Cp4.1LG02g10070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g10070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionGlycine-rich RNA-binding protein 4
LocationCp4.1LG02: 9898295 .. 9904079 (-)
RNA-Seq ExpressionCp4.1LG02g10070
SyntenyCp4.1LG02g10070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAAATAAACAGCATTTTATAATTCATCCAAAACTAAATTTATAATCAAACTATGCACTGATACGTCGTCGTTACAGGGGTGTAGATCCGCAAAACGTCGTCGTTACAGGGGTCTAGATTCGCAAAAAAAAAAAAAGGGGTACGATCCTCAATCTTCCGGATTACGAATTCCTGAAATTGTTTCACCGTCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACCGCCGGATTGCTATTCTCAGCCGTTCCGACACCGTTCTTTCAGCTTCAGTCCATTGACTATAACAATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTACCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCGATTTCTGACTCGCCGCTCTTTTCTGTGACCTGCGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGTTGATTTTCTTCCTCTCAATTGCGTATTTTTCCCTTCATTTAGGCGTAATTTTGCTATGTATGTAAATGCAATTTGGATTTATCGAATGGTTCCAATTTCATGAGTGTAGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGGTCGTCGACTGCTTCAATTGTGTATTATGAACGTTCCGTTTTGTCAATTAAGTGAAATTGTTGATATTTGGCGCTAACTTTTATCAATTGTTATAAATTTCAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGTACTTCAAATGTTTCCATAATGCATATTATTGTTCTAAGTGTTCGTCGGAAGCAGTACTATACTACCATTCACAATAGTTTTGAAAATTTTATTATCTCATTTGAATTGCACAGTCTTGATGCTCTTTTCTTGTTCACTGTGATTTTGTAATGCATATACGACTCACTGTCTAAAGTATATCCCATTTAGTCTTCTCTAGCCTTAGACAAATCCATCTATAAAGATTCAAAATGACTATAATCTAGGAATTACCACGTTCAATTCCATCAACTGCCATCTTCAGCAAGCCTTTTTGGTACAAATAAATCTTCCTCTACCTTCTGATATAAGATTATAGAATGCACAGCTCTATACATTACAAAAATTGTTACCTTTAATGGCCTCCAATAGACCTTCAAATTCTCTATAAATTTTGGTAGAGAGTATATGTGATGTCCCACATTGGTTGAGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGTGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAAGCCGAAAGAGGACAATATCTACTAGCGGTGGATCTGGGCCATTACAAATGGTATCAGAGCCAGACACCGGATGATGTGCCAGCCTTCTCGCTGTTCCTCGAGGGAGGGGAGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAGATACGAACCGGTGTGCCAGTAAGGACGTTGGGCCCCAAAAGGGGGTGGTCTCACATCGATTGGAGGAAGGAAAGAGTGCTAGCAAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGATTTGGGAGGAGAACAAACTACCATTTATAAGGATGTGAAAACATTCCCTAACAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAATCCCAAAGAGGACAATATCTGCTAGCTGTGGATCTGGGCCATTACAGTATATATCTTGATAGGAGGAGTTGGTTATAATAGATTCAAGGTAGCATTCCTCCAAATATTCCTAATCTTGCTTCCGTTCATTCAGTTATTTCTGGTCTTGCTTCGTGTTCTACCTTCTTCAAATGTCAAAATGAATTGTGTTGCTTGTGCAAGATGGCACAAATGCTTCAGTGGACATGTTTGTAGTTAAGATCTAAGCATTTGTTATACTGATAACTTCAGTTTTATTGTAAGTTTTTCAAGTTTTCAAAATTGTTCTTTATTAATTAAACAAACACTGCAGATTTTGTGAAATATTTTTAATGAATTCAAAGTACTGTTCATATTTAAAAGTCATCTCAAGCTCTTCCTAAGTATACCACAATTATATCTCCCCCAGCTCACTAGTCACTTCCACTGGCGGGCATTCTCCTTGCTCTCTGTCGCAAAGTAAATCATGTAGGAGGCTTAGGAAGCCTATAAAAGACTGCTGAAACCAAATTATCAAGCGCTTCTATAATATTCGGCTGTTCTACACAATTCATTGTTATGAAATTCTTAATATAGATTTGGAAGAGAACTGATTAGAGAAATTTCATGGCTAAACCGTAGTTACTAGCTTTACTTTGTCAGAAGACGATCACTGTTTATTGAACTTGTTATGAAAGGATTTCTTTTTATTGAACTCAAACAACATGAAATTCAATAATTCCATGTTTTTAGCGAACAATTCGTGTATACACGTTTCAGAATTGGCCAAAGTACTGTTAAATATGAGGCACTCTGTGGCAACTATATTTGTAGAAGTTAATAGTCAAAGAACTTATTCTGAGGTTTATTTAATGGATATAACCTCCCCACCTCCTCTCATTGACAAACATGCATTGATATGATATTCTTATCTCTGATTCCATGGATAAAATTCCGATGCCACCTGCTAGAGGAAAAGGCCACTTTTTAAAATCTTGCTTATATAGCTGGAGGGTATGAACTCTGCCATCTGATTATGGTTCTTTCTTTATTTCTCTTTGATATTTGATGATCCTGTTGTCTTAAATTTATTGGTGCATGTTAGTTTCAAGCCTCATAACTTCATGGGCTAATAGGGGCAACTTTGGTTTAGTTTCTGGATGGCAGGGTAATATTTGTGGAAGTTGCAAAGTCCAAATGGGAGCTTCGCCAAGGACTTAAAGAAAACTCTAGCCCATAGAGAACATTGTTTCCCTGGTATTCATTTTTCGAAGTGCTGTACTTTATCTTAGGAAAACATATATAATATATATGGACAGGCTTTGCGTTATTGTTATTGATGTGAGTAGGCTTTATCTTGTCCGTATGATATATAGTCAGTGTGTTTCAGGAGTCATATTATCTCTTGAAATTAATTGATATTAATATTGGAGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGAGATATGGTCAAAGATCACAGGTTGTAAAAGGGGACAAGAATGCTGAAATGATGAATAATATTCAGATGGCCTTAGGGATACCAGAGAGGACTTTTAGGGGTACTAGACATGGACTCGTGGGAATGTGGGACATAATTCGATACAAGGAGAGGCCCACTGTCCCTTCTAAATCTCCTTTTAGAAAAGTCTACCCAAGAACAAGTTAATGATTCCTCTTGGAGATTGAGGATCGTCCCCCCTGTAATCATAGGTACCTGCAAAGTTTTTTCTTCATCCTTAAAGAAAGAGATTTTTTCAGTACTTTGATTGTGTATTATATGCTTGGAAATGCGAACATTTGTGTATGTTATGCATAAAAGTTGAATTTGTCAATTCATTTCTTTAATTCCAATCAACAATAATATACTTTTAAGTTAAATTAAAGATTTTATATACATTAGTTTAAGATTGCTTGCCACTGAATGGATGCTTTGATGGTGGATTCTTTTGCCCCTGAAGTACCTTCATTCTTAACTTTCAGGAAGATCGAATGTTAGACTGCTCGATTTTTTATGCCTTCAAATTAGACTATTTGCACCAGGGAGCTAAATCAAGGTTCTTCAAAGATAGGTTCACTCTCTTCGCTGAAGGATCAAAATTTACAAATATGTTAAGAAGATCTGCTAATATGTTAGGAAGTCATAGAGCAACACCGTTTTGTTTTACAGATTGATTAATTGTCACTCAAATACCCAGGAATAGACAGGATAGAAGTTGTTGGGCAACCCCTTATAGGCTTCGCCCCTCCTGCTACTTCAGATTTTATATGCTACAAGTTTGGCCTCCATTTTTTTCATCTCAAGCTAAAGAGAGAAAAAGAACTCAGAAACCCATGTCAAAGCATCTTGGTCATTTCCTTTTATCGACTTTAAATCTGTTGCTGATCGAGTTCCACTATAATTTTGCAGAGGCTATAAGCAAACTCGAACTCTCCGACCTTCTCTCTCTTCTGAAACAATGAACGAAGAGCTTGCATCTCTCTGAGCCAAGCATCTCTTGTAAGGCACAAACCCCTTCTTACTTTGATTTCTATTACCTCTTCCTACCAGACAAGGGTCTTGACATTCGAATTCCGGGCTCTGGTTTTCATTCTTATCCTTACTCGAGGAGCCAGAACATGAATCCACACACGAACTTTCTACAGAATTGTCATTTTGCATCCTTTCTTCCATACCTCGGTTAGTTTGATCAGGTGGAGCAAGGTAAAAATATGGTACACTTTGATACAAAGACCAACAAGTTTGAGGAGCATTAGCAATCGCCTCAACATAAAGGACACTATTGTCCTGATTCAGTGCGGTGTTGTTAGTAGGTGCTCCACCGGGTGACATATTCCAATCACCATTGTTATCCATCCGAAGAGATAAATTTACATCCATATGTTTTGAAGGTAGCATCTGAACAGGCTTCTCGGCATACACTCCACACTCATTCTTACTCTCACCATCAAGTACCGACGATTTAGTTACTTCAAAATCATGTAAGGATGGTTTTTTGTCATCAGTAACCATTACTGTTCTTCCAAAAAGCTTTATGCTTTTAACAGGAGAATGCAACTTGTTGTCTAATTTCTTAGATGCTGATCCTGGCTTGGATTTCTGAATGTTTAGGAAAGAGAGAAAAAGAAAAAGAGTCAGATCCCAGATGTCAAGTTAAGTGCATAAAGGAAAATGAAGTGGAAGATTAAAAGGACATTTCAAATTACCAGAGTAAGAAAGTCTTCTGGGAACCGCTCGGAGGATGATTCGAGCAATAACATCTCCCCTTTCCTAACAGAGGGCAATCTAGTTGACTGTATGTCAACAGCTTGTGAAATAGGTGATGAACATCTATTATGCTGCACCGAAACCGTAGAAATTTGATCATCCGAACTGAATGCAGTCAATACGGAGGTGGGTGATTGGGTCTCTTTTTCGGCAATTGATAGGTTTGGAGATGGAGACCTCTCAGGTTCTCTTGCAACTGAAATTGCCTTAAGAGAATCGACTGCTTTACGAGGGTAAGGATGCAGTGGTTTCCTTTTTGGTCGAGGTGGAGGAATCTCAATTGGGTTAATGGAGCTGTCATTGCTGCCACTAGGCTCTCGCACTACCTGAAACACAGACAAAATAAAAGTTGAGTGTGGGAATGTTTGGTCATAAAGTGTGTAAGAAAATAGCGTAAAGGGTTTGGTGACGATCTATTTTAGTGAAAAATCCACTATCATCCTAAATTATATTCTGTTTGGTAATGATTCTTAGTTTGGGGGGTTACTAAAACAAAACGCATTTTTTGACCTTAGAGAAAAATTTCTGAGCATGGCTTCGGATCTGAACAGCTGTTTTGG

mRNA sequence

AAAATAAATAAACAGCATTTTATAATTCATCCAAAACTAAATTTATAATCAAACTATGCACTGATACGTCGTCGTTACAGGGGTGTAGATCCGCAAAACGTCGTCGTTACAGGGGTCTAGATTCGCAAAAAAAAAAAAAGGGGTACGATCCTCAATCTTCCGGATTACGAATTCCTGAAATTGTTTCACCGTCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACCGCCGGATTGCTATTCTCAGCCGTTCCGACACCGTTCTTTCAGCTTCAGTCCATTGACTATAACAATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTACCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCGATTTCTGACTCGCCGCTCTTTTCTGTGACCTGCGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGAAGATCGAATGTTAGACTGCTCGATTTTTTATGCCTTCAAATTAGACTATTTGCACCAGGGAGCTAAATCAAGGTTCTTCAAAGATAGGTTCACTCTCTTCGCTGAAGGATCAAAATTTACAAATATGTTAAGAAGATCTGCTAATATGTTAGGAAGTCATAGAGCAACACCGTTTTGTTTTACAGATTGATTAATTGTCACTCAAATACCCAGGAATAGACAGGATAGAAGTTGTTGGGCAACCCCTTATAGGCTTCGCCCCTCCTGCTACTTCAGATTTTATATGCTACAAGTTTGGCCTCCATTTTTTTCATCTCAAGCTAAAGAGAGAAAAAGAACTCAGAAACCCATGTCAAAGCATCTTGGTCATTTCCTTTTATCGACTTTAAATCTGTTGCTGATCGAGTTCCACTATAATTTTGCAGAGGCTATAAGCAAACTCGAACTCTCCGACCTTCTCTCTCTTCTGAAACAATGAACGAAGAGCTTGCATCTCTCTGAGCCAAGCATCTCTTGTAAGGCACAAACCCCTTCTTACTTTGATTTCTATTACCTCTTCCTACCAGACAAGGGTCTTGACATTCGAATTCCGGGCTCTGGTTTTCATTCTTATCCTTACTCGAGGAGCCAGAACATGAATCCACACACGAACTTTCTACAGAATTGTCATTTTGCATCCTTTCTTCCATACCTCGGTTAGTTTGATCAGGTGGAGCAAGGTAAAAATATGGTACACTTTGATACAAAGACCAACAAGTTTGAGGAGCATTAGCAATCGCCTCAACATAAAGGACACTATTGTCCTGATTCAGTGCGGTGTTGTTAGTAGGTGCTCCACCGGGTGACATATTCCAATCACCATTGTTATCCATCCGAAGAGATAAATTTACATCCATATGTTTTGAAGGTAGCATCTGAACAGGCTTCTCGGCATACACTCCACACTCATTCTTACTCTCACCATCAAGTACCGACGATTTAGTTACTTCAAAATCATGAAAGAGAGAAAAAGAAAAAGAGTCAGATCCCAGATGTCAAGTTAAGTGCATAAAGGAAAATGAAGTGGAAGATTAAAAGGACATTTCAAATTACCAGAGTAAGAAAGTCTTCTGGGAACCGCTCGGAGGATGATTCGAGCAATAACATCTCCCCTTTCCTAACAGAGGGCAATCTAGTTGACTGTATGTCAACAGCTTGTGAAATAGGTGATGAACATCTATTATGCTGCACCGAAACCGTAGAAATTTGATCATCCGAACTGAATGCAGTCAATACGGAGGTGGGTGATTGGGTCTCTTTTTCGGCAATTGATAGGTTTGGAGATGGAGACCTCTCAGGTTCTCTTGCAACTGAAATTGCCTTAAGAGAATCGACTGCTTTACGAGGGTAAGGATGCAGTGGTTTCCTTTTTGGTCGAGGTGGAGGAATCTCAATTGGGTTAATGGAGCTGTCATTGCTGCCACTAGGCTCTCGCACTACCTGAAACACAGACAAAATAAAAGTTGAGTGTGGGAATGTTTGGTCATAAAGTGTGTAAGAAAATAGCGTAAAGGGTTTGGTGACGATCTATTTTAGTGAAAAATCCACTATCATCCTAAATTATATTCTGTTTGGTAATGATTCTTAGTTTGGGGGGTTACTAAAACAAAACGCATTTTTTGACCTTAGAGAAAAATTTCTGAGCATGGCTTCGGATCTGAACAGCTGTTTTGG

Coding sequence (CDS)

ATGACCGCCGGATTGCTATTCTCAGCCGTTCCGACACCGTTCTTTCAGCTTCAGTCCATTGACTATAACAATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTACCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCGATTTCTGACTCGCCGCTCTTTTCTGTGACCTGCGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGAAGATCGAATGTTAGACTGCTCGATTTTTTATGCCTTCAAATTAGACTATTTGCACCAGGGAGCTAAATCAAGGTTCTTCAAAGATAGGTTCACTCTCTTCGCTGAAGGATCAAAATTTACAAATATGTTAAGAAGATCTGCTAATATGTTAGGAAGTCATAGAGCAACACCGTTTTGTTTTACAGATTGA

Protein sequence

MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKEDRMLDCSIFYAFKLDYLHQGAKSRFFKDRFTLFAEGSKFTNMLRRSANMLGSHRATPFCFTD
Homology
[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.3e-25
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0 

Query: 52  SVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQL 111
           S ++ R I    + S     SS SP      P T+LYVSGLSFRTTE++LR+ F  FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 112 VEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGK 150
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGK
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.7e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 71  SSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAF 130
           + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 131 LRYATEEESQKAIEGMHGK 150
           +RYAT E+S K I GM GK
Sbjct: 102 VRYATLEDSAKGIAGMDGK 120

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13
Identity = 33/64 (51.56%), Postives = 51/64 (79.69%), Query Frame = 0 

Query: 86  RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 145
           +L+++GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 146 MHGK 150
           M+GK
Sbjct: 343 MNGK 346

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-13
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = 0 

Query: 86  RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 145
           RL+V+GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AF+ Y TEE    A++ 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 146 MHGK 150
           M+G+
Sbjct: 356 MNGQ 359

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-12
Identity = 32/64 (50.00%), Postives = 50/64 (78.12%), Query Frame = 0 

Query: 86  RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 145
           RL+V+GLSF T+E++LR AF  FG+LVEV ++MD+++ R +G+AF+ Y TEE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 146 MHGK 150
           M+G+
Sbjct: 360 MNGQ 363

[Close]
BLAST of Cp4.1LG02g10070 vs. NCBI nr
Match: XP_023525166.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289 bits (740), Expect = 7.25e-97
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60
           MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149
           VANRPRGFAFLRYATEEESQKAIEGMHGK
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149

[Close]
BLAST of Cp4.1LG02g10070 vs. NCBI nr
Match: XP_022998114.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 282 bits (721), Expect = 5.66e-94
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0 

Query: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60
           MTAGLLFSAVP PFFQLQS DYNNIRSTVTRMRIQSIQSKL YSTTPLPFFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149
           VANRPRGFAFLRYATEEESQKAIEGMHGK
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149

[Close]
BLAST of Cp4.1LG02g10070 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 278 bits (710), Expect = 6.97e-92
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60
           MTAGLLFSA P PFFQLQSIDYN+IRSTVTRMRIQSIQSKL YSTTP PFFSVKKTRSIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRSIS 88

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 89  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149
           VANRPRGFAFLRYATEEESQKAIEGMHGK
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGK 177

[Close]
BLAST of Cp4.1LG02g10070 vs. NCBI nr
Match: KAG6607420.1 (Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037088.1 Organelle RRM domain-containing protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277 bits (709), Expect = 9.90e-92
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60
           MTAGLLFSA P PFFQLQSIDYN+IRSTVTRMRIQSIQSKL YSTTPLPFFSVKKTRSIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120
           DSPL SVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149
           VANRPRGFAFLRYATEEESQKAIEGMHGK
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGK 177

[Close]
BLAST of Cp4.1LG02g10070 vs. NCBI nr
Match: XP_038895074.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 239 bits (609), Expect = 4.17e-77
Identity = 125/151 (82.78%), Postives = 133/151 (88.08%), Query Frame = 0 

Query: 1   MTAGLLFS--AVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRS 60
           MTAGL F+  A P PFFQ Q   +NNIRST T  RI SI+S+L YS+TPLPFFSV+KT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 120
           ISDSPLFS+ C SSSPSPSPRRY+PSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 149
           DKVANRPRGFAFLRYATEEESQKAIEGMHGK
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 151

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 282 bits (721), Expect = 2.74e-94
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0 

Query: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60
           MTAGLLFSAVP PFFQLQS DYNNIRSTVTRMRIQSIQSKL YSTTPLPFFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149
           VANRPRGFAFLRYATEEESQKAIEGMHGK
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 278 bits (710), Expect = 3.38e-92
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60
           MTAGLLFSA P PFFQLQSIDYN+IRSTVTRMRIQSIQSKL YSTTP PFFSVKKTRSIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRSIS 88

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 89  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGK 149
           VANRPRGFAFLRYATEEESQKAIEGMHGK
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGK 177

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 236 bits (602), Expect = 5.21e-76
Identity = 125/151 (82.78%), Postives = 134/151 (88.74%), Query Frame = 0 

Query: 1   MTAGLLFS--AVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRS 60
           MTAGL F+  A P PFFQLQ+  +NNIRST T MR QS QSKL YS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 120
           IS+SPLFSV CVSSSPSP  RRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSSPSP--RRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 149
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGK
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy TrEMBL
Match: A0A1S4E0R2 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 3.00e-75
Identity = 124/151 (82.12%), Postives = 133/151 (88.08%), Query Frame = 0 

Query: 1   MTAGLLFS--AVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRS 60
           MTAGL F+  A P PFF LQ+  +NNIRST T MR QS QSKL YS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 120
           IS+SPLFSV CVSSSPSP  RRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSSPSP--RRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 149
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGK
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]
BLAST of Cp4.1LG02g10070 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 3.92e-75
Identity = 124/151 (82.12%), Postives = 133/151 (88.08%), Query Frame = 0 

Query: 1   MTAGLLFS--AVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRS 60
           MTAGL F+  A P PFF LQ+  +NNIRST T MR QS QSKL YS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 120
           IS+SPLFSV CVSSSPSP  RRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSSPSP--RRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 149
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGK
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]
BLAST of Cp4.1LG02g10070 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-26
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0 

Query: 52  SVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQL 111
           S ++ R I    + S     SS SP      P T+LYVSGLSFRTTE++LR+ F  FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 112 VEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGK 150
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGK
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]
BLAST of Cp4.1LG02g10070 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 71  SSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAF 130
           + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 131 LRYATEEESQKAIEGMHGK 150
           +RYAT E+S K I GM GK
Sbjct: 102 VRYATLEDSAKGIAGMDGK 120

[Close]
BLAST of Cp4.1LG02g10070 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-14
Identity = 33/64 (51.56%), Postives = 51/64 (79.69%), Query Frame = 0 

Query: 86  RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 145
           +L+++GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 146 MHGK 150
           M+GK
Sbjct: 343 MNGK 346

[Close]
BLAST of Cp4.1LG02g10070 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-12
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0 

Query: 72  SSPSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFA 131
           SSPS   RR S   S RL+VSGLS  TT E L++AF SFGQLV+  ++ D+ + R +GF 
Sbjct: 19  SSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFG 78

Query: 132 FLRYATEEESQKAIEGMHGK 150
           F+ YAT E+++KA   M+ K
Sbjct: 79  FVTYATIEDAEKAKAEMNAK 98

[Close]
BLAST of Cp4.1LG02g10070 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-12
Identity = 36/88 (40.91%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 64  LFSVTCVSSSPSP-SPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVA 123
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF+  GQ+VE  +VMD+V+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71

Query: 124 NRPRGFAFLRYATEEESQKAIEGMHGKE 151
           +R +GF F+ +A+ +E+QKA+   +G++
Sbjct: 72  DRSKGFGFVTFASADEAQKALMEFNGQQ 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g10070 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FX459.3e-2558.16Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana... [more]
Q9FIU65.7e-1449.37Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana... [more]
Q8L4402.8e-1351.56Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana... [more]
Q6YWP94.8e-1351.56Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ... [more]
C0HFE51.4e-1250.00Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=... [more]
BLAST of Cp4.1LG02g10070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525166.17.25e-97100.00organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo su... [more]
XP_022998114.15.66e-9497.99organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima][more]
XP_022949592.16.97e-9296.64organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata][more]
KAG6607420.19.90e-9296.64Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita arg... [more]
XP_038895074.14.17e-7782.78organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa h... [more]
BLAST of Cp4.1LG02g10070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KDG62.74e-9497.99organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim... [more]
A0A6J1GCJ43.38e-9296.64organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O... [more]
A0A5A7SXY05.21e-7682.78Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A1S4E0R23.00e-7582.12glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis mel... [more]
A0A1S3AYF63.92e-7582.12glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel... [more]
BLAST of Cp4.1LG02g10070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G73530.16.6e-2658.16RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G54580.14.0e-1549.37RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G20930.12.0e-1451.56RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G37510.11.4e-1250.00RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G06210.13.2e-1240.91RNA binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 86..157
e-value: 8.9E-21
score: 85.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 87..150
e-value: 3.3E-16
score: 58.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 85..161
score: 16.755964
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 54..163
e-value: 8.8E-24
score: 86.2
NoneNo IPR availablePANTHERPTHR48029NUCLEOLAR PROTEIN 8coord: 9..150
NoneNo IPR availablePANTHERPTHR48029:SF4ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTICcoord: 9..150
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 70..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g10070.1Cp4.1LG02g10070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1900871 chloroplast mRNA modification
biological_process GO:0016554 cytidine to uridine editing
cellular_component GO:0009507 chloroplast
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding