Cp4.1LG02g10170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g10170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor PRE5-like
Location	Cp4.1LG02: 9793157 .. 9793492 (-)
RNA-Seq Expression	Cp4.1LG02g10170
Synteny	Cp4.1LG02g10170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCAAATTTCGCGACCACCAGATTAAAAATCTTGTCTTGAAATTGCGAACTTTGCTCCCTCAGCTCAACCATAAGTTCGACGACTCCAAGGTATATAAATTTTGTATGTACAAATACTTTCTTATTTTACAGAGTTGTTAATCTATCAATTTATGATGTATGCAGGTACCAATAGCAGAGATTTTGGAGGAGACGTGTGATTGTATAAAAAAATTAGAGAGGGAAATAGACGATCTAAGTGAGAGGCTATGGGAGCAGCTCGAGTCAATGGGAGTTGACTTAGAAATGGTTAAAGATTTCTTCTCACCTAAAATTTCTAGCTCGTAA

mRNA sequence

ATGGCTTCCTCCAAATTTCGCGACCACCAGATTAAAAATCTTGTCTTGAAATTGCGAACTTTGCTCCCTCAGCTCAACCATAAGTTCGACGACTCCAAGGTACCAATAGCAGAGATTTTGGAGGAGACGTGTGATTGTATAAAAAAATTAGAGAGGGAAATAGACGATCTAAGTGAGAGGCTATGGGAGCAGCTCGAGTCAATGGGAGTTGACTTAGAAATGGTTAAAGATTTCTTCTCACCTAAAATTTCTAGCTCGTAA

Coding sequence (CDS)

ATGGCTTCCTCCAAATTTCGCGACCACCAGATTAAAAATCTTGTCTTGAAATTGCGAACTTTGCTCCCTCAGCTCAACCATAAGTTCGACGACTCCAAGGTACCAATAGCAGAGATTTTGGAGGAGACGTGTGATTGTATAAAAAAATTAGAGAGGGAAATAGACGATCTAAGTGAGAGGCTATGGGAGCAGCTCGAGTCAATGGGAGTTGACTTAGAAATGGTTAAAGATTTCTTCTCACCTAAAATTTCTAGCTCGTAA

Protein sequence

MASSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVKDFFSPKISSS

Homology

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.5e-09
Identity = 29/69 (42.03%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 3  SSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLW 62
          +S+  D Q+ +LV KLR  LP+++ +    KV  +++L+ETC+ I+KL RE+D+LS+RL 
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 63 EQLESMGVD 72
          + L+S+  D
Sbjct: 72 QLLDSVDED 80

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy Swiss-Prot
Match: F4JCN9 (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.5e-09
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  SSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLW 62
          +S   D QI +LVL+L  LLP+L +     KV  + +L+ETC  I+ L +E+DDLSERL 
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLS 72

Query: 63 EQLES 68
          + LES
Sbjct: 73 QLLES 77

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy Swiss-Prot
Match: A2Z730 (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 2  ASSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERL 61
          ++++  D QI +LV KL+ LLP+   + +D +VP A +L+ETC  I+ L RE+DDLSERL
Sbjct: 11 SAARITDEQIGDLVSKLQALLPEARLRSND-RVPSARVLQETCSYIRSLHREVDDLSERL 70

Query: 62 WEQLESMGV 71
           E L +  V
Sbjct: 71 AELLAAADV 78

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy Swiss-Prot
Match: Q338G6 (Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 2  ASSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERL 61
          ++++  D QI +LV KL+ LLP+   + +D +VP A +L+ETC  I+ L RE+DDLSERL
Sbjct: 11 SAARITDEQIGDLVSKLQALLPEARLRSND-RVPSARVLQETCSYIRSLHREVDDLSERL 70

Query: 62 WEQLESMGV 71
           E L +  V
Sbjct: 71 AELLAAADV 78

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 3  SSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLW 62
          +S+  + QI +L++KL+ LLP+L       KV  A +L++TC+ I+ L RE+DDLSERL 
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73

Query: 63 EQL 66
          E L
Sbjct: 74 ELL 76

[Close]

BLAST of Cp4.1LG02g10170 vs. NCBI nr
Match: KAG7037094.1 (Transcription factor PRE4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156 bits (394), Expect = 1.30e-47
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSER 60
          MASSKFRD +IKNLVLKL TL PQLNHKFD SKVPIAEIL+ETCDCIKKLEREIDDLSER
Sbjct: 1  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSER 60

Query: 61 LWEQLESMGVDLEMVKDFFSPKISSS 86
          LWEQLE +GVDLEMVKDFFSPKISSS
Sbjct: 61 LWEQLEPLGVDLEMVKDFFSPKISSS 86

[Close]

BLAST of Cp4.1LG02g10170 vs. NCBI nr
Match: KAG6607436.1 (Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142 bits (358), Expect = 3.37e-42
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSER 60
          MASSKFRD +IKNLVLKL TLLPQLNHKFD SKVPIAEIL+ETCDCIKKLEREIDDLSER
Sbjct: 1  MASSKFRDDKIKNLVLKLHTLLPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSER 60

Query: 61 LWEQLESMGVDLEMVK 76
          LWEQLESMGVDLEMVK
Sbjct: 61 LWEQLESMGVDLEMVK 76

[Close]

BLAST of Cp4.1LG02g10170 vs. NCBI nr
Match: XP_011649678.1 (transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa_014368 [Cucumis sativus])

HSP 1 Score: 111 bits (278), Expect = 5.84e-30
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHK-FDDSKVPIAEILEETCDCIKKLEREIDDLSE 60
          MASSK  D ++KNLV KL+TLLPQLNHK  + S+V   EIL+ETCD IKKL+RE+DDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWEQLESMGVDLEMVKDFFS 80
          RLW+QL+SMG+D EMVKD  S
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLS 81

[Close]

BLAST of Cp4.1LG02g10170 vs. NCBI nr
Match: XP_008440200.1 (PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 8.29e-30
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHKFDDS-KVPIAEILEETCDCIKKLEREIDDLSE 60
          MASSK  D+++KNLV KLRTLLPQLNHK D+S +    EIL+ETCD IKKL++E+DDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWEQLESMGVDLEMVKD 77
          RLW+QL+SMGVD EMVKD
Sbjct: 61 RLWKQLDSMGVDFEMVKD 78

[Close]

BLAST of Cp4.1LG02g10170 vs. NCBI nr
Match: KAG7020038.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (263), Expect = 1.04e-27
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSER 60
          MASS   D Q++NL+ +L+TLLPQLNH    S V  AEIL+ETCD IKKL+RE+DDLSER
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSER 60

Query: 61 LWEQLESMGVDLEMVK 76
          LW+QL+SMGVD EMVK
Sbjct: 61 LWKQLDSMGVDFEMVK 76

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy TrEMBL
Match: A0A0A0LQ05 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 2.83e-30
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHK-FDDSKVPIAEILEETCDCIKKLEREIDDLSE 60
          MASSK  D ++KNLV KL+TLLPQLNHK  + S+V   EIL+ETCD IKKL+RE+DDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWEQLESMGVDLEMVKDFFS 80
          RLW+QL+SMG+D EMVKD  S
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLS 81

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy TrEMBL
Match: A0A5A7SZP9 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00610 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 4.01e-30
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHKFDDS-KVPIAEILEETCDCIKKLEREIDDLSE 60
          MASSK  D+++KNLV KLRTLLPQLNHK D+S +    EIL+ETCD IKKL++E+DDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWEQLESMGVDLEMVKD 77
          RLW+QL+SMGVD EMVKD
Sbjct: 61 RLWKQLDSMGVDFEMVKD 78

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy TrEMBL
Match: A0A1S3B0J1 (transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 4.01e-30
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHKFDDS-KVPIAEILEETCDCIKKLEREIDDLSE 60
          MASSK  D+++KNLV KLRTLLPQLNHK D+S +    EIL+ETCD IKKL++E+DDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWEQLESMGVDLEMVKD 77
          RLW+QL+SMGVD EMVKD
Sbjct: 61 RLWKQLDSMGVDFEMVKD 78

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy TrEMBL
Match: A0A5D3BKI2 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00710 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 7.54e-28
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MASSKFRDHQIKNLVLKLRTLLPQLNHKFDDS-KVPIAEILEETCDCIKKLEREIDDLSE 60
          MASSK  D+++KNLV KLRTLLPQLNHK D+S +    EIL+ETCD IKKL++E+DDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWEQLESMGVDLEM 74
          RLW+QL+SMGVD EM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of Cp4.1LG02g10170 vs. ExPASy TrEMBL
Match: A0A498JMP9 (BHLH domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_008849 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.75e-14
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 3  SSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLW 62
          +SK  D +IK LVLKL+ LLPQL+H   ++ V  + ILEETC  IK+L RE++DLS+RL 
Sbjct: 12 ASKSSDDEIKELVLKLQPLLPQLHH-LRNAPVSASSILEETCSYIKRLHREVEDLSKRLS 71

Query: 63 EQLESMG---VDLEMVK 76
          E L+S G   VD E+++
Sbjct: 72 ELLDSAGITDVDEELIR 87

[Close]

BLAST of Cp4.1LG02g10170 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 61.2 bits (147), Expect = 4.6e-10
Identity = 29/69 (42.03%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 3  SSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLW 62
          +S+  D Q+ +LV KLR  LP+++ +    KV  +++L+ETC+ I+KL RE+D+LS+RL 
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 63 EQLESMGVD 72
          + L+S+  D
Sbjct: 72 QLLDSVDED 80

[Close]

BLAST of Cp4.1LG02g10170 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 60.8 bits (146), Expect = 6.0e-10
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  SSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLW 62
          +S   D QI +LVL+L  LLP+L +     KV  + +L+ETC  I+ L +E+DDLSERL 
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLS 72

Query: 63 EQLES 68
          + LES
Sbjct: 73 QLLES 77

[Close]

BLAST of Cp4.1LG02g10170 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-10
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 3  SSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLW 62
          SS+  D QI +LV KL+ L+P+L  +  D KV  +++L+ETC+ I+ L RE+DDLS+RL 
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRRRSD-KVSASKVLQETCNYIRNLHREVDDLSDRLS 73

Query: 63 EQLES 68
          E L S
Sbjct: 74 ELLAS 77

[Close]

BLAST of Cp4.1LG02g10170 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-10
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 3  SSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERLW 62
          +S+  + QI +L++KL+ LLP+L       KV  A +L++TC+ I+ L RE+DDLSERL 
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73

Query: 63 EQL 66
          E L
Sbjct: 74 ELL 76

[Close]

BLAST of Cp4.1LG02g10170 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 28/70 (40.00%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 2  ASSKFRDHQIKNLVLKLRTLLPQLNHKFDDSKVPIAEILEETCDCIKKLEREIDDLSERL 61
          ++ +  D+Q+ +LV KLR +LP++  +    K   +++L+ETC+ I+ L RE+D+LSERL
Sbjct: 11 SAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERL 70

Query: 62 WEQLESMGVD 72
           + LES+  D
Sbjct: 71 SQLLESVDED 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g10170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJX1	6.5e-09	42.03	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
F4JCN9	8.5e-09	47.69	Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1	[more]
A2Z730	1.1e-08	46.38	Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV...	[more]
Q338G6	1.1e-08	46.38	Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 ...	[more]
Q9CA64	1.1e-08	46.03	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]

BLAST of Cp4.1LG02g10170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037094.1	1.30e-47	90.70	Transcription factor PRE4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6607436.1	3.37e-42	93.42	Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_011649678.1	5.84e-30	69.14	transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa...	[more]
XP_008440200.1	8.29e-30	71.79	PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcrip...	[more]
KAG7020038.1	1.04e-27	68.42	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG02g10170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ05	2.83e-30	69.14	DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1	[more]
A0A5A7SZP9	4.01e-30	71.79	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B0J1	4.01e-30	71.79	transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1	[more]
A0A5D3BKI2	7.54e-28	70.67	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A498JMP9	9.75e-14	51.95	BHLH domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_008849 PE=4 S...	[more]

BLAST of Cp4.1LG02g10170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28857.1	4.6e-10	42.03	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	6.0e-10	47.69	BANQUO 3	[more]
AT1G26945.1	7.8e-10	49.23	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G74500.1	7.8e-10	46.03	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT5G39860.1	1.3e-09	40.00	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..67
None	No IPR available	PANTHER	PTHR38546:SF3	DNA BINDING PROTEIN	coord: 3..71
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 8..51 e-value: 1.8E-5 score: 24.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..50 score: 10.143582
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 2..76 e-value: 2.7E-8 score: 35.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 5..64
IPR044172	Transcription factor ILI2-like	PANTHER	PTHR38546	DNA BINDING PROTEIN	coord: 3..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g10170.1	Cp4.1LG02g10170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity