Cp4.1LG02g09430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCTACTGCCGTCCGATTCGGCATCCCTCTTAATCCGTTCATCCAACGGCTGTCATTCATCTGGAACAATATAACCAAATCTTTCCCTTCCCTTTGGCTTCTCCAATAAGCCAAAACAGACGACAGAATTCCTCTATCGACATTGTTGGAGCAGAGAGAGCTTCACATGGCGGCCTCCATTTCAACTTCAGCTAATCCTCTTCTCACCTCAGAGCGCCCGAACCAATTGGCTGCTAATGTAACATCTTTGTCGAGATTGTCTTCCACATCGTCTATACAGCTACCGGTTCAGCTTCGGTGTGTTCGACTCGGAAACCATGGGGTTTCGACTCTGTCGCGGTCTCGAAACTTGCCTGTGGTAGTAATCTCTTTTCTTGGATCTGTATGTCGTCTTAATTGAGGAACCTGTTAGAGAAATTGGAATATGTGGACTTCCCTTTTGTTCTAATTTTTGCTTTTGTTCATAATCTAATATTCAATGACTTCTTGTTAGTTGTACGGTTTCTTGCCCTAATTGCAGATATAAATATTCTGTAGACCGAAACTCATATGATTTAGCTGTTTTCTTTTCCCCTTTTCCTTTAACTTCGGGATTTCCTTTTATTTGAATTTTGATAATCACGGTGTCTGCTGCTTTTTCCACATAACTTGAAACTAGACGGTTCAATTAGGATTTTTTGTAAGAAATAAGTATATTCTATCTGGTTCTATGATTTCTAGGTTTGTTCAAAAATCCAGTTATAAGTACATTTCCAGAAGTACTTTGTTCATTCGGAATGTTTAGTACTTTGTTCATTCACAAATATTACATTAGTGTTTTTTTTATTAATTCTTAAGTAGATTCTTTGAATATGGATGATAATATGAAGTTGTGTTCAAACTACTGTAGTGAATAACGGTGGACTTGTTCGTACAAACTAACTTTTGTAGGTCAAAGCAAGTAATCAAACGTTTTCCTCCTTTGATGATTTACTGGCCAACTCTGGCAAACCGGTGTTAGTCGACTTCTATGCTACCTGGTTAGTCACTTTCTTTATCTTCAATGCACGCACACACATCTATTTTCAAGGCACTCTTCCTTGAAGAGCATTGCAGACGTGACATGATATTTTGTTACAGTTTGCATGATTGTTAATATGTTGAATCGCTTTGTGTTTAATAGATCTTGAATTTTAAAAGTGACTTATATGTTTCGGACCTATGAGTCGTAAAGTTGAAAATTAAGTTTTGGAGATCTGTTAGACACATTTTTCTATGTGTAGGAACCTAACTTATAGCTTAGCCTAAAATTTAAAATTTGTGGACTAATATGGGTGTAGTTGATTTAGTCAATTGCATCAATTAAATGTGCCAATTTGATCTACTTATTTGGACATTTCCTTGTCAAAGGGGTTATGACCTTTACATTTCTTGAGCATTTCTGTTTAGAAATTCAGAATTGTAAATAATTTGCATTACACATTGTTTATGTTTGATTATATACTTAAAAGACATCTCGACAACGTCTAGTTCTGTTTGAACGTGCCTGTTGTGGGATCCTTGGAATGTTTGTCCTTGATTGAGTTGCTACACACCCATTTTCAAAGAACTCCTAGAAAAGCATTGCATACGTGGTATGATATACCATCACACTTTATATGCACAATGTTAATCTGCGGAGACATTTTTAATACACTATTTCAAAACAATCTATTGTTACTGGGAGCAATACCTTGTGAATATGATTCAATGATCAAGTTAGTGCTTGACTACTGAGGAGAAATGGAACAAGCAGGGTTTCAATTGTAGAATCGAAGTATTTTCTTTTATTTAGAAAAAGTAATGTAATTTTATTAAATAATGAGTAAACCTAGCCCCTCATTTGCAGGTGCGGTCCTTGTCAGTTCATGGTTCCTATTCTTGAAAAAGTTAGTGCTAAGCTGAGTGACACAGTCCAGGTGGTCAAGATTGACACTGAGAAATATCCTGTCATCGCTGATAAATACAAAATCGAGGCACTGCCTACGTTCATCCTCTTCAAAGATGGAAAACCCCGTGACCGATTCGTAAGTGAATGCTTTGACTCATTTCTAGTCATTTGGAGTGATATCAAATGTACGACTTATTGTAGCTTTTGCTGTCAAACAATAGATGCGTGAAGACATCTCTCTCATATATGTTTCAGAATCTTTCTTACTAGGCTACAACTATTTTTCGTTTTCTTTAAGTTTTAGTGAGACCTCATAAACAATCTTTAACTTCTTAGACATTCTTGTTGAAATGTCAGGTAGTCGCTCTTTCAGTTTCTTCTGCTTTGATTATTAATTTTTTTATTTTAAACATGCCTGCAAATGATATATATGCAGGAAGGAGCTATGACAGCGGATGACCTCATCAAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAACACTGGTGAGACTCTATACCCTGATTAAAGAATTTGTCTAACCTTGCATTGCATGCTTAGAAGATTTAATACCCATATTGTTGGGAGACAAACTTGGTTTTTTGTAGTTTGGGTCGGACACCTTTTTTTGGGTTTGTTTTTTGTATGTCNGCCGAACTCTTTAAGAGAACGACAAGATATACAATGAGCAATTAAAAAACCAGCTCAAACCAAATAGAGCCAAAGCAAGACAACGACAGAGGCCGAATAAAACTTAAAAAGAATGATCTCCAACTCTTAAGAATGAGAAACAACATATAAATACAGAACTCTGTGAGAGGAAGTACTTAACCTAGCTGTAGACTGAACTTTTCCAATACATTTCTTCCACTATAAAGATCCACTCGTTTCTCCCATGCTAAATGTTCTACAAAATAACTAAAAGGTAGTCTTCGACAACACTTCTTCCTCGTCTTTAAATGGAGGATGGAACAAGGCCTCCTTACGAGGAGCAAGAAAAACAATTATGAACCAAGGAAGCTAATCTCCCAGCATATGATTATGTTCTCCACGGCATACTTACCCAAAATACACTGCTTTGGATTCACATCACGGAGGAAATCTCCTGCATCAAATCAAATGTGCTAATCTCTCCGTGCATGACTTGTTAAGCAAAGAATCTAACCTTCTTTGGGACAAAGAAAACAAAGAGGGGCTTGGATTGGGAGAGATACACAAAAGAGAAAAGAAACATCTAGAGAAAAACCACTTGAAAGGTCAGAGCTCCCCAAAAAATATCCCAGAGTCGGGACAAAACCAAAATCTCACTAGTTATGGAATCAAAGTGGAGATATCAAACAGGGAAGGTGACATCAAAAGCTTCCCTGTCCAAAAGCGGAGGCATAAAATCAAAGTCAAAGGGAACATAATCCCGGGAAGCAAGAAGGATATGGTCTTTAGGAGCAGATTTTTACAAAGAAAAAATGAAGGCAAATCTCTTATTGCCTTTTTATAGCTTTAATCTGTCTAAAAGACATCAAGAAATTTGCACACTTTATCACTCCAATTCTCATTTAGTGTGTTTATAACAATACCTTATCCCAACAACTATTTTGATGAACTTAGAAAGAATGCTTGTTCCCTTGCAAAGAATATTTGGTTGACCTTGAGGCGCTAACAACATTTTTTTTTCATAGCTAAGAATGTTAGCATGATTTAGAGGTGCAAAATTAGGGACCAATTAGATATCAAATTCCAAAATTGGAACCCAAATGTCACTTTTGAAACCTGAAGGATCAAATAGAAATAAAGTTTAAATGTTAATGATAAAAAAAAAATTGTAGTTGCAATAATTCTGTTAAAAGCCTACAAATTTTAGTACATTGGTTGGAGTTTGCGGAACTGATCTAAGCACTGGGTTGAAAAAGTATTGTAAAGGTTAACCTAACCACCTACTATAAATCTAGTAAGTTCTCATATTGTGTATATCCTTAGTTCCTTCGTTTTCAAATCATGTAAGTGTTTAAATGTTGGTTAATAATTTATAATATTAATTGGTTGCACTGCAGAAACACTGGGATGTCAAACGTCCAAGGGAGATATCTTTAACTTCTTACATGAATAGATGAAATGAATTCTATTTTTAGACGATATGAAGCTAGTAATTGTAGGCACTTACCCTATTTGGAGGATGAAGAAAGGGTGATGAGGTCAATTCACTTGAACCAGCCACTAACGATCCAATTGAATTGATTTGGACTATCATATTGTTTTTACTCTCATTTTTTTTACTATTTAAACTTTGAATTTAATT ATCTACTGCCGTCCGATTCGGCATCCCTCTTAATCCGTTCATCCAACGGCTGTCATTCATCTGGAACAATATAACCAAATCTTTCCCTTCCCTTTGGCTTCTCCAATAAGCCAAAACAGACGACAGAATTCCTCTATCGACATTGTTGGAGCAGAGAGAGCTTCACATGGCGGCCTCCATTTCAACTTCAGCTAATCCTCTTCTCACCTCAGAGCGCCCGAACCAATTGGCTGCTAATGTAACATCTTTGTCGAGATTGTCTTCCACATCGTCTATACAGCTACCGGTTCAGCTTCGGTGTGTTCGACTCGGAAACCATGGGGTTTCGACTCTGTCGCGGTCTCGAAACTTGCCTGTGGTCAAAGCAAGTAATCAAACGTTTTCCTCCTTTGATGATTTACTGGCCAACTCTGGCAAACCGGTGTTAGTCGACTTCTATGCTACCTGGTGCGGTCCTTGTCAGTTCATGGTTCCTATTCTTGAAAAAGTTAGTGCTAAGCTGAGTGACACAGTCCAGGTGGTCAAGATTGACACTGAGAAATATCCTGTCATCGCTGATAAATACAAAATCGAGGCACTGCCTACGTTCATCCTCTTCAAAGATGGAAAACCCCGTGACCGATTCGAAGGAGCTATGACAGCGGATGACCTCATCAAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAACACTGAAACACTGGGATGTCAAACGTCCAAGGGAGATATCTTTAACTTCTTACATGAATAGATGAAATGAATTCTATTTTTAGACGATATGAAGCTAGTAATTGTAGGCACTTACCCTATTTGGAGGATGAAGAAAGGGTGATGAGGTCAATTCACTTGAACCAGCCACTAACGATCCAATTGAATTGATTTGGACTATCATATTGTTTTTACTCTCATTTTTTTTACTATTTAAACTTTGAATTTAATT ATGGCGGCCTCCATTTCAACTTCAGCTAATCCTCTTCTCACCTCAGAGCGCCCGAACCAATTGGCTGCTAATGTAACATCTTTGTCGAGATTGTCTTCCACATCGTCTATACAGCTACCGGTTCAGCTTCGGTGTGTTCGACTCGGAAACCATGGGGTTTCGACTCTGTCGCGGTCTCGAAACTTGCCTGTGGTCAAAGCAAGTAATCAAACGTTTTCCTCCTTTGATGATTTACTGGCCAACTCTGGCAAACCGGTGTTAGTCGACTTCTATGCTACCTGGTGCGGTCCTTGTCAGTTCATGGTTCCTATTCTTGAAAAAGTTAGTGCTAAGCTGAGTGACACAGTCCAGGTGGTCAAGATTGACACTGAGAAATATCCTGTCATCGCTGATAAATACAAAATCGAGGCACTGCCTACGTTCATCCTCTTCAAAGATGGAAAACCCCGTGACCGATTCGAAGGAGCTATGACAGCGGATGACCTCATCAAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAA MAASISTSANPLLTSERPNQLAANVTSLSRLSSTSSIQLPVQLRCVRLGNHGVSTLSRSRNLPVVKASNQTFSSFDDLLANSGKPVLVDFYATWCGPCQFMVPILEKVSAKLSDTVQVVKIDTEKYPVIADKYKIEALPTFILFKDGKPRDRFEGAMTADDLIKRIEDSLKVKQ Homology
BLAST of Cp4.1LG02g09430 vs. ExPASy Swiss-Prot
Match: Q6NPF9 (Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76760 PE=1 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 2.3e-45 Identity = 104/172 (60.47%), Postives = 123/172 (71.51%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy Swiss-Prot
Match: Q8L7S9 (Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g43560 PE=2 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43 Identity = 102/176 (57.95%), Postives = 125/176 (71.02%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy Swiss-Prot
Match: Q5JMR9 (Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0963400 PE=3 SV=2) HSP 1 Score: 159.5 bits (402), Expect = 3.5e-38 Identity = 91/169 (53.85%), Postives = 117/169 (69.23%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy Swiss-Prot
Match: P52232 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0233 PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.3e-28 Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy Swiss-Prot
Match: O30974 (Thioredoxin OS=Mycolicibacterium smegmatis OX=1772 GN=trxA PE=1 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 6.9e-18 Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. NCBI nr
Match: XP_023523250.1 (uncharacterized protein LOC111787499 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 335 bits (858), Expect = 1.49e-115 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. NCBI nr
Match: XP_022932509.1 (uncharacterized protein LOC111438908 [Cucurbita moschata] >KAG6607564.1 Thioredoxin Y1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037199.1 Thioredoxin Y1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 328 bits (842), Expect = 4.11e-113 Identity = 172/174 (98.85%), Postives = 172/174 (98.85%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. NCBI nr
Match: XP_022972902.1 (uncharacterized protein LOC111471411 [Cucurbita maxima]) HSP 1 Score: 326 bits (836), Expect = 3.38e-112 Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. NCBI nr
Match: XP_022974037.1 (thioredoxin Y1, chloroplastic-like [Cucurbita maxima] >XP_022974038.1 thioredoxin Y1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 276 bits (705), Expect = 3.13e-92 Identity = 146/174 (83.91%), Postives = 155/174 (89.08%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. NCBI nr
Match: XP_023520827.1 (uncharacterized protein LOC111784322 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520828.1 uncharacterized protein LOC111784322 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520939.1 uncharacterized protein LOC111784479 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 274 bits (701), Expect = 1.27e-91 Identity = 144/174 (82.76%), Postives = 154/174 (88.51%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy TrEMBL
Match: A0A6J1EX66 (uncharacterized protein LOC111438908 OS=Cucurbita moschata OX=3662 GN=LOC111438908 PE=4 SV=1) HSP 1 Score: 328 bits (842), Expect = 1.99e-113 Identity = 172/174 (98.85%), Postives = 172/174 (98.85%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy TrEMBL
Match: A0A6J1I628 (uncharacterized protein LOC111471411 OS=Cucurbita maxima OX=3661 GN=LOC111471411 PE=4 SV=1) HSP 1 Score: 326 bits (836), Expect = 1.63e-112 Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy TrEMBL
Match: A0A6J1I964 (thioredoxin Y1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111472651 PE=4 SV=1) HSP 1 Score: 276 bits (705), Expect = 1.52e-92 Identity = 146/174 (83.91%), Postives = 155/174 (89.08%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy TrEMBL
Match: A0A6J1EXS8 (thioredoxin Y2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439262 PE=4 SV=1) HSP 1 Score: 271 bits (693), Expect = 1.02e-90 Identity = 143/174 (82.18%), Postives = 153/174 (87.93%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. ExPASy TrEMBL
Match: A0A6J1DH52 (thioredoxin Y2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111020017 PE=4 SV=1) HSP 1 Score: 265 bits (676), Expect = 4.10e-88 Identity = 142/175 (81.14%), Postives = 150/175 (85.71%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. TAIR 10
Match: AT1G76760.1 (thioredoxin Y1 ) HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46 Identity = 104/172 (60.47%), Postives = 123/172 (71.51%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. TAIR 10
Match: AT1G43560.1 (thioredoxin Y2 ) HSP 1 Score: 176.8 bits (447), Expect = 1.5e-44 Identity = 102/176 (57.95%), Postives = 125/176 (71.02%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. TAIR 10
Match: AT1G50320.1 (thioredoxin X ) HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16 Identity = 65/180 (36.11%), Postives = 92/180 (51.11%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. TAIR 10
Match: AT3G15360.1 (thioredoxin M-type 4 ) HSP 1 Score: 77.8 bits (190), Expect = 9.6e-15 Identity = 52/171 (30.41%), Postives = 90/171 (52.63%), Query Frame = 0
BLAST of Cp4.1LG02g09430 vs. TAIR 10
Match: AT1G03680.1 (thioredoxin M-type 1 ) HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14 Identity = 32/98 (32.65%), Postives = 61/98 (62.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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