Cp4.1LG02g10340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g10340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionmyb-related protein 306-like
LocationCp4.1LG02: 9742821 .. 9743153 (-)
RNA-Seq ExpressionCp4.1LG02g10340
SyntenyCp4.1LG02g10340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCATCAAAACCCCAACAATCAACTGCAACTTATGCATCAAGTGCTGAAAATATAGCCAAATTGCTTGAGAATTGGATGAAGAAATCACCAAAATCTTCCACACAAAGTGAAGGATCACAAAGTGGAATGAATTACAACAACTCACCGGAGGTGAATTTGGATGATTCCTTGTTTAATTTCAATGACAATAGCAATTCTCCTTCAACCTCTACAACAAATCAAGTTCCTCCTCTAAGTTTCCTGGAGAAGTGGCTGTTTGATGATGGAGCTTTGGCTCATGTTCATGCTGATCATATAATTAGTGTGTCATTAGAAGCTGAAACATGA

mRNA sequence

ATGGAAGCATCAAAACCCCAACAATCAACTGCAACTTATGCATCAAGTGCTGAAAATATAGCCAAATTGCTTGAGAATTGGATGAAGAAATCACCAAAATCTTCCACACAAAGTGAAGGATCACAAAGTGGAATGAATTACAACAACTCACCGGAGGTGAATTTGGATGATTCCTTGTTTAATTTCAATGACAATAGCAATTCTCCTTCAACCTCTACAACAAATCAAGTTCCTCCTCTAAGTTTCCTGGAGAAGTGGCTGTTTGATGATGGAGCTTTGGCTCATGTTCATGCTGATCATATAATTAGTGTGTCATTAGAAGCTGAAACATGA

Coding sequence (CDS)

ATGGAAGCATCAAAACCCCAACAATCAACTGCAACTTATGCATCAAGTGCTGAAAATATAGCCAAATTGCTTGAGAATTGGATGAAGAAATCACCAAAATCTTCCACACAAAGTGAAGGATCACAAAGTGGAATGAATTACAACAACTCACCGGAGGTGAATTTGGATGATTCCTTGTTTAATTTCAATGACAATAGCAATTCTCCTTCAACCTCTACAACAAATCAAGTTCCTCCTCTAAGTTTCCTGGAGAAGTGGCTGTTTGATGATGGAGCTTTGGCTCATGTTCATGCTGATCATATAATTAGTGTGTCATTAGAAGCTGAAACATGA

Protein sequence

MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLFNFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET
Homology
BLAST of Cp4.1LG02g10340 vs. ExPASy Swiss-Prot
Match: P81392 (Myb-related protein 306 OS=Antirrhinum majus OX=4151 GN=MYB306 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 44/126 (34.92%), Postives = 59/126 (46.83%), Query Frame = 0

Query: 1   MEASKPQQSTATYASSAENIAKLLENWMKKSP---KSSTQSEGSQSGMNYNNSPEVNLDD 60
           ++ ++P+   A+  SSAENIA+LLENW KKSP    S++Q+  S+S     N P V L  
Sbjct: 181 VQTTQPRPFQASTYSSAENIARLLENWKKKSPVNASSTSQAGSSESTTTSFNYPSVCLST 240

Query: 61  S----------LFNFN--------DNSNSPSTSTTNQV-------------PPLSFLEKW 93
           S            +FN        D+  +   + TN V              PLS LEKW
Sbjct: 241 SSPSEGAISTNFISFNSSNSDILEDHDQAKFEAATNGVNFQDESKPILDNQMPLSLLEKW 300

BLAST of Cp4.1LG02g10340 vs. ExPASy Swiss-Prot
Match: Q8GYP5 (Transcription factor MYB60 OS=Arabidopsis thaliana OX=3702 GN=MYB60 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.7e-04
Identity = 38/118 (32.20%), Postives = 51/118 (43.22%), Query Frame = 0

Query: 11  ATYASSAENIAKLLENWMKKSPKSSTQS-------------------------------- 70
           +TYASS ENI++LLE WM+ SPKSST +                                
Sbjct: 145 STYASSTENISRLLEGWMRASPKSSTSTTFLEHKMQNRTNNFIDHHSDQFPYEQLQGSWE 204

Query: 71  EGSQSGMN------YNNSPEVNLDDSLFNFNDNSNSPSTSTTNQVPPLSFLEKWLFDD 91
           EG   G+N        NS   N DD      D+ +    + T   PPL+F+EKWL ++
Sbjct: 205 EGHSKGINGDDDQGIKNSENNNGDDVHHEDGDHEDDDDHNAT---PPLTFIEKWLLEE 259

BLAST of Cp4.1LG02g10340 vs. NCBI nr
Match: XP_023523569.1 (myb-related protein 306-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214 bits (544), Expect = 1.96e-67
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF 60
           MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF
Sbjct: 166 MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF 225

Query: 61  NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 110
           NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET
Sbjct: 226 NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 275

BLAST of Cp4.1LG02g10340 vs. NCBI nr
Match: XP_022948406.1 (myb-related protein 306-like [Cucurbita moschata])

HSP 1 Score: 209 bits (533), Expect = 9.10e-66
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 1   MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF 60
           MEASKPQQSTATYASSAENIAKLLENWMKKSPK STQSEGSQSG NYNNSPEVNLDDSLF
Sbjct: 166 MEASKPQQSTATYASSAENIAKLLENWMKKSPKCSTQSEGSQSGTNYNNSPEVNLDDSLF 225

Query: 61  NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 110
           NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET
Sbjct: 226 NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 275

BLAST of Cp4.1LG02g10340 vs. NCBI nr
Match: KAG6607445.1 (Myb-related protein 306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209 bits (533), Expect = 9.10e-66
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 1   MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF 60
           MEASKPQQSTATYASSAENIAKLLENWMKKSPK STQSEGSQSG NYNNSPEVNLDDSLF
Sbjct: 166 MEASKPQQSTATYASSAENIAKLLENWMKKSPKCSTQSEGSQSGTNYNNSPEVNLDDSLF 225

Query: 61  NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 110
           NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET
Sbjct: 226 NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 275

BLAST of Cp4.1LG02g10340 vs. NCBI nr
Match: XP_022998743.1 (myb-related protein 306-like [Cucurbita maxima])

HSP 1 Score: 208 bits (530), Expect = 2.67e-65
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 1   MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF 60
           ME SKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSG NYNNSPEVNLDDSLF
Sbjct: 166 MEESKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGTNYNNSPEVNLDDSLF 225

Query: 61  NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 110
           NFNDN+NSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET
Sbjct: 226 NFNDNNNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 275

BLAST of Cp4.1LG02g10340 vs. NCBI nr
Match: KAG7037102.1 (Myb-related protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203 bits (517), Expect = 2.42e-63
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 0

Query: 1   MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF 60
           MEASKPQQSTATYASSAENIAKLLENWMKKSPK STQSEGSQSG NYNNSPEVNLDDSLF
Sbjct: 166 MEASKPQQSTATYASSAENIAKLLENWMKKSPKCSTQSEGSQSGTNYNNSPEVNLDDSLF 225

Query: 61  NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 110
           NFN+NSNSPSTSTTNQVP LSFLEKWLFDDGALAHVHADHIISV+LEAET
Sbjct: 226 NFNNNSNSPSTSTTNQVPSLSFLEKWLFDDGALAHVHADHIISVALEAET 275

BLAST of Cp4.1LG02g10340 vs. ExPASy TrEMBL
Match: A0A6J1G947 (myb-related protein 306-like OS=Cucurbita moschata OX=3662 GN=LOC111452096 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 4.41e-66
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 1   MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF 60
           MEASKPQQSTATYASSAENIAKLLENWMKKSPK STQSEGSQSG NYNNSPEVNLDDSLF
Sbjct: 166 MEASKPQQSTATYASSAENIAKLLENWMKKSPKCSTQSEGSQSGTNYNNSPEVNLDDSLF 225

Query: 61  NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 110
           NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET
Sbjct: 226 NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 275

BLAST of Cp4.1LG02g10340 vs. ExPASy TrEMBL
Match: A0A6J1KHM0 (myb-related protein 306-like OS=Cucurbita maxima OX=3661 GN=LOC111493316 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 1.29e-65
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 1   MEASKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSPEVNLDDSLF 60
           ME SKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSG NYNNSPEVNLDDSLF
Sbjct: 166 MEESKPQQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGTNYNNSPEVNLDDSLF 225

Query: 61  NFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 110
           NFNDN+NSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET
Sbjct: 226 NFNDNNNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 275

BLAST of Cp4.1LG02g10340 vs. ExPASy TrEMBL
Match: A0A6J1KGA2 (myb-related protein 306-like OS=Cucurbita maxima OX=3661 GN=LOC111495505 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 3.77e-29
Identity = 72/116 (62.07%), Postives = 84/116 (72.41%), Query Frame = 0

Query: 6   PQQSTATYASSAENIAKLLENWMKKSPKSSTQ-------SEGSQSGMNYNNSPE-VNLDD 65
           P  +T+ YASSAENIA+LLENWMKKSP+ S++       SEGSQS  N NNSP+   LDD
Sbjct: 196 PTTTTSPYASSAENIARLLENWMKKSPEKSSEITTQACVSEGSQSATNCNNSPDGPTLDD 255

Query: 66  S--LFNFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADH-IISVSLEAET 110
           S    NFN   N+ STST NQ  PL+FLEKWLFDD ALA+VHAD   +SVSLEA+T
Sbjct: 256 SSCFLNFN---NTSSTSTANQEVPLTFLEKWLFDDAALANVHADQDFVSVSLEAQT 308

BLAST of Cp4.1LG02g10340 vs. ExPASy TrEMBL
Match: A0A6J1E827 (myb-related protein 306-like OS=Cucurbita moschata OX=3662 GN=LOC111431592 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 1.58e-27
Identity = 70/112 (62.50%), Postives = 81/112 (72.32%), Query Frame = 0

Query: 10  TATYASSAENIAKLLENWMKKSPKSSTQ-------SEGSQSGMNYNNSPE-VNLDDS--L 69
           T+ YASSAENIA+LLENWMKKSP+ S++       SEGSQS  N NNSP+   LDDS   
Sbjct: 200 TSAYASSAENIARLLENWMKKSPEKSSEITTQACVSEGSQSATNGNNSPDGPTLDDSSCF 259

Query: 70  FNFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADH-IISVSLEAET 110
            NFN   N+ STST NQ  PL+FLEKWLFDD ALA+VH D  +ISVSLE +T
Sbjct: 260 LNFN---NTSSTSTANQEVPLTFLEKWLFDDAALANVHTDEDLISVSLEPQT 308

BLAST of Cp4.1LG02g10340 vs. ExPASy TrEMBL
Match: A0A6J1C982 (myb-related protein 306-like OS=Momordica charantia OX=3673 GN=LOC111008619 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.61e-24
Identity = 72/112 (64.29%), Postives = 78/112 (69.64%), Query Frame = 0

Query: 10  TATYASSAENIAKLLENWMKKSPKSS---------TQSEGSQSGMNYNNSPEVNLD--DS 69
           TATYASSAENIA+LLENWMKKSPKSS         T SEGS S  N   SPE NLD   S
Sbjct: 189 TATYASSAENIARLLENWMKKSPKSSQTTTTQLSVTASEGSHSATNTT-SPEPNLDYHSS 248

Query: 70  LFNFNDNSNSPSTSTTNQVPPLSFLEKWLFDDGALAHVHADHIISVSLEAET 110
             +FN N+N  S+ST NQVP L+ LEKWLFDD ALAHV    +ISVSLE ET
Sbjct: 249 FISFN-NTNY-SSSTPNQVP-LTLLEKWLFDDAALAHVPDHDLISVSLEPET 296

BLAST of Cp4.1LG02g10340 vs. TAIR 10
Match: AT1G74650.1 (myb domain protein 31 )

HSP 1 Score: 51.6 bits (122), Expect = 4.7e-07
Identity = 50/139 (35.97%), Postives = 67/139 (48.20%), Query Frame = 0

Query: 2   EASKP-QQSTATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYNNSP-EVNLDD-- 61
           ++ KP   ST TYASS +NI+KLL+NW   +  SS++   S    N ++SP E  L D  
Sbjct: 192 DSPKPHHHSTTTYASSTDNISKLLQNW---TSSSSSKPNTSSVSNNRSSSPGEGGLFDHH 251

Query: 62  SLFNFNDNSNS---------------------------PSTSTTNQVPPLSFLEKWLFDD 108
           SLF+ N  S S                           P+T+TT+    LS +EKWLFDD
Sbjct: 252 SLFSSNSESGSVDEKLNLMSETSMFKGESKPDIDMEATPTTTTTDDQGSLSLIEKWLFDD 311

BLAST of Cp4.1LG02g10340 vs. TAIR 10
Match: AT1G08810.2 (myb domain protein 60 )

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 38/118 (32.20%), Postives = 51/118 (43.22%), Query Frame = 0

Query: 11  ATYASSAENIAKLLENWMKKSPKSSTQS-------------------------------- 70
           +TYASS ENI++LLE WM+ SPKSST +                                
Sbjct: 62  STYASSTENISRLLEGWMRASPKSSTSTTFLEHKMQNRTNNFIDHHSDQFPYEQLQGSWE 121

Query: 71  EGSQSGMN------YNNSPEVNLDDSLFNFNDNSNSPSTSTTNQVPPLSFLEKWLFDD 91
           EG   G+N        NS   N DD      D+ +    + T   PPL+F+EKWL ++
Sbjct: 122 EGHSKGINGDDDQGIKNSENNNGDDVHHEDGDHEDDDDHNAT---PPLTFIEKWLLEE 176

BLAST of Cp4.1LG02g10340 vs. TAIR 10
Match: AT1G08810.1 (myb domain protein 60 )

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 38/118 (32.20%), Postives = 51/118 (43.22%), Query Frame = 0

Query: 11  ATYASSAENIAKLLENWMKKSPKSSTQS-------------------------------- 70
           +TYASS ENI++LLE WM+ SPKSST +                                
Sbjct: 145 STYASSTENISRLLEGWMRASPKSSTSTTFLEHKMQNRTNNFIDHHSDQFPYEQLQGSWE 204

Query: 71  EGSQSGMN------YNNSPEVNLDDSLFNFNDNSNSPSTSTTNQVPPLSFLEKWLFDD 91
           EG   G+N        NS   N DD      D+ +    + T   PPL+F+EKWL ++
Sbjct: 205 EGHSKGINGDDDQGIKNSENNNGDDVHHEDGDHEDDDDHNAT---PPLTFIEKWLLEE 259

BLAST of Cp4.1LG02g10340 vs. TAIR 10
Match: AT3G47600.1 (myb domain protein 94 )

HSP 1 Score: 41.6 bits (96), Expect = 4.8e-04
Identity = 40/117 (34.19%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 10  TATYASSAENIAKLLENWMKKSPKSSTQSEGSQSGMNYN---NSPEV------NLDDSLF 69
           +  YASSAENIA+LL+N+MK +PK+S     + + M      +SP         +D SLF
Sbjct: 217 SGVYASSAENIARLLQNFMKDTPKTSVPLPVAATEMAITTAASSPSTTEGDGEGIDHSLF 276

Query: 70  NFN--DNSNSPSTSTTNQV------PPLSFLEKWLFDDGALAHVHADHIISVSLEAE 110
           +FN  D +        + +        LS  EKWLFD+ +    H   I ++SLE +
Sbjct: 277 SFNSIDEAEEKPKLIDHDINGLITQGSLSLFEKWLFDEQS----HDMIINNMSLEGQ 329

BLAST of Cp4.1LG02g10340 vs. TAIR 10
Match: AT3G28910.1 (myb domain protein 30 )

HSP 1 Score: 40.8 bits (94), Expect = 8.2e-04
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 5   KPQQSTATYASSAENIAKLLENWMKKSPKSSTQSE 40
           + Q+++ TYASS ENIAKLL+ W+K SPK+   ++
Sbjct: 204 RTQETSTTYASSTENIAKLLKGWVKNSPKTQNSAD 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P813921.6e-0434.92Myb-related protein 306 OS=Antirrhinum majus OX=4151 GN=MYB306 PE=2 SV=1[more]
Q8GYP54.7e-0432.20Transcription factor MYB60 OS=Arabidopsis thaliana OX=3702 GN=MYB60 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_023523569.11.96e-67100.00myb-related protein 306-like [Cucurbita pepo subsp. pepo][more]
XP_022948406.19.10e-6698.18myb-related protein 306-like [Cucurbita moschata][more]
KAG6607445.19.10e-6698.18Myb-related protein 306, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022998743.12.67e-6597.27myb-related protein 306-like [Cucurbita maxima][more]
KAG7037102.12.42e-6395.45Myb-related protein [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
A0A6J1G9474.41e-6698.18myb-related protein 306-like OS=Cucurbita moschata OX=3662 GN=LOC111452096 PE=4 ... [more]
A0A6J1KHM01.29e-6597.27myb-related protein 306-like OS=Cucurbita maxima OX=3661 GN=LOC111493316 PE=4 SV... [more]
A0A6J1KGA23.77e-2962.07myb-related protein 306-like OS=Cucurbita maxima OX=3661 GN=LOC111495505 PE=4 SV... [more]
A0A6J1E8271.58e-2762.50myb-related protein 306-like OS=Cucurbita moschata OX=3662 GN=LOC111431592 PE=4 ... [more]
A0A6J1C9821.61e-2464.29myb-related protein 306-like OS=Momordica charantia OX=3673 GN=LOC111008619 PE=4... [more]
Match NameE-valueIdentityDescription
AT1G74650.14.7e-0735.97myb domain protein 31 [more]
AT1G08810.23.3e-0532.20myb domain protein 60 [more]
AT1G08810.13.3e-0532.20myb domain protein 60 [more]
AT3G47600.14.8e-0434.19myb domain protein 94 [more]
AT3G28910.18.2e-0451.43myb domain protein 30 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g10340.1Cp4.1LG02g10340.1mRNA