Cp4.1LG02g09340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g09340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cucumber peeling cupredoxin-like
Location	Cp4.1LG02: 7612993 .. 7613449 (+)
RNA-Seq Expression	Cp4.1LG02g09340
Synteny	Cp4.1LG02g09340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCCTCAATCACTTCCCTTGCTTCCTTCTTCTTCCTTGGAGCCCTCCTCCACCACGCGGTTGCCATCGGCCACATTGTCGGAGGCGATCATGGGTGGAACCTCCCACCAACCCCCACCTTCTTCTCCGAATGGGCTCGCAATTCAACCTTCTACATCAATGATAGACTCAGTAATTATTCACTTCATTCATTCTTTCTTTCATTTCTGCTACTCGTAACTTGAATGCATGTGTTGTTGGGCAGTAATCAAATCAAGAGGCAACGAAGTTCACGACGTTGCAAGCCCAAAATCTCAAGCAGATTTTGACGGATGTGTCCTCCCACCATTTGTTTATGATTTTGTTGGTTTCATTTCGCTACCGCGTGTTGGCCGCTTTTATTTTATCTCCGCTATGGGAAATGATTGCAATGCAGGAATGAAATTTGGTATCGACGTTCTACCAAAATTGTGA

mRNA sequence

ATGAGTGCCTCAATCACTTCCCTTGCTTCCTTCTTCTTCCTTGGAGCCCTCCTCCACCACGCGGTTGCCATCGGCCACATTGTCGGAGGCGATCATGGGTGGAACCTCCCACCAACCCCCACCTTCTTCTCCGAATGGGCTCGCAATTCAACCTTCTACATCAATGATAGACTCATAATCAAATCAAGAGGCAACGAAGTTCACGACGTTGCAAGCCCAAAATCTCAAGCAGATTTTGACGGATGTGTCCTCCCACCATTTGTTTATGATTTTGTTGGTTTCATTTCGCTACCGCGTGTTGGCCGCTTTTATTTTATCTCCGCTATGGGAAATGATTGCAATGCAGGAATGAAATTTGGTATCGACGTTCTACCAAAATTGTGA

Coding sequence (CDS)

ATGAGTGCCTCAATCACTTCCCTTGCTTCCTTCTTCTTCCTTGGAGCCCTCCTCCACCACGCGGTTGCCATCGGCCACATTGTCGGAGGCGATCATGGGTGGAACCTCCCACCAACCCCCACCTTCTTCTCCGAATGGGCTCGCAATTCAACCTTCTACATCAATGATAGACTCATAATCAAATCAAGAGGCAACGAAGTTCACGACGTTGCAAGCCCAAAATCTCAAGCAGATTTTGACGGATGTGTCCTCCCACCATTTGTTTATGATTTTGTTGGTTTCATTTCGCTACCGCGTGTTGGCCGCTTTTATTTTATCTCCGCTATGGGAAATGATTGCAATGCAGGAATGAAATTTGGTATCGACGTTCTACCAAAATTGTGA

Protein sequence

MSASITSLASFFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFGIDVLPKL

Homology

[Close]

BLAST of Cp4.1LG02g09340 vs. ExPASy Swiss-Prot
Match: P29602 (Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-10
Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 0


Query: 26  HIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNEVHDVASPKSQADFDGCVLP 85
           HIVG + GW++P +P F+S+WA   TF + D L      N  H+V   +++  FD C   
Sbjct: 5   HIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPAN-AHNVHEMETKQSFDACNFV 64

Query: 86  PFVYDFVG----FISLPRVGRFYFISAMGNDCNAGMKFGIDVL 125
               D          L  +G  YF+  +G  C+ G K  I+V+
Sbjct: 65  NSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVV 106

[Close]

BLAST of Cp4.1LG02g09340 vs. ExPASy Swiss-Prot
Match: P42849 (Umecyanin OS=Armoracia rusticana OX=3704 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.8e-07
Identity = 35/106 (33.02%), Postives = 43/106 (40.57%), Query Frame = 0


Query: 28  VGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNEVHDVASPKSQADFDGC----- 87
           VGGD  W  P  P F+  WA   TF + D L        +HDVA     A FD C     
Sbjct: 5   VGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAG-MHDVAVVTKDA-FDNCKKENP 64

Query: 88  ----VLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFGIDVL 125
                 PP        I L   G  Y+I  +G+ C  G K  I+V+
Sbjct: 65  ISHMTTPPVK------IMLNTTGPQYYICTVGDHCRVGQKLSINVV 102

[Close]

BLAST of Cp4.1LG02g09340 vs. NCBI nr
Match: XP_023525370.1 (cucumber peeling cupredoxin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268 bits (686), Expect = 7.38e-91
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MSASITSLASFFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLII 60
           MSASITSLASFFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLII
Sbjct: 1   MSASITSLASFFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLII 60

Query: 61  KSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFG 120
           KSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFG
Sbjct: 61  KSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFG 120

Query: 121 IDVLPKL 127
           IDVLPKL
Sbjct: 121 IDVLPKL 127

[Close]

BLAST of Cp4.1LG02g09340 vs. NCBI nr
Match: KAG7037208.1 (hypothetical protein SDJN02_00831, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261 bits (666), Expect = 8.30e-88
Identity = 123/127 (96.85%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MSASITSLASFFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLII 60
           MSASITSLASFFFLGALLHHAVA+ HIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLII
Sbjct: 1   MSASITSLASFFFLGALLHHAVAVDHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLII 60

Query: 61  KSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFG 120
           KSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKF 
Sbjct: 61  KSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFA 120

Query: 121 IDVLPKL 127
           IDVLP L
Sbjct: 121 IDVLPML 127

[Close]

BLAST of Cp4.1LG02g09340 vs. NCBI nr
Match: XP_022156293.1 (cucumber peeling cupredoxin-like [Momordica charantia])

HSP 1 Score: 175 bits (444), Expect = 1.52e-53
Identity = 78/120 (65.00%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 7   SLASFFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNE 66
           SLA FFF+GALLH  VA+ H VGGD GWNLPP PTFFS+WARN TF+++D+LI +S+ N 
Sbjct: 8   SLACFFFIGALLHVVVAVDHRVGGDFGWNLPPIPTFFSDWARNRTFFVDDKLIFRSKANG 67

Query: 67  VHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFGIDVLPK 126
            H +A P+SQ DFDGCV    V+DF+ FIS  R GR YFIS  GNDCNAGMKF I+VLP+
Sbjct: 68  THTIAQPQSQVDFDGCVKSGIVFDFIIFISFDRPGRHYFISTAGNDCNAGMKFAINVLPE 127

[Close]

BLAST of Cp4.1LG02g09340 vs. NCBI nr
Match: XP_038885967.1 (cucumber peeling cupredoxin-like [Benincasa hispida] >XP_038885968.1 cucumber peeling cupredoxin-like [Benincasa hispida])

HSP 1 Score: 167 bits (424), Expect = 1.78e-50
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 1   MSASITSLAS-FFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLI 60
           M+ S++S A  FFFLGAL+H +VA+ H VGG+ GWNLP TPTFFS+WA +  F++ D+LI
Sbjct: 1   MNTSMSSFACLFFFLGALVHVSVAVEHKVGGNFGWNLPSTPTFFSDWANSRPFFVGDKLI 60

Query: 61  IKSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKF 120
            +SR NE H +  P+SQA+FDGCV P F ++ + FISL R GR YFIS +GNDCNAGMKF
Sbjct: 61  FESRANETHSIGQPESQANFDGCVKPGFFFNKIIFISLDRPGRRYFISTIGNDCNAGMKF 120

Query: 121 GIDVLPKL 127
            ++VLPKL
Sbjct: 121 AVNVLPKL 128

[Close]

BLAST of Cp4.1LG02g09340 vs. NCBI nr
Match: XP_004138540.1 (cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45894.1 hypothetical protein Csa_005641 [Cucumis sativus])

HSP 1 Score: 158 bits (400), Expect = 7.22e-47
Identity = 76/128 (59.38%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 1   MSASITSLASFFFL--GALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRL 60
           MS +  S  +FFFL  G LLH  VA+ H VGG+ GWNLP TPTFFS+WA N TF+++D+L
Sbjct: 1   MSTTTISSFAFFFLLLGVLLHVGVAVEHKVGGNFGWNLPSTPTFFSDWASNRTFFVDDKL 60

Query: 61  IIKSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMK 120
           I +SR NEVH +  P SQADFDGCV P FV+  V FISL +  R YF+S  G+DC AGMK
Sbjct: 61  IFESRSNEVHSIGQPISQADFDGCVNPSFVFRKVQFISLSQPMRRYFMSTFGDDCEAGMK 120

Query: 121 FGIDVLPK 126
           F I++LPK
Sbjct: 121 FAINILPK 128

[Close]

BLAST of Cp4.1LG02g09340 vs. ExPASy TrEMBL
Match: A0A6J1DQ85 (cucumber peeling cupredoxin-like OS=Momordica charantia OX=3673 GN=LOC111023215 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 7.34e-54
Identity = 78/120 (65.00%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 7   SLASFFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNE 66
           SLA FFF+GALLH  VA+ H VGGD GWNLPP PTFFS+WARN TF+++D+LI +S+ N 
Sbjct: 8   SLACFFFIGALLHVVVAVDHRVGGDFGWNLPPIPTFFSDWARNRTFFVDDKLIFRSKANG 67

Query: 67  VHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFGIDVLPK 126
            H +A P+SQ DFDGCV    V+DF+ FIS  R GR YFIS  GNDCNAGMKF I+VLP+
Sbjct: 68  THTIAQPQSQVDFDGCVKSGIVFDFIIFISFDRPGRHYFISTAGNDCNAGMKFAINVLPE 127

[Close]

BLAST of Cp4.1LG02g09340 vs. ExPASy TrEMBL
Match: A0A0A0KAM8 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G018590 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 3.49e-47
Identity = 76/128 (59.38%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 1   MSASITSLASFFFL--GALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRL 60
           MS +  S  +FFFL  G LLH  VA+ H VGG+ GWNLP TPTFFS+WA N TF+++D+L
Sbjct: 1   MSTTTISSFAFFFLLLGVLLHVGVAVEHKVGGNFGWNLPSTPTFFSDWASNRTFFVDDKL 60

Query: 61  IIKSRGNEVHDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMK 120
           I +SR NEVH +  P SQADFDGCV P FV+  V FISL +  R YF+S  G+DC AGMK
Sbjct: 61  IFESRSNEVHSIGQPISQADFDGCVNPSFVFRKVQFISLSQPMRRYFMSTFGDDCEAGMK 120

Query: 121 FGIDVLPK 126
           F I++LPK
Sbjct: 121 FAINILPK 128

[Close]

BLAST of Cp4.1LG02g09340 vs. ExPASy TrEMBL
Match: A0A5D3D4H3 (Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00010 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 6.11e-46
Identity = 65/116 (56.03%), Postives = 88/116 (75.86%), Query Frame = 0


Query: 11  FFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNEVHDV 70
           FFFLGA++H  VA+ H VGG+ GWNLP TPTFFS+WA N TF++ND+LI +SR NE H +
Sbjct: 14  FFFLGAIVHVGVAVEHKVGGNFGWNLPSTPTFFSDWASNRTFFVNDKLIFESRSNETHSI 73

Query: 71  ASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFGIDVLPK 126
             P+SQA+FDGC+ P F  + + +ISL +  R YF+S +G+DC AGMKF +++LP 
Sbjct: 74  GQPESQAEFDGCIKPGFYLNKIQYISLSQPRRRYFMSTIGDDCKAGMKFAVNILPN 129

[Close]

BLAST of Cp4.1LG02g09340 vs. ExPASy TrEMBL
Match: A0A1S3CJW8 (cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103501290 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 6.11e-46
Identity = 65/116 (56.03%), Postives = 88/116 (75.86%), Query Frame = 0


Query: 11  FFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNEVHDV 70
           FFFLGA++H  VA+ H VGG+ GWNLP TPTFFS+WA N TF++ND+LI +SR NE H +
Sbjct: 14  FFFLGAIVHVGVAVEHKVGGNFGWNLPSTPTFFSDWASNRTFFVNDKLIFESRSNETHSI 73

Query: 71  ASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFGIDVLPK 126
             P+SQA+FDGC+ P F  + + +ISL +  R YF+S +G+DC AGMKF +++LP 
Sbjct: 74  GQPESQAEFDGCIKPGFYLNKIQYISLSQPRRRYFMSTIGDDCKAGMKFAVNILPN 129

[Close]

BLAST of Cp4.1LG02g09340 vs. ExPASy TrEMBL
Match: A0A6J1H9M4 (umecyanin-like OS=Cucurbita moschata OX=3662 GN=LOC111461385 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 1.23e-45
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 8   LASFFFLGALLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNEV 67
           LAS  F+GALLH A A+ H VGGD GWNLPPTPTFFSEWA N+TF + D L   S  N+ 
Sbjct: 9   LASLLFIGALLHAAAAVDHRVGGDFGWNLPPTPTFFSEWATNTTFSVGDTLRFNSSANQT 68

Query: 68  HDVASPKSQADFDGCVLPPFVYDFVGFISLPRVGRFYFISAMGNDCNAGMKFGIDVLPK 126
           H+ A P+SQA+FDGCV P   ++ V F++  R GR YFI  +GN CN GMKF +DVLP 
Sbjct: 69  HNYAMPESQAEFDGCVKPGIFFENVIFVTFDRPGRKYFICNVGNHCNLGMKFAVDVLPS 127

[Close]

BLAST of Cp4.1LG02g09340 vs. TAIR 10
Match: AT3G20570.1 (early nodulin-like protein 9 )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 30/111 (27.03%), Postives = 48/111 (43.24%), Query Frame = 0


Query: 17  LLHHAVAIGHIVGGDHGWNLPPTPTFFSEWARNSTFYINDRLIIKSRGNEVHDVASPKSQ 76
           ++  A A    VGG  GW +P     +S+WA  S F I D L+   + N+  D     ++
Sbjct: 21  IVDRAYAREFTVGGATGWTVPSGSQVYSQWAEQSRFQIGDSLLFVYQSNQ--DSVLQVTR 80

Query: 77  ADFDGCVLPPFVYDFVG---FISLPRVGRFYFISAMGNDCNAGMKFGIDVL 125
             +D C        F      ++L   G +YFIS   ++C    K  + V+
Sbjct: 81  DAYDSCNTDSPTAKFADGKTSVTLNHSGPYYFISGNKDNCKKNEKLVVIVM 129

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g09340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29602	3.9e-10	32.04	Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3	[more]
P42849	6.8e-07	33.02	Umecyanin OS=Armoracia rusticana OX=3704 PE=1 SV=1	[more]

BLAST of Cp4.1LG02g09340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525370.1	7.38e-91	100.00	cucumber peeling cupredoxin-like [Cucurbita pepo subsp. pepo]	[more]
KAG7037208.1	8.30e-88	96.85	hypothetical protein SDJN02_00831, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022156293.1	1.52e-53	65.00	cucumber peeling cupredoxin-like [Momordica charantia]	[more]
XP_038885967.1	1.78e-50	60.16	cucumber peeling cupredoxin-like [Benincasa hispida] >XP_038885968.1 cucumber pe...	[more]
XP_004138540.1	7.22e-47	59.38	cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45894.1 hypothetical prot...	[more]

BLAST of Cp4.1LG02g09340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQ85	7.34e-54	65.00	cucumber peeling cupredoxin-like OS=Momordica charantia OX=3673 GN=LOC111023215 ...	[more]
A0A0A0KAM8	3.49e-47	59.38	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G018590...	[more]
A0A5D3D4H3	6.11e-46	56.03	Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CJW8	6.11e-46	56.03	cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103501290 PE=4 SV...	[more]
A0A6J1H9M4	1.23e-45	58.82	umecyanin-like OS=Cucurbita moschata OX=3662 GN=LOC111461385 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g09340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20570.1	2.0e-06	27.03	early nodulin-like protein 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 35..117 e-value: 1.0E-7 score: 31.8
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 24..125 score: 20.93895
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 22..125 e-value: 6.0E-20 score: 73.5
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 25..124
None	No IPR available	PANTHER	PTHR33021:SF360	OS08G0482600 PROTEIN	coord: 6..123
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 6..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g09340.1	Cp4.1LG02g09340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0009055	electron transfer activity