Query: 61  DFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDY 120
            F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDY
Sbjct: 61  SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120

Query: 121 LEFLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQG-SS 180
           LEFLK+IA+P E+LPSAEIQLER+EAEQSG +K  PIVTPLMEF+RQKRA   G QG S 
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180

Query: 181 VPRKVKRGVAASSRKHESNSMKRGMEKKKACPTFPMFFFPKYILKDSGKNTNRRDKSNFI 240
           + R  +R    S+ K      KR  EKK            KY+ K+S KN  R+  ++ +
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKK------------KYVEKESSKNVPRKTTAD-V 240

Query: 241 LVPRREDQSATSSG-----------IGISDVG---TADSGKKKILLLKGKGRDVSHANLV 300
              + + + + SSG           I  S  G   T DSGKKKILLL+ K RD       
Sbjct: 241 SSSKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRD------- 300

Query: 301 GTNSVLLPHTLTLTLSSSCIMIPLQIADGMLQFQSATSSGNSPANATKQNQRREAGGSMI 360
             N    P              P Q  D  L   S  S         +QNQ+ + GG +I
Sbjct: 301 --NPDNPPPQ------------PEQHIDTNLSRNSTDS---------RQNQKSDVGGRLI 360

Query: 361 RSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEG 420
           + ILL ND+R  QSS+  QS Q+++   ++N KRP R  N+R+G                
Sbjct: 361 KGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTRAG---------------- 420

Query: 421 DGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPR--GRSDASVSQLDESSV 480
                       K++H  G  SEKQE+R RNKDRPDR +WAPR  G  D  +S    +  
Sbjct: 421 ------------KDYHTSGTISEKQERRTRNKDRPDRVMWAPRRDGSEDQPLSSAGNN-- 480

Query: 481 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKD 540
                          GE+KD +   R+G+V  +  G   ++ENGS RH  RR      K+
Sbjct: 481 ---------------GEVKDRMFSQRSGEVVNSSGGH--TLENGSARHSSRRVGGRNRKE 482

Query: 541 DGSLNPNEGKPSKRGVAGG---HEKQVWVQKSSS 553
           +  +   EGK S+RG  GG   HEKQ+W+QK SS
Sbjct: 541 EVVI--GEGKTSRRGSGGGPSSHEKQMWIQKPSS 482

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g10690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVW4	3.2e-102	44.23	Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 P...	[more]
B0S733	5.3e-20	34.13	Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2	[more]
Q9BZI7	9.0e-20	35.02	Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1	[more]
Q9H1J1	1.0e-15	30.69	Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1	[more]
Q10267	2.9e-10	25.74	Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of Cp4.1LG02g10690 vs. NCBI nr


Match Name	Identity	Description
KAG7037154.1	87.54	Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_023523934.1	92.57	regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita pepo subsp. pe...	[more]
XP_022948756.1	92.21	regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita moschata]	[more]
XP_022973412.1	92.03	regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita maxima]	[more]
XP_023523936.1	91.30	regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita pepo subsp. pe...	[more]

BLAST of Cp4.1LG02g10690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA31	0.0	92.21	regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1I7G4	0.0	92.03	regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1GA46	0.0	90.94	regulator of nonsense transcripts UPF3-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1ICZ5	0.0	90.76	regulator of nonsense transcripts UPF3-like isoform X2 OS=Cucurbita maxima OX=36...	[more]
A0A0A0KSY5	1.69e-313	83.88	Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 P...	[more]

BLAST of Cp4.1LG02g10690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33980.1	2.3e-103	44.23	Smg-4/UPF3 family protein	[more]
AT1G33980.2	2.2e-101	43.90	Smg-4/UPF3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..97 e-value: 5.4E-31 score: 108.8
IPR005120	UPF3 domain	PFAM	PF03467	Smg4_UPF3	coord: 6..168 e-value: 5.7E-49 score: 166.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 488..506
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..338
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 405..444
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 478..506
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..400
None	No IPR available	PANTHER	PTHR13112:SF5	REGULATOR OF NONSENSE TRANSCRIPTS UPF3	coord: 1..281 coord: 310..552
None	No IPR available	CDD	cd12455	RRM_like_Smg4_UPF3	coord: 9..94 e-value: 1.40183E-31 score: 115.813
IPR039722	Nonsense-mediated mRNA decay protein 3	PANTHER	PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	coord: 1..281 coord: 310..552
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g10690.1	Cp4.1LG02g10690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0045727	positive regulation of translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding