Cp4.1LG02g09360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g09360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein SA
Location	Cp4.1LG02: 7706560 .. 7709459 (+)
RNA-Seq Expression	Cp4.1LG02g09360
Synteny	Cp4.1LG02g09360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTTGTTTTAAACTTCATCATTGAGGGCATTTTTGTAACTTTACGAATCTAGGGTTTTCATTGCTCCATAGAATAAATATTGGCGTTGCTAAACCTCTATCCCTCTTCACTTCGTCAAGTATTGGTAGCGCCGAAGAGCCCTGAACTCTCTCCTTCCTTTCTTCCTTCAGTTCGCTGATTATACGATTCAGCCATGGCGACTGGAGCTGCACCGCCGCGTCAACTCTCACAGAAGGAGGCCGACATTCAGATGATGTTGGCCGCCGAGGTTCATCTTGGAACCAAAAACTGCAATTTCCAAATGGAACGTTACGTTTTCAAGCGCCGTAATGATGGTATGTTTTTCACTCTACTCGCCTTTAGATCTTATTTTGTTAGGTTACTCGAGGTTTTGTTTTTTCTCCATTCTTTTCGGTGTTACTCGAGGTGTTGTTCTTAAGTTTATTTCCCTATAATTTCTCCCAACTTTATGGTGATTACAGTTTCTTACACTTATCTGTGGTTCCCTGGTTAAGCTTGCGTTTGTTTATTTTTAGATTTGAAGTTTCGGTCTCCCTATTTTTCTGTTATATCTTTTTAGATTTTACTGTGTTTTCCGAGGATCTAGCATTGAATATTCTCCAAACTATTCTCCATTTGGTTTTGTATGTTTGGTGTGACTCGCATCTTCTATGCTGTTCCGAAAGTTATAGCTGAATGTTGATTAATATGGTTTCAGAAATGAACTGAAGCCATGCGTGTTCAACTTCCGAACATAGTCTGTTATTCATGGTTTAGAGATCGGAGTTCTTAGTCTGTTGCCTTTAAGCCATATTTGATTTTATCTTATTGCAGGCTGGATGAGGATTATCTCTACGATATGAATATGTTAACTTATATGAATTTTTATACTATTGTTGCTTGTGATTTTTTTTAAAACCCTTTGTTTGCTTTCAGGAATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTCAGCTGGCTGCTAGAGTAATTGTGGGTATCGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGGGCTGTTTTGAAGTTTGCTCAATACACTGGTGCGCATGCAATTGCTGGAAGGCACACTCCCGGAACATTCACCAACCAGCTTCAGACCTCATTCAATGAGCCACGTCTTCTTATACTTACTGACCCTAGAACTGATCATCAGGTGTTTAACCTTAGAAATCAACAATAGTCCATGGTTTAAAATGAAGTCCAAGAAGAATTGATATATATTGTCAATTATGATTCAATTCATGCTTTTTCGCCCTTATATTTATTTGTGCTTGGATTTACTTGATGCTGTTGTTTTTTAATGTTGTCTTGTTGATTTTGACTTGCAGCCCATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCCCCAATGCGTTATGTTGATATTGGAATCCCTGCTAACAACAAGGGGAAACATAGCATAGGATGTTTGTTCTGGCTTTTGGCAAGGATGGTTCTCCAAATGCGTGGAACAATTCGTGCTGGACATAAATGGGATGTGATGGTAAATTCTAAATTCTAATTTCTATTTGGACTGTACAAACCACAATTTGACCAAAAAAATTTAAATTAATTATTGCCATGGGAACTCATTTCCTTGTGTAGGTGGATTTGTTTTTCTATCGTGAGCCTGAGGAGGCTAAGGAGAAGGAAGAGGAAGAGGCTCTTCCGCCCCCAGATTTTGGCATTGCCGACTATGGTGCTGCTCCACTTGTTGCCTCAGATCAATGGTCTGCACAAATTCCTGATGCTCAGTGGGGTGCTGCAGATGTGGTTGTTCCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCATTCCACCTCCTTCCAGTGTCGAGTGGACTTCAGAGCCAGGTTGAATCTTAGCTTTTACTTTAAATTGTTTATTTGAATATCTATCTGCTCTTTGGGGTGGTTATCCCCATGTGAACTAGCTTTCTTCGCTTTGAAGAAGTTTTTTCTCTCATACTAGACAAGTCATTTTATTTGTTTTCCGTTGGAAGGTGTTTATTAGTACCTACATCATACTGCCAATCACCCTGATCTTTGGTACTATACTTTTTTGCATCTAAGACATCATTTGACCAGGAGGTGTTAGATGCATCTTACTAGCAGAAGTGCTTGTAGATTGTTAAAAGTACTTAATCGAGCAATTAATAGTTTGCTCATCGGCTTAAATACTTTTCTTTTCCTACTTGCACCCAATTACATTCACCATCTCACTCTTTTTTCTTTGTTGCAGCTGCTTTGGCAGCAGATGGATGGGACGCTGCAGTAGCACCCCCACTATCAGCACCTGCAGTTGACGGTGCAGCACCTCCCTCCAACGGTGGTTGGTATTGAGAAATAGATGGTTCCGAACCAATTGTACTCCAAATGTTTTAATTACTATGACTTTTTGCCTGTTTAATTAGAAATGTCACCCTTTTTGGTTGGAAAACCGACTCAGTTCTTTTTCTCGTAGTCTGAAGTTTTAGATTTTAAGATTGAAATTTCAACTTCAATACATTATGAATGTCTCCTTACATTTTTTTTTTTTTTTTAAATTTTGGGATATATGAGAAATTACGCCAACCAAGAATATTCGAGTTTTTAAGATACTGTCCTTCCACCGGGAGTTTTGGCTTTAATCCCGATACTGATATTTTACTGACAAATCCAGTAAGTTTAAGTGTAGTGTATTGGTTTTTCATTTCTTTGGAAAGGGAGTGTGCGGAGTGTTTATTTCTTTCGATGTGCATGTTTTTATGATAATTACTTCAGATTATGTTTTAGGACCTTGGAGTAAATTGCCTATTTTATGTCCATGTAAATTAAGCCACCTCTTTGTG

mRNA sequence

CTTTTTTGTTTTAAACTTCATCATTGAGGGCATTTTTGTAACTTTACGAATCTAGGGTTTTCATTGCTCCATAGAATAAATATTGGCGTTGCTAAACCTCTATCCCTCTTCACTTCGTCAAGTATTGGTAGCGCCGAAGAGCCCTGAACTCTCTCCTTCCTTTCTTCCTTCAGTTCGCTGATTATACGATTCAGCCATGGCGACTGGAGCTGCACCGCCGCGTCAACTCTCACAGAAGGAGGCCGACATTCAGATGATGTTGGCCGCCGAGGTTCATCTTGGAACCAAAAACTGCAATTTCCAAATGGAACGTTACGTTTTCAAGCGCCGTAATGATGGAATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTCAGCTGGCTGCTAGAGTAATTGTGGGTATCGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGGGCTGTTTTGAAGTTTGCTCAATACACTGGTGCGCATGCAATTGCTGGAAGGCACACTCCCGGAACATTCACCAACCAGCTTCAGACCTCATTCAATGAGCCACGTCTTCTTATACTTACTGACCCTAGAACTGATCATCAGCCCATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCCCCAATGCGTTATGTTGATATTGGAATCCCTGCTAACAACAAGGGGAAACATAGCATAGGATGTTTGTTCTGGCTTTTGGCAAGGATGGTTCTCCAAATGCGTGGAACAATTCGTGCTGGACATAAATGGGATGTGATGGTGGATTTGTTTTTCTATCGTGAGCCTGAGGAGGCTAAGGAGAAGGAAGAGGAAGAGGCTCTTCCGCCCCCAGATTTTGGCATTGCCGACTATGGTGCTGCTCCACTTGTTGCCTCAGATCAATGGTCTGCACAAATTCCTGATGCTCAGTGGGGTGCTGCAGATGTGGTTGTTCCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCATTCCACCTCCTTCCAGTGTCGAGTGGACTTCAGAGCCAGCTGCTTTGGCAGCAGATGGATGGGACGCTGCAGTAGCACCCCCACTATCAGCACCTGCAGTTGACGGTGCAGCACCTCCCTCCAACGGTGGTTGGTATTGAGAAATAGATGGTTCCGAACCAATTGTACTCCAAATGTTTTAATTACTATGACTTTTTGCCTGTTTAATTAGAAATGTCACCCTTTTTGGTTGGAAAACCGACTCAGTTCTTTTTCTCGTAGTCTGAAGTTTTAGATTTTAAGATTGAAATTTCAACTTCAATACATTATGAATGTCTCCTTACATTTTTTTTTTTTTTTTAAATTTTGGGATATATGAGAAATTACGCCAACCAAGAATATTCGAGTTTTTAAGATACTGTCCTTCCACCGGGAGTTTTGGCTTTAATCCCGATACTGATATTTTACTGACAAATCCAGTAAGTTTAAGTGTAGTGTATTGGTTTTTCATTTCTTTGGAAAGGGAGTGTGCGGAGTGTTTATTTCTTTCGATGTGCATGTTTTTATGATAATTACTTCAGATTATGTTTTAGGACCTTGGAGTAAATTGCCTATTTTATGTCCATGTAAATTAAGCCACCTCTTTGTG

Coding sequence (CDS)

ATGGCGACTGGAGCTGCACCGCCGCGTCAACTCTCACAGAAGGAGGCCGACATTCAGATGATGTTGGCCGCCGAGGTTCATCTTGGAACCAAAAACTGCAATTTCCAAATGGAACGTTACGTTTTCAAGCGCCGTAATGATGGAATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTCAGCTGGCTGCTAGAGTAATTGTGGGTATCGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGGGCTGTTTTGAAGTTTGCTCAATACACTGGTGCGCATGCAATTGCTGGAAGGCACACTCCCGGAACATTCACCAACCAGCTTCAGACCTCATTCAATGAGCCACGTCTTCTTATACTTACTGACCCTAGAACTGATCATCAGCCCATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCCCCAATGCGTTATGTTGATATTGGAATCCCTGCTAACAACAAGGGGAAACATAGCATAGGATGTTTGTTCTGGCTTTTGGCAAGGATGGTTCTCCAAATGCGTGGAACAATTCGTGCTGGACATAAATGGGATGTGATGGTGGATTTGTTTTTCTATCGTGAGCCTGAGGAGGCTAAGGAGAAGGAAGAGGAAGAGGCTCTTCCGCCCCCAGATTTTGGCATTGCCGACTATGGTGCTGCTCCACTTGTTGCCTCAGATCAATGGTCTGCACAAATTCCTGATGCTCAGTGGGGTGCTGCAGATGTGGTTGTTCCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCATTCCACCTCCTTCCAGTGTCGAGTGGACTTCAGAGCCAGCTGCTTTGGCAGCAGATGGATGGGACGCTGCAGTAGCACCCCCACTATCAGCACCTGCAGTTGACGGTGCAGCACCTCCCTCCAACGGTGGTTGGTATTGA

Protein sequence

MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLSAPAVDGAAPPSNGGWY

Homology

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy Swiss-Prot
Match: A5BUU4 (40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 1.0e-128
Identity = 243/319 (76.18%), Postives = 258/319 (80.88%), Query Frame = 0


Query: 5   AAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 64
           A P R LSQKE DIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA
Sbjct: 2   ATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 61

Query: 65  ARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV IENP+DIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 62  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 121

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 122 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 181

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPL--VASDQ 244
           VLQMR TI  GHKWDVMVDLFFYREPEE KE+E +E +  PD+GI DY A  L  +    
Sbjct: 182 VLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGD 241

Query: 245 WSAQIPDA-QWGA---ADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPP 304
           W A I DA QWGA   A   +PA   +    A P PS+V        +A DGWDAA APP
Sbjct: 242 WGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAV-------PIATDGWDAAAAPP 301

Query: 305 LSA--PAVDGAAPPSNGGW 316
           ++   P V+G  PP+  GW
Sbjct: 302 VAVPPPVVEGVPPPA--GW 311

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy Swiss-Prot
Match: O80377 (40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 2.3e-128
Identity = 243/315 (77.14%), Postives = 261/315 (82.86%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MA+GA   R+LS  EADIQMM AAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MASGA---RELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           L LAARVIV IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LMLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRG I  GHKW+VMVDLFFYREPEE K++EEE+ LP  D+ +ADY AAP+  +
Sbjct: 181 LARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEED-LPVGDY-VADYAAAPIGGA 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQW+A IPDAQWG  DVV PA +A  A           WT +   +A DGWDAA APP+ 
Sbjct: 241 DQWNA-IPDAQWG-GDVVQPANSAVPAGT---------WT-DAGPIAGDGWDAAAAPPV- 296

Query: 301 APAVDGAAPPSNGGW 316
            P   G   P+  GW
Sbjct: 301 -PGAVGLDVPAPTGW 296

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy Swiss-Prot
Match: O22518 (40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 9.0e-125
Identity = 236/309 (76.38%), Postives = 247/309 (79.94%), Query Frame = 0


Query: 5   AAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 64
           AAPPRQLSQKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTWEKLQLA
Sbjct: 9   AAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLA 68

Query: 65  ARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 69  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 128

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 129 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 188

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQWS 244
           VLQMRGTIR G KWDVMVDLFFYREPEEAK++EEEEA P  D+ I D+ A  + A  QW 
Sbjct: 189 VLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEA-PAVDYAITDFNAGAIAADGQWP 248

Query: 245 AQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADG--WDAAVAPPLSAP 304
             I D  W           + A    IP    V W +   A AA G  W  AV PP   P
Sbjct: 249 GTI-DQSW-----------SDAVPQPIPAVPGVNWGAPAEAPAAAGGDWGEAVPPPQQIP 299

Query: 305 AVDGAAPPS 312
                 PPS
Sbjct: 309 -----VPPS 299

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy Swiss-Prot
Match: Q08682 (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3)

HSP 1 Score: 442.2 bits (1136), Expect = 5.0e-123
Identity = 230/305 (75.41%), Postives = 251/305 (82.30%), Query Frame = 0


Query: 1   MAT-GAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A   QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
           KLQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQYTGA+AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEE K ++E+EA P  ++G        +V 
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-SAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPP 300
            DQW +AQIPDA W       P    A  +AA   P++  W+   AA A  GW+AA APP
Sbjct: 241 GDQWTTAQIPDAAW-------PGEGQAPISAA---PAAASWSDSAAAPADGGWEAA-APP 294

Query: 301 LSAPA 304
             APA
Sbjct: 301 SGAPA 294

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy Swiss-Prot
Match: O65751 (40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.4e-122
Identity = 231/313 (73.80%), Postives = 250/313 (79.87%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQL+QKEADIQMMLAA+VHLGTKNCNFQMERY+FKRRNDGIYIINLGKTW+K
Sbjct: 1   MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           L LAAR+IV IEN QDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIR G KWDVMVDLFFYREPEEAK+ EE+E +  PD+ IAD+  + + + 
Sbjct: 181 LARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDE-VAAPDYAIADFNVSAIPSD 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
            QW A I D  W  A   VP          IP   +V W + P A+A D W  AV PP  
Sbjct: 241 GQWPAAI-DQPWNDA---VP--------QPIPAVPAVNWAA-PEAVAGD-WGEAVPPPQQ 298

Query: 301 APAVDGAAPPSNG 314
            P     + P+ G
Sbjct: 301 IPTAGIESVPATG 298

[Close]

BLAST of Cp4.1LG02g09360 vs. NCBI nr
Match: XP_023525392.1 (40S ribosomal protein SA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 632 bits (1630), Expect = 1.67e-228
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300

Query: 301 APAVDGAAPPSNGGWY 316
           APAVDGAAPPSNGGWY
Sbjct: 301 APAVDGAAPPSNGGWY 316

[Close]

BLAST of Cp4.1LG02g09360 vs. NCBI nr
Match: KAG6607580.1 (40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 624 bits (1610), Expect = 1.67e-225
Identity = 313/316 (99.05%), Postives = 313/316 (99.05%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQWSAQIPDAQWGAADVVVPAAAAAAA   IPPPSSVEWTSEPAALAADGWDAAVAPPLS
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAAAAAAA---IPPPSSVEWTSEPAALAADGWDAAVAPPLS 300

Query: 301 APAVDGAAPPSNGGWY 316
           APAVDGAAPPSNGGWY
Sbjct: 301 APAVDGAAPPSNGGWY 313

[Close]

BLAST of Cp4.1LG02g09360 vs. NCBI nr
Match: XP_022932088.1 (40S ribosomal protein SA-like [Cucurbita moschata] >KAG7037204.1 40S ribosomal protein SA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 623 bits (1606), Expect = 6.56e-225
Identity = 312/316 (98.73%), Postives = 312/316 (98.73%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQWSAQIPDAQWGAADVVVPAAAAAA    IPPPSSVEWTSEPAALAADGWDAAVAPPLS
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAAAAAA----IPPPSSVEWTSEPAALAADGWDAAVAPPLS 300

Query: 301 APAVDGAAPPSNGGWY 316
           APAVDGAAPPSNGGWY
Sbjct: 301 APAVDGAAPPSNGGWY 312

[Close]

BLAST of Cp4.1LG02g09360 vs. NCBI nr
Match: XP_022972886.1 (40S ribosomal protein SA-like [Cucurbita maxima])

HSP 1 Score: 615 bits (1587), Expect = 5.36e-222
Identity = 310/317 (97.79%), Postives = 311/317 (98.11%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQWSAQIPDAQWGAADVVVPAA AAA    IPPPSSVEWTSEPAALAADGWDAAV+PPLS
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAATAAA----IPPPSSVEWTSEPAALAADGWDAAVSPPLS 300

Query: 301 APAVDGAAPPS-NGGWY 316
           APAVDGAAPPS NGGWY
Sbjct: 301 APAVDGAAPPSANGGWY 313

[Close]

BLAST of Cp4.1LG02g09360 vs. NCBI nr
Match: XP_038886558.1 (40S ribosomal protein SA-like [Benincasa hispida])

HSP 1 Score: 554 bits (1427), Expect = 1.16e-197
Identity = 282/321 (87.85%), Postives = 292/321 (90.97%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQL+QKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLAQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEEEALPPPDFGIADYGAAPLV +
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGA 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQW+AQIPDAQWGA D V PAAA       +PP S+VEW  EP ALAADGWDAAV PP+ 
Sbjct: 241 DQWTAQIPDAQWGAGDAV-PAAA-------VPPASNVEWAQEPVALAADGWDAAV-PPV- 300

Query: 301 APAVDGAA-----PPSNGGWY 316
            PA DGA      PPS+  W+
Sbjct: 301 -PAADGAVAAAPPPPSSASWF 310

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy TrEMBL
Match: A0A6J1F0N2 (40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111438410 PE=3 SV=1)

HSP 1 Score: 623 bits (1606), Expect = 3.17e-225
Identity = 312/316 (98.73%), Postives = 312/316 (98.73%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQWSAQIPDAQWGAADVVVPAAAAAA    IPPPSSVEWTSEPAALAADGWDAAVAPPLS
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAAAAAA----IPPPSSVEWTSEPAALAADGWDAAVAPPLS 300

Query: 301 APAVDGAAPPSNGGWY 316
           APAVDGAAPPSNGGWY
Sbjct: 301 APAVDGAAPPSNGGWY 312

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy TrEMBL
Match: A0A6J1I769 (40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111471398 PE=3 SV=1)

HSP 1 Score: 615 bits (1587), Expect = 2.60e-222
Identity = 310/317 (97.79%), Postives = 311/317 (98.11%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQWSAQIPDAQWGAADVVVPAA AAA    IPPPSSVEWTSEPAALAADGWDAAV+PPLS
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAATAAA----IPPPSSVEWTSEPAALAADGWDAAVSPPLS 300

Query: 301 APAVDGAAPPS-NGGWY 316
           APAVDGAAPPS NGGWY
Sbjct: 301 APAVDGAAPPSANGGWY 313

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy TrEMBL
Match: A0A6J1I7P9 (40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111472042 PE=3 SV=1)

HSP 1 Score: 550 bits (1418), Expect = 1.23e-196
Identity = 284/317 (89.59%), Postives = 290/317 (91.48%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQW+AQI DAQWGAADVV PA AA AA       SSVEW  EP  LAA+ W+AAVAPP  
Sbjct: 241 DQWAAQISDAQWGAADVV-PAPAAPAA-------SSVEWAPEPVPLAANEWEAAVAPPPP 300

Query: 301 AP-AVDGAAPPSNGGWY 316
           AP A DGAAP S+  W+
Sbjct: 301 APPAADGAAP-SSASWF 308

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy TrEMBL
Match: A0A6J1EC15 (40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111432696 PE=3 SV=1)

HSP 1 Score: 550 bits (1418), Expect = 1.23e-196
Identity = 284/317 (89.59%), Postives = 290/317 (91.48%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300
           DQW+AQI DAQWGAADVV PA AA AA       SSVEW  EP  LAA+ W+AAVAPP  
Sbjct: 241 DQWAAQISDAQWGAADVV-PAPAAPAA-------SSVEWAPEPVPLAANEWEAAVAPPPP 300

Query: 301 AP-AVDGAAPPSNGGWY 316
           AP A DGAAP S+  W+
Sbjct: 301 APPAADGAAP-SSASWF 308

[Close]

BLAST of Cp4.1LG02g09360 vs. ExPASy TrEMBL
Match: A0A6J1DWT5 (40S ribosomal protein SA OS=Momordica charantia OX=3673 GN=LOC111025257 PE=3 SV=1)

HSP 1 Score: 548 bits (1411), Expect = 1.38e-195
Identity = 281/317 (88.64%), Postives = 289/317 (91.17%), Query Frame = 0


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKN +FQMERY+FKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNSDFQMERYIFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIV IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE+EEEEA  PPD+GIAD+GAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEQEEEEAAAPPDYGIADFGAAPLVAS 240

Query: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAAL-AADGWDAAVAPPL 300
           DQW+ QIPDAQWGA DVVVPAAAA        P SSVEW  EPAA  AADGWDA V PP 
Sbjct: 241 DQWAGQIPDAQWGAPDVVVPAAAA--------PVSSVEWAQEPAASGAADGWDAPVVPP- 300

Query: 301 SAPAVDGAAPPSNGGWY 316
            APAVD AAPP+   W+
Sbjct: 301 PAPAVDSAAPPAAS-WF 307

[Close]

BLAST of Cp4.1LG02g09360 vs. TAIR 10
Match: AT1G72370.1 (40s ribosomal protein SA )

HSP 1 Score: 442.2 bits (1136), Expect = 3.5e-124
Identity = 230/305 (75.41%), Postives = 251/305 (82.30%), Query Frame = 0


Query: 1   MAT-GAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A   QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
           KLQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQYTGA+AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEE K ++E+EA P  ++G        +V 
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-SAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPP 300
            DQW +AQIPDA W       P    A  +AA   P++  W+   AA A  GW+AA APP
Sbjct: 241 GDQWTTAQIPDAAW-------PGEGQAPISAA---PAAASWSDSAAAPADGGWEAA-APP 294

Query: 301 LSAPA 304
             APA
Sbjct: 301 SGAPA 294

[Close]

BLAST of Cp4.1LG02g09360 vs. TAIR 10
Match: AT1G72370.2 (40s ribosomal protein SA )

HSP 1 Score: 436.0 bits (1120), Expect = 2.5e-122
Identity = 228/305 (74.75%), Postives = 249/305 (81.64%), Query Frame = 0


Query: 1   MAT-GAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A   QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
           KLQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQYTGA+AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEE K ++E+EA P  ++G        +V 
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-SAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPP 300
            DQW +AQIPDA W       P    A  +AA   P++  W+      A  GW+AA APP
Sbjct: 241 GDQWTTAQIPDAAW-------PGEGQAPISAA---PAAASWSDS----ADGGWEAA-APP 290

Query: 301 LSAPA 304
             APA
Sbjct: 301 SGAPA 290

[Close]

BLAST of Cp4.1LG02g09360 vs. TAIR 10
Match: AT3G04770.2 (40s ribosomal protein SA B )

HSP 1 Score: 416.0 bits (1068), Expect = 2.7e-116
Identity = 214/289 (74.05%), Postives = 241/289 (83.39%), Query Frame = 0


Query: 5   AAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 64
           A   RQ+S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+KLQ+A
Sbjct: 7   ATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMA 66

Query: 65  ARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV IENP+DIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSF+EPRL
Sbjct: 67  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRL 126

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 127 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARM 186

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQW- 244
           VLQMRGTI A  KWDVMVDLFFYREPEEAK++ +EEA    D+G        +V  DQW 
Sbjct: 187 VLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAEVQADYG--------MVGGDQWT 246

Query: 245 SAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWD 293
           +AQI DA W + +V  P +AA A    +    +  W  E A++ A GW+
Sbjct: 247 TAQISDAAW-SGEVEQPISAAPAVGVTV----AAGW--EAASVPAAGWE 280

[Close]

BLAST of Cp4.1LG02g09360 vs. TAIR 10
Match: AT3G04770.1 (40s ribosomal protein SA B )

HSP 1 Score: 371.7 bits (953), Expect = 5.8e-103
Identity = 176/199 (88.44%), Postives = 190/199 (95.48%), Query Frame = 0


Query: 5   AAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 64
           A   RQ+S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+KLQ+A
Sbjct: 7   ATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMA 66

Query: 65  ARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV IENP+DIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSF+EPRL
Sbjct: 67  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRL 126

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 127 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARM 186

Query: 185 VLQMRGTIRAGHKWDVMVD 204
           VLQMRGTI A  KWDVMV+
Sbjct: 187 VLQMRGTILAAQKWDVMVN 205

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g09360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5BUU4	1.0e-128	76.18	40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV...	[more]
O80377	2.3e-128	77.14	40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1	[more]
O22518	9.0e-125	76.38	40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q08682	5.0e-123	75.41	40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3	[more]
O65751	1.4e-122	73.80	40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1	[more]

BLAST of Cp4.1LG02g09360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525392.1	1.67e-228	100.00	40S ribosomal protein SA-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607580.1	1.67e-225	99.05	40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022932088.1	6.56e-225	98.73	40S ribosomal protein SA-like [Cucurbita moschata] >KAG7037204.1 40S ribosomal p...	[more]
XP_022972886.1	5.36e-222	97.79	40S ribosomal protein SA-like [Cucurbita maxima]	[more]
XP_038886558.1	1.16e-197	87.85	40S ribosomal protein SA-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG02g09360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0N2	3.17e-225	98.73	40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111438410 PE=3 SV=1	[more]
A0A6J1I769	2.60e-222	97.79	40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111471398 PE=3 SV=1	[more]
A0A6J1I7P9	1.23e-196	89.59	40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111472042 PE=3 SV=1	[more]
A0A6J1EC15	1.23e-196	89.59	40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111432696 PE=3 SV=1	[more]
A0A6J1DWT5	1.38e-195	88.64	40S ribosomal protein SA OS=Momordica charantia OX=3673 GN=LOC111025257 PE=3 SV=...	[more]

BLAST of Cp4.1LG02g09360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72370.1	3.5e-124	75.41	40s ribosomal protein SA	[more]
AT1G72370.2	2.5e-122	74.75	40s ribosomal protein SA	[more]
AT3G04770.2	2.7e-116	74.05	40s ribosomal protein SA B	[more]
AT3G04770.1	5.8e-103	88.44	40s ribosomal protein SA B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 48..57 score: 64.92 coord: 139..150 score: 46.03 coord: 122..139 score: 44.62 coord: 97..114 score: 47.01 coord: 18..36 score: 35.79 coord: 160..174 score: 53.64
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 120..185 e-value: 6.3E-11 score: 41.9 coord: 21..114 e-value: 1.2E-13 score: 50.8
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 21..187 e-value: 2.05964E-72 score: 220.146
None	No IPR available	GENE3D	3.40.50.10490		coord: 17..222 e-value: 1.5E-103 score: 346.5
None	No IPR available	PANTHER	PTHR11489:SF25	40S RIBOSOMAL PROTEIN SA	coord: 10..277
IPR032281	40S ribosomal protein SA, C-terminal domain	PFAM	PF16122	40S_SA_C	coord: 205..297 e-value: 6.8E-6 score: 27.3
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	TIGRFAM	TIGR01012	TIGR01012	coord: 13..209 e-value: 5.6E-96 score: 317.6
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 10..277
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 18..29
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 122..146
IPR027498	Ribosomal protein S2, eukaryotic	HAMAP	MF_03015	Ribosomal_S2_euk	coord: 5..282 score: 50.598137
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 13..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g09360.1	Cp4.1LG02g09360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome