Cp4.1LG02g09370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g09370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor ERF113-like
Location	Cp4.1LG02: 7668868 .. 7669829 (+)
RNA-Seq Expression	Cp4.1LG02g09370
Synteny	Cp4.1LG02g09370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTATTTCAAGGTGGCGAAACAGGGCGCCGGCGGCGATGTGCCGGAGGCGATCTTCTCATCCGCCGGGGAGATAATCACCATGGTCTCGGCTTTGACTCATGTCATTTCCAGTGGCGCTCCCCCCGGGTACGGCGGCGCTGGTGATTTATCTGGGGTTGGTTATTCCTCTGGTTTTGCTCCACCGGCAACCACGGTGGCGGAAGGTGGTGGTTGTAGGAAAAGAGAGAGGGAAGAAGAAGGAGAAAGTGGAATAATGTGGGGAAGGGGGATCGGAAATGGCTATAGCGGTGGCCGGATTGTGGATTTTGGAGCTGTACAGAGTTATTGGGAGCCCTCTGTTTCAATTTGTGAGTTCCAATTCTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTAATTGTATATGATTTCTGTAATTGTTCTTAATTATTCTCATTAATAATATCAGGTGGTGGTTCAAATTCAAGTAACACCATCTCCGCCGCTACGGGGACGAGAACGCCGGCAGCAATTTCCGGCGAAGAAAACCCAAGAAGAAGATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCTGCCGAAATTCGCGACCCTCAGAAGGCCACCAGAGTCTGGCTTGGAACTTTCGACACCGCCGAGGCCGCTGCCCGAGCCTACGACGGTGCAGCCTTGCGATTCCGTGGCAGCAAAGCCAAGCTCAATTTCCCTGAATTCGTCACTGTCCTTCCGCCGTCTTCGCAGCCCAACGCCCATTGGGCCCCATCTCCGGTGGCTGCGNTATATATATATATATATATATATATATAATTGTATCGTAACCAAAATTGTATATCTTAAAATTAAAAAGTTAGTTCAACTCAATTTTAAAAATTTTTATTTAAAATCGAATCTCGTTTCTCGTTTCTTGTTTGTGTTTTTGTAGTTTATAATGATCTATGTCTAAGATTAAGATAA

mRNA sequence

ATGTGCTATTTCAAGGTGGCGAAACAGGGCGCCGGCGGCGATGTGCCGGAGGCGATCTTCTCATCCGCCGGGGAGATAATCACCATGGTCTCGGCTTTGACTCATGTCATTTCCAGTGGCGCTCCCCCCGGGTACGGCGGCGCTGGTGATTTATCTGGGGTTGGTTATTCCTCTGGTTTTGCTCCACCGGCAACCACGGTGGCGGAAGGTGGTGGTTGTAGGAAAAGAGAGAGGGAAGAAGAAGGAGAAAGTGGAATAATGTGGGGAAGGGGGATCGGAAATGGCTATAGCGGTGGCCGGATTGTGGATTTTGGAGCTGTACAGAGTTATTGGGAGCCCTCTGTTTCAATTTTTTATAATGATCTATGTCTAAGATTAAGATAA

Coding sequence (CDS)

ATGTGCTATTTCAAGGTGGCGAAACAGGGCGCCGGCGGCGATGTGCCGGAGGCGATCTTCTCATCCGCCGGGGAGATAATCACCATGGTCTCGGCTTTGACTCATGTCATTTCCAGTGGCGCTCCCCCCGGGTACGGCGGCGCTGGTGATTTATCTGGGGTTGGTTATTCCTCTGGTTTTGCTCCACCGGCAACCACGGTGGCGGAAGGTGGTGGTTGTAGGAAAAGAGAGAGGGAAGAAGAAGGAGAAAGTGGAATAATGTGGGGAAGGGGGATCGGAAATGGCTATAGCGGTGGCCGGATTGTGGATTTTGGAGCTGTACAGAGTTATTGGGAGCCCTCTGTTTCAATTTTTTATAATGATCTATGTCTAAGATTAAGATAA

Protein sequence

MCYFKVAKQGAGGDVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGFAPPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSIFYNDLCLRLR

Homology

[Close]

BLAST of Cp4.1LG02g09370 vs. NCBI nr
Match: XP_023523643.1 (ethylene-responsive transcription factor ABR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238 bits (608), Expect = 1.86e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MCYFKVAKQGAGGDVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF 60
           MCYFKVAKQGAGGDVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF
Sbjct: 1   MCYFKVAKQGAGGDVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF 60

Query: 61  APPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 117
           APPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI
Sbjct: 61  APPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 117

[Close]

BLAST of Cp4.1LG02g09370 vs. NCBI nr
Match: XP_022972888.1 (ethylene-responsive transcription factor ERF113-like [Cucurbita maxima])

HSP 1 Score: 230 bits (586), Expect = 4.48e-73
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MCYFKVAKQGAGGDVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF 60
           MCYFKVAKQG GGD+PEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF
Sbjct: 1   MCYFKVAKQGGGGDMPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF 60

Query: 61  APPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 117
           APPATTVA GGGCRKREREE+GESGIMWG GIGNGYSGGRIVDFGAVQSYWEPSVSI
Sbjct: 61  APPATTVAAGGGCRKREREEDGESGIMWGSGIGNGYSGGRIVDFGAVQSYWEPSVSI 117

[Close]

BLAST of Cp4.1LG02g09370 vs. NCBI nr
Match: KAG6607583.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (583), Expect = 1.32e-72
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MCYFKVAKQGAGG-DVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSG 60
           MCYFKVAKQG GG DVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSG
Sbjct: 1   MCYFKVAKQGGGGGDVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSG 60

Query: 61  FAPPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 117
           FAPPATTVA GGGCRKREREE+GESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI
Sbjct: 61  FAPPATTVAAGGGCRKREREEDGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 118

[Close]

BLAST of Cp4.1LG02g09370 vs. NCBI nr
Match: XP_022932091.1 (ethylene-responsive transcription factor ABR1-like [Cucurbita moschata] >KAG7037206.1 Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226 bits (575), Expect = 2.14e-71
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MCYFKVAKQGAGG-DVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSG 60
           MCYFKVAKQG GG DVPEAIFSSAGEIITMVSALTHVISSGA PGYGGAGDLSGVGYSSG
Sbjct: 1   MCYFKVAKQGGGGGDVPEAIFSSAGEIITMVSALTHVISSGASPGYGGAGDLSGVGYSSG 60

Query: 61  FAPPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 117
           FAPPATTVA GGGCRKREREE+GESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI
Sbjct: 61  FAPPATTVAAGGGCRKREREEDGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 118

[Close]

BLAST of Cp4.1LG02g09370 vs. NCBI nr
Match: XP_008463062.1 (PREDICTED: ethylene-responsive transcription factor ERF110 [Cucumis melo] >KAA0039140.1 ethylene-responsive transcription factor ERF110 [Cucumis melo var. makuwa] >TYK26972.1 ethylene-responsive transcription factor ERF110 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.77e-19
Identity = 63/127 (49.61%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MCYFKVAKQGAG-----GDVPEAIFSS-AGEIITMVSALTHVISSGAPPGYGGAGDLSGV 60
           MCY KVA QG G     GD  E + SS AGE++ MVSALT VIS G+             
Sbjct: 1   MCYLKVANQGGGDGDGDGDELEGMLSSSAGELMAMVSALTRVISGGS------------- 60

Query: 61  GYSSGFAPPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPS 120
                 A PAT     GGCRKR REEEGES IMW RG+G G  GG IVD  A+QS+  PS
Sbjct: 61  ------AAPATV----GGCRKRGREEEGESRIMWERGVGRGNRGG-IVDSTAMQSFSMPS 103

[Close]

BLAST of Cp4.1LG02g09370 vs. ExPASy TrEMBL
Match: A0A6J1IBF3 (ethylene-responsive transcription factor ERF113-like OS=Cucurbita maxima OX=3661 GN=LOC111471399 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 2.17e-73
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MCYFKVAKQGAGGDVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF 60
           MCYFKVAKQG GGD+PEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF
Sbjct: 1   MCYFKVAKQGGGGDMPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSGF 60

Query: 61  APPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 117
           APPATTVA GGGCRKREREE+GESGIMWG GIGNGYSGGRIVDFGAVQSYWEPSVSI
Sbjct: 61  APPATTVAAGGGCRKREREEDGESGIMWGSGIGNGYSGGRIVDFGAVQSYWEPSVSI 117

[Close]

BLAST of Cp4.1LG02g09370 vs. ExPASy TrEMBL
Match: A0A6J1EVE3 (ethylene-responsive transcription factor ABR1-like OS=Cucurbita moschata OX=3662 GN=LOC111438413 PE=4 SV=1)

HSP 1 Score: 226 bits (575), Expect = 1.04e-71
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MCYFKVAKQGAGG-DVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGVGYSSG 60
           MCYFKVAKQG GG DVPEAIFSSAGEIITMVSALTHVISSGA PGYGGAGDLSGVGYSSG
Sbjct: 1   MCYFKVAKQGGGGGDVPEAIFSSAGEIITMVSALTHVISSGASPGYGGAGDLSGVGYSSG 60

Query: 61  FAPPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 117
           FAPPATTVA GGGCRKREREE+GESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI
Sbjct: 61  FAPPATTVAAGGGCRKREREEDGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPSVSI 118

[Close]

BLAST of Cp4.1LG02g09370 vs. ExPASy TrEMBL
Match: A0A5D3DTZ1 (Ethylene-responsive transcription factor ERF110 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00400 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.57e-20
Identity = 63/127 (49.61%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MCYFKVAKQGAG-----GDVPEAIFSS-AGEIITMVSALTHVISSGAPPGYGGAGDLSGV 60
           MCY KVA QG G     GD  E + SS AGE++ MVSALT VIS G+             
Sbjct: 1   MCYLKVANQGGGDGDGDGDELEGMLSSSAGELMAMVSALTRVISGGS------------- 60

Query: 61  GYSSGFAPPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPS 120
                 A PAT     GGCRKR REEEGES IMW RG+G G  GG IVD  A+QS+  PS
Sbjct: 61  ------AAPATV----GGCRKRGREEEGESRIMWERGVGRGNRGG-IVDSTAMQSFSMPS 103

[Close]

BLAST of Cp4.1LG02g09370 vs. ExPASy TrEMBL
Match: A0A1S3CIC7 (ethylene-responsive transcription factor ERF110 OS=Cucumis melo OX=3656 GN=LOC103501300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.57e-20
Identity = 63/127 (49.61%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MCYFKVAKQGAG-----GDVPEAIFSS-AGEIITMVSALTHVISSGAPPGYGGAGDLSGV 60
           MCY KVA QG G     GD  E + SS AGE++ MVSALT VIS G+             
Sbjct: 1   MCYLKVANQGGGDGDGDGDELEGMLSSSAGELMAMVSALTRVISGGS------------- 60

Query: 61  GYSSGFAPPATTVAEGGGCRKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWEPS 120
                 A PAT     GGCRKR REEEGES IMW RG+G G  GG IVD  A+QS+  PS
Sbjct: 61  ------AAPATV----GGCRKRGREEEGESRIMWERGVGRGNRGG-IVDSTAMQSFSMPS 103

[Close]

BLAST of Cp4.1LG02g09370 vs. ExPASy TrEMBL
Match: A0A6J1IBI3 (ethylene-responsive transcription factor ERF112-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472041 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.80e-16
Identity = 61/129 (47.29%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 1   MCYFKVAKQGAGG------DVPEAIFSSAGEIITMVSALTHVISSGAPPGYGGAGDLSGV 60
           MC+ KVA  G GG      D PEA+FSS GE++ MVSALTHVIS       GGA   SGV
Sbjct: 1   MCFLKVANHGGGGGGNGGGDDPEAMFSSEGELMAMVSALTHVIS-------GGAAHASGV 60

Query: 61  GYSS-GFAPPATTVAEGGGC-RKREREEEGESGIMWGRGIGNGYSGGRIVDFGAVQSYWE 120
           GYS    AP  TT     GC RKREREEEG                GRI +F A+QSY  
Sbjct: 61  GYSPCSDAPVTTTTTAVTGCSRKREREEEG----------------GRI-EFRAIQSYST 105

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g09370 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g09370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523643.1	1.86e-77	100.00	ethylene-responsive transcription factor ABR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972888.1	4.48e-73	95.73	ethylene-responsive transcription factor ERF113-like [Cucurbita maxima]	[more]
KAG6607583.1	1.32e-72	96.61	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022932091.1	2.14e-71	95.76	ethylene-responsive transcription factor ABR1-like [Cucurbita moschata] >KAG7037...	[more]
XP_008463062.1	1.77e-19	49.61	PREDICTED: ethylene-responsive transcription factor ERF110 [Cucumis melo] >KAA00...	[more]

BLAST of Cp4.1LG02g09370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBF3	2.17e-73	95.73	ethylene-responsive transcription factor ERF113-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1EVE3	1.04e-71	95.76	ethylene-responsive transcription factor ABR1-like OS=Cucurbita moschata OX=3662...	[more]
A0A5D3DTZ1	8.57e-20	49.61	Ethylene-responsive transcription factor ERF110 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CIC7	8.57e-20	49.61	ethylene-responsive transcription factor ERF110 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1IBI3	6.80e-16	47.29	ethylene-responsive transcription factor ERF112-like isoform X1 OS=Cucurbita max...	[more]

BLAST of Cp4.1LG02g09370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g09370.1	Cp4.1LG02g09370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity