Cp4.1LG02g09880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g09880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Protein-serine/threonine phosphatase
Location	Cp4.1LG02: 10066754 .. 10071646 (+)
RNA-Seq Expression	Cp4.1LG02g09880
Synteny	Cp4.1LG02g09880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGGCCCAAACAACCCTTCTGAGAGAACTCCTAAAACAATCATCTTTGTCCTTTCTTTATGCCTAAAATGAAGGCTAAGAAGAGTACTCAAATTCCCGACGAAATTCAACTGTGATCAACCGTAATCCTGCTGCTCCCACGCCGGTTTCTCATCGGAGATTCGCCATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCCGGACCTTCTCTCCGAGAACCTAATGTATACGATTTTGGTACACCTTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTGTATCCTTTTTCTCCCCCTCCACGAAGACTGGTGGTACTATTTTCTTGTCTTCAGCATTTTTTTTTAAACTAAATTTCCCAGTTGGACTGTTCTAGATCTCAGTAATGGTTTAACCTTAAAACTTGCATAGATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAATGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGGTTAGTTTGCCTTCTTGAATTTATGCTTGTGAAAGTTAATGGCTCTGCAATGTACGATAGTAGAATTCTTGGCTTCTTTTGCGAGCTCTAACGATGCTTTTTTTCAAGTTTACTTTTAGCAGTTCTGTGCTATATATATAAGATTTATTGTGACTATATTGCCATTGGGACTTGGTTGTGATTGATTGCTGTTGGACCAAGAAGTTATGGGGTGATTATAAGTAGTTTGATGATCAATCCTTAGCATTTATATAAACAGTGATTACATGTTCTATATCAGCTTCAGAGGTTTTCTTTATTTGTGTTTCATAATTATTAATTAGAAGTCATGAATCCTTGATGAAAGACTTTGTGTGAGGAAATTTTACTTGTAGAGAGGAAATGGCCAGTGTAAGATCAGGGTAAACATTAAGTGGGACCGAAGTGGAGTCATCGGTAAGATATCGAGCTTTCATTGAGAAAAATGAAAGAATATACAAGGGCAATAAAAAAAAAAAAAACAAGCCCAATAAAACAAAACAAAAATCCCAAAAAGCTACAAAAAAGGACTCCAATCTAACAAAATCAAGCCAAGACTATAATTATAGAAAGGCTTAGTGACTGATGCCTACAAAGAGGCATTAAACCTAACCACCTTCTAGACCTCATCCACAAGACTGCTCCAACTCTCTCAAAATTTGATTGTTTCTTTCAACCCAAACTCCCCACAAAATAGTAAAGAAACTAGCATGCCACAAAATAGTGCCACTCTCACGAAAAGGTGACCCCATAAGCGCCTTATTGATTGAAGCAAAACAATCATCATTCCACACCCAAATTAAATCAAAGGAGCACCTACCCAAAGGGACTTAACGAACTTCCCACAATAAGTGATGATGGTTCTCAAACTGACATTTACAAGATCACACTGTTGCGGGGACAACTCCGGAAAAGAATATCTCTGTACACAGTCCAAATTTTTACTCGAATAAAAAAATTTCTTCCATTTGTGACTTTGGTTTTTATATTGTACCATTGACCATACATGGTTTGTGGGAATTGGAGATGTGGATTTGAACCTCCGACTACAAAGGATAAAGTAGGTGTTTTTAACTTCTAAGCTATGCTTATGTTGGTTGCAATCATAGATGGTATGGAAGTGTTATTTAGGCACAGGAAGATTTATATTTGTGTCAAATGCATGTGTCACTGTCATGTTGGTTTTCAGGTACATTTAGTAATATAATTCATAATGGCTTGGATAAATAATATTATTTTCCCCTTAGAAATAGGATTTTCTTCCCTGTTGCAAACCACATCTTATAATCCAATATGATTTTTCTCATGTCATTTGATGTTTAGTAAAGACATAATTATGAAGTAGAACGAACGGGATACATCTGAAAACTAGGCAAAAGGCAGCCTAAGAGCTCCAATTTGAGAAAGTTAAAGCAGTATACTTAATTTTATTCCCAAAGGCCCGTTATAATGGTATTCATGCAAAGAATTCAAATATTTGCTAATTTTTTAGGTTGTGCCCAGGTAAGCACTGTTCTATTCCATGGTTTCTTTTACTGATGATAGGAGACTTCAAGAGATGCTGAAATTGTTGATGATGTATTTACTGTGAAGAAAAAGATAACTTGTTTCTTCCCTATGCCCTCTCTACAAAGGATATGCCAGTTTTTTGGAGACAATTTTGATGCCTAATTTGAAATCACTCCTTGCTGTTAAGTTCTTCAATGGAAAGCTGCCAGAAAGTTATTTAAACCTTCTTACGGATATTACTTCTCCAGATGCATTTTCTCATGTGATTACGGATGGCCAATTGACAAATCCTCGATCCGATTTTACTAGCAAATGAGGTTGTGGAAGTTTATAGAGCTAAAAAGAAGCGTGGATGGATTCTGAAATTAGACATTGAAAAAGCTTTTATTTGTGTTGATTTTCACCATTGTCAAGATTAATTTTATACAATTTCTCTGCTTTACAACAAGTCTTATAGATGGATTTCCAGTCCCCTTAGTTGGGCGGGTGGCCTTACTAATTTGGAACCGCTCCTCCTTTGCTAGCGATTACTTCTTTCCATAGGGCAGCTGGCCCTTTCATAAATCTCCATCCCCATTTTGCAAGTAAACTGATGCTCTACCTTTAAGGTTACTCATAACAAGGTCTTCTCTAAATGTAGGGAGTGATGTGGTCTTCCAATTTACAAAAATGCCACCGCTCTCTCTAGAGGCTCCTCTCCAGAAGAAATCATATATAGACGTCTCCAGACTCTGTAAACCCTTCCCAAAGCACTAAAAATTTAGAGGTAATAGATTGGGATGCTAGAAAGAACTGCATTAGCAAGTGTGTGTTCCTACCTCTTGAACATAAAAGATTACCCTAATTTGAGAGCTTAGAAGCTATCTTCTCCTCAACTGGAGTCCAAAACATTTGAAACTTAGGGTTGCTCCAATGACACTCTAAACTCCCAAGTTAGGCAGAAGCCAGTTCCCAACATTGCAACTCCATCTTTCAGCAGCATTCTTTTCTTTGCTTTCATGTAGATTTGTGACCGAAATGGCAATCTTCTGCCAATTGATTTTCAAGCCCTAAAACTAGCTCAAAAATGTCGACAATCTCCTTTGACTTTAACTTATCTTCACTATATTCTAAGAACAAGACACACGTGAATTTGATATCTACCCACCAAGAAGCCATTTATGCTTCCTCTTTCATAAGCCTTCTCCAGCATTCATCACATCAGCTACAATCACAAAGAGGACAGGGCTAAGGGGTCTCTTGCATCAAGCCTCTAGATGCTTAAATAAGGCCTCTTAGCCATCTAAAACAAAGATTGAAAAGAAGGTGTTAGTAAGATAACTTCTATCCATCCCACACACCTTTCTCCAAAGCCTTTGTTTTGAAGGACATCAAGCAAGAAATCCCAATCCACGACTTCCTAAGCTTTTTCAAAGTCAAGCTTGATGACTCAACCTTTCTTCTTCTTGTATTTATACTCACCAACTAGCTCAATCGCCACGAGGATTAAATCAAGGGTCCGTCTTCCAAAATGAACATCAAGTGGATAAGAGAGATGATAAGTTGCAACACATCCTAAGCTTTTTTGACATCAAGCTTGATCACTTAACCTTTCTTCTTCTTGAATTTGTACTCACCAATTAGCTCATTTGCCACAAGGACTAAATCAAGGATCCATCTTCAAAAATGAACATCAAGTAACCATAAGAGATGATAAGAGGCAACACTCCTTGGCCTATTAGAAAGAACTTTAGCCACAACTTTATTAACACTAGTTACAAGGCTAATGGACCTATAATCAGCCACCTTTGACACTCCCGTTCTTTTCAGGATGAGGCATAAGTAGGTTTTATTCATGCACTTGTTTANAAAAAAAAAAAAAAAAAAAAAGAAGATACCCCTATATTATCTGATATTATGTCAAGGAACTATTGTTTAGTCTGGATTGTTGCATCATAAGCTTGCGTTCTTGGCGTTCAATGTGTGCTTATGTTCATGTATACTTCTTATATTACTCATTTATCAAGATGGCCGCTTCTGAAATATTTTTTCTACTCAACCGTCTGATGATAATTATGCAATAATTGAGCAGATCTCAACACACGTGATCATGTACTGATGAAAACTGTACTGATTGTAAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGGTCCAGCTCTCTTGAATTTCTTTTCATTATATTCGTTTGTGTGGATTTGTTATGATTTTTTTTTTCTTTGCTTTTTTATGATAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAACATCAAAGAAGAAAACTGTTGTATAGCATTTCTTTTTACTAAAGACACCATGATCCTACTGGAGTACGGAATATGTGCTGCTGCAACTGTAAGCATATTGGTCATTTTATTTGGTTGCTCTCTTTTGAAGTACTTCTTTTTAAGAAACCAAAACTAAAGTAGGAAAATAGCTTGTTGGCGGAGTCTGCTTACATCAACTCTTTGTGATTCAGTTCATACTCTAATACACTTTTTGGACCCTAATAGTGTCTATTGGTCACTATTGGTCCTTGAAGATTCAAAAGTAGCATTTTAGTCCATGAAATTTATAAAATAGTTCTATAATTGACCACTTGTGGAATTGCTAAGTTGTCAAATTTTAAATGATTTGATAG

mRNA sequence

CAAGGCCCAAACAACCCTTCTGAGAGAACTCCTAAAACAATCATCTTTGTCCTTTCTTTATGCCTAAAATGAAGGCTAAGAAGAGTACTCAAATTCCCGACGAAATTCAACTGTGATCAACCGTAATCCTGCTGCTCCCACGCCGGTTTCTCATCGGAGATTCGCCATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCCGGACCTTCTCTCCGAGAACCTAATGTATACGATTTTGGTACACCTTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAATGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGATCTCAACACACGTGATCATGTACTGATGAAAACTGTACTGATTGTAAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAACATCAAAGAAGAAAACTGTTGTATAGCATTTCTTTTTACTAAAGACACCATGATCCTACTGGAGTACGGAATATGTGCTGCTGCAACTGAAAATAGCTTGTTGGCGGAGTCTGCTTACATCAACTCTTTGTGATTCAGTTCATACTCTAATACACTTTTTGGACCCTAATAGTGTCTATTGGTCACTATTGGTCCTTGAAGATTCAAAAGTAGCATTTTAGTCCATGAAATTTATAAAATAGTTCTATAATTGACCACTTGTGGAATTGCTAAGTTGTCAAATTTTAAATGATTTGATAG

Coding sequence (CDS)

ATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCCGGACCTTCTCTCCGAGAACCTAATGTATACGATTTTGGTACACCTTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAATGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGATCTCAACACACGTGATCATGTACTGATGAAAACTGTACTGATTGTAAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAACATCAAAGAAGAAAACTGTTGTATAGCATTTCTTTTTACTAA

Protein sequence

MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQRRKLLYSISFY

Homology

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy Swiss-Prot
Match: Q9CY97 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus OX=10090 GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.7e-52
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy Swiss-Prot
Match: Q9NP77 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens OX=9606 GN=SSU72 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.8e-52
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy Swiss-Prot
Match: Q4KLK9 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus OX=10116 GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.8e-52
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy Swiss-Prot
Match: Q17QI2 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX=9913 GN=SSU72 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.2e-52
Identity = 100/190 (52.63%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V ++N++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy Swiss-Prot
Match: Q5ZJQ7 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus OX=9031 GN=SSU72 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 8.1e-52
Identity = 100/190 (52.63%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V ++N++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: XP_022948646.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata] >XP_022948647.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata] >XP_023523675.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita pepo subsp. pepo] >XP_023523676.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita pepo subsp. pepo] >KAG7037061.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393 bits (1010), Expect = 4.20e-138
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK
Sbjct: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180

Query: 181 HQRRKLLYSISFY 193
           HQRRKLLYSISFY
Sbjct: 181 HQRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: XP_022997876.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima] >XP_022997877.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima])

HSP 1 Score: 390 bits (1001), Expect = 9.91e-137
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIERAESWEDTIDDIVIAFEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180

Query: 181 HQRRKLLYSISFY 193
           HQRRKLLYSISFY
Sbjct: 181 HQRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: XP_008446784.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 378 bits (971), Expect = 3.72e-132
Identity = 186/193 (96.37%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK 180

Query: 181 HQRRKLLYSISFY 193
             RRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: XP_038895501.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 [Benincasa hispida])

HSP 1 Score: 377 bits (967), Expect = 1.52e-131
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARL FDLCQE+ER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQELERTESWEDSIDDIVITFEK 180

Query: 181 HQRRKLLYSISFY 193
            QRRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: XP_004137380.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus] >KAE8652487.1 hypothetical protein Csa_014181 [Cucumis sativus])

HSP 1 Score: 377 bits (967), Expect = 1.52e-131
Identity = 185/193 (95.85%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH +MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180

Query: 181 HQRRKLLYSISFY 193
             RRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy TrEMBL
Match: A0A6J1G9U0 (Protein-serine/threonine phosphatase OS=Cucurbita moschata OX=3662 GN=LOC111452263 PE=3 SV=1)

HSP 1 Score: 393 bits (1010), Expect = 2.03e-138
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK
Sbjct: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180

Query: 181 HQRRKLLYSISFY 193
           HQRRKLLYSISFY
Sbjct: 181 HQRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy TrEMBL
Match: A0A6J1K8Q5 (Protein-serine/threonine phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111492703 PE=3 SV=1)

HSP 1 Score: 390 bits (1001), Expect = 4.80e-137
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIERAESWEDTIDDIVIAFEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180

Query: 181 HQRRKLLYSISFY 193
           HQRRKLLYSISFY
Sbjct: 181 HQRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy TrEMBL
Match: A0A1S3BFX9 (Protein-serine/threonine phosphatase OS=Cucumis melo OX=3656 GN=LOC103489144 PE=3 SV=1)

HSP 1 Score: 378 bits (971), Expect = 1.80e-132
Identity = 186/193 (96.37%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK 180

Query: 181 HQRRKLLYSISFY 193
             RRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy TrEMBL
Match: A0A6J1C6C8 (Protein-serine/threonine phosphatase OS=Momordica charantia OX=3673 GN=LOC111008820 PE=3 SV=1)

HSP 1 Score: 375 bits (963), Expect = 2.99e-131
Identity = 185/193 (95.85%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNA VKTAPQRWQDNAADG FDVVF+FEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNATVKTAPQRWQDNAADGSFDVVFSFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWE TIDDIVIAFEK
Sbjct: 121 DLNTRDHGLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEGTIDDIVIAFEK 180

Query: 181 HQRRKLLYSISFY 193
             RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. ExPASy TrEMBL
Match: A0A2P5FAG2 (Protein-serine/threonine phosphatase OS=Trema orientale OX=63057 GN=TorRG33x02_092930 PE=3 SV=1)

HSP 1 Score: 357 bits (915), Expect = 1.26e-123
Identity = 170/193 (88.08%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 21  MKYRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 80

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 81  MFDDLRRKDPELYKRNGILPMLKRNSTVKTAPQRWQDNAADGTFDVVFTFEEKVFDMVIE 140

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DL+TR+HVLMK+VL++NLEVKDNHEEAA+GARL  DLCQEIE  E WED+IDD+V AFEK
Sbjct: 141 DLHTREHVLMKSVLVINLEVKDNHEEAAVGARLALDLCQEIEETEMWEDSIDDVVAAFEK 200

Query: 181 HQRRKLLYSISFY 193
             RRKLLYSISFY
Sbjct: 201 QHRRKLLYSISFY 213

[Close]

BLAST of Cp4.1LG02g09880 vs. TAIR 10
Match: AT1G73820.1 (Ssu72-like family protein )

HSP 1 Score: 319.7 bits (818), Expect = 1.6e-87
Identity = 151/193 (78.24%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLN R+  L KT+L++NLEVKDNHEEAAIG RL  +LCQEIE  E+WEDTIDDIV  FEK
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKL+YSISFY
Sbjct: 181 QHRRKLVYSISFY 193

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g09880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CY97	3.7e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]
Q9NP77	4.8e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ...	[more]
Q4KLK9	4.8e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg...	[more]
Q17QI2	6.2e-52	52.63	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX...	[more]
Q5ZJQ7	8.1e-52	52.63	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus...	[more]

BLAST of Cp4.1LG02g09880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948646.1	4.20e-138	100.00	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita mosch...	[more]
XP_022997876.1	9.91e-137	98.96	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxim...	[more]
XP_008446784.1	3.72e-132	96.37	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
XP_038895501.1	1.52e-131	95.34	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 [Beni...	[more]
XP_004137380.1	1.52e-131	95.85	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus...	[more]

BLAST of Cp4.1LG02g09880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9U0	2.03e-138	100.00	Protein-serine/threonine phosphatase OS=Cucurbita moschata OX=3662 GN=LOC1114522...	[more]
A0A6J1K8Q5	4.80e-137	98.96	Protein-serine/threonine phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111492703...	[more]
A0A1S3BFX9	1.80e-132	96.37	Protein-serine/threonine phosphatase OS=Cucumis melo OX=3656 GN=LOC103489144 PE=...	[more]
A0A6J1C6C8	2.99e-131	95.85	Protein-serine/threonine phosphatase OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A2P5FAG2	1.26e-123	88.08	Protein-serine/threonine phosphatase OS=Trema orientale OX=63057 GN=TorRG33x02_0...	[more]

BLAST of Cp4.1LG02g09880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73820.1	1.6e-87	78.24	Ssu72-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 4..193 e-value: 7.5E-80 score: 267.0
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE	coord: 4..193
None	No IPR available	GENE3D	3.40.50.2300		coord: 70..193 e-value: 1.2E-41 score: 143.8 coord: 1..69 e-value: 3.0E-16 score: 61.4
None	No IPR available	PANTHER	PTHR20383:SF9	RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE SSU72	coord: 4..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g09880.1	Cp4.1LG02g09880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006369	termination of RNA polymerase II transcription
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity
molecular_function	GO:0004721	phosphoprotein phosphatase activity