Cp4.1LG02g08170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g08170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG02: 290690 .. 293547 (+)
RNA-Seq ExpressionCp4.1LG02g08170
SyntenyCp4.1LG02g08170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTGGGCGAATACCAGGCTTCAGCCTAAATCGTTTCCCAGAAAAGCCCAGTTTTCTGGAGTCACTGGCCCAACTCCAGTCCTTCTCCAGATCGTCGTCTTCCTTCATGACCTTCGAACTCAGAACTGAACAACAGAAATAGTTAACGTCAGATTGAACCAGAAATGGAATTCACTTCAGTTTGATCCACAGTGGGCTTGACGAACTGGTAGTAGCACCATCTATTTGTCCTCTAGGTAAGTCCGTACATTATAGAAGAAATTTACGTTTACGTTTTGCCCTAGCTTTTGTTCGATATGATTCTGCTAGAAGATATTCATTTTGTCCAACTAGTCTTCAGAGCCAAGAGATTTCGATTATTTGTTCTACAAATTTCTCCACGTCTGAATTTTACTGGTGGAAGAATTTTGTATACAGTCGAATTCTTCCGCTATATCTAACATTGTAGAAATGTTGTACAGGAAGAGAACTCGCCATGGTTCTCCCCCTCGATTTACAGGAATTTATTCTCCGTGCAAGAGTGTTGAAGCTGTACAGGCAGGCTCTAAGAACTGCTCAAAAAGCTCCTGTCCACGCTCGAGGTTAAGCTTTTGATTATGATCTTACAATGAAGTATTGTTTTGATGACGAACATCCACTTTCTATGCATTTTTCTTGTCATGATCTTCAGATGTCATTTGAATTCACCCTGGTTTCATTTCGGATTTCGTTAGTTTTGAAATTGTCTGCTTTGAACAGAGGAACTGAGGCATACAATCAGACAAGAAATGGAGAACAACCGCGGCTGCAACGAGAGACAGAAAGTAAGGTTTCTGCTCAGTGAAGGAATAGAGAGATTGAAGCGTTTAGAGGAGATGTTGGATATGCAGGGTAACTAAGAAAGATTGTCATCACCGGCATTATTCAGTAATCTTTTCAAATCTCTGTTACTTCAGTATGATATTGATACTCAAAGTTGAACATTGTCTTGATGAAATGATTGGATTCTGAAAACAATAATTGAATTCCTTGCAAAATTTCAATAACAAAAACAGATCTTTTAATTCCAAAAACCTGGTCTACATTTTAGTAGAGAACAAAACAAAGAAGCTTAAGAAGAGGTTCAAGAGAACCAAACAGCCCCTTGTAATTTGTCCCCTCCTAATTTTAAGTATCTAATCTAGGAACCTTTTGCCTTCTAATACTGTTGTAGACAGCTCTCCCAGCCCACGCAAGTGGCAGCCTCAGGCCAATTCACATAGGATCTTAACAATATCAAAGCAATGACTCCAGCCATACAAACTGCTGGGTGATAGTTATAGTTATCAAATGGGGCTTTAACTTCTTGTGTCGGTCGACACTTTGCCAACATAACTACACCTTCGAGTATAAAAGAAGCCAGTTACTCTAAAGGGGCCGTGAGGCAAAACCTCTCTCAACCATCTTATCCACCAATTCCTCATGCTTCTTCAACTGTCCTGCCTTTCGCAGCTGCTGCAGAACCATCTCATAGATGGGCATGCTGGGCTTTAAGCATTTCTCCTCAATCATTTCCCTGAAGAACTTGTAGGCATTGTTCCAATGCCCCATCCCACAATATAACGATATCAGTACTTGGTAAGTATTCAAATTAGGCTCAACTTCTTCTTCTTCCATCTCCTTCTTCAACTTGAAAATCATATCAGCAGATTTCGATTCTGCAAACATCCGCATTAAGATATTGTACGTCACTGTATTTGGCTTACAACCCAGATCCTTCATCTTAGCAAACATCCTATGAACACCATTTACATCATGCGACTTCACGATACACCTAAATATGGGATTAAAGGTCGACGCATTCGGGGTACAGCCTTTCTTAGCCATAGAGTTGAGGACCTTTGTAGCCTCTCCAAGATTATCATCCTTACAATGAGTCTCAATAAGAAAGTTATAAGTAATTATGTCAGCAGCACAACCCAATCTCTTCATTTGATTGTACACTTGCAAAACCTTCTCTGTTCTACCAGCTTTCACGTGGACTCTTATAAGATTGTTGAATGTAACTGAGTTGGGATTGCAACCAGCATCAATCATCTCAGAGAAAACATCATGGGCACGAGTAATTTGGCCACATCTACACAATGCATCAATCACAATGCTGTAAGTATAAACATTAGGGCTAATACCTGCCATCTTCATCTCTTTAAACACCCTCTCGGCCTCTGATATATCACCGGCCCGACACCAGCCATGGACCAGGTTAGTGTAAACAATAACATCAGGTTCAAATTTATGTTTCAGATTGTCAAAAAATGACTGGGCTTCAGTTGCCCTTCTCTTCTTGCACAGAATGCTGATAACAATTGTGAAAGCAATCTTGTCAGGATTGCAGCCGTAGTCCTCCATGCGATTAAACGCATGAACCGCCTCCGCCGCCAATCCAGCCCTCACATACCGCCGGACAAGAATCGAGAAGGTTTCAACAGTAATTTCAACATTTCTAGCTTTCATCAGATCAATCAAATGCCACGCTAATCCGAATTGTTTCACCTTACCGGCTAGGTCAATCATCTCGTTGTAGGGCTGTGCAGAGTGCTCGAACGTCTCGCTTGCCGTCGCCCAGTTGAAGAACGCGAGGGCTTGGAGGAAGGGGATGCCATGGCGGACGCCACCAGATTTCTCGATGACGTAACGAACGACGGCCGGAGAGACGACCTGGACAGGTGAGATTTGGGATAGTTCGTTGGAGAGAGCAGAAATGGTGAAGTTAGGGCTTGGTGGAGTGGGATCGGGACTGGGATTTCTTCGATAGTATTCCTTAATTAGGGAAAGGAATTTATCGGCGGCCTGGATTTCTTCCGGTAAGAGGACAGGCTTTGAGGCTTTCGGAGTAGTAT

mRNA sequence

TACTGGGCGAATACCAGGCTTCAGCCTAAATCGTTTCCCAGAAAAGCCCAGTTTTCTGGAGTCACTGGCCCAACTCCAGTCCTTCTCCAGATCGTCGTCTTCCTTCATGACCTTCGAACTCAGAACTGAACAACAGAAATAGTTAACGTCAGATTGAACCAGAAATGGAATTCACTTCAGTTTGATCCACAGTGGGCTTGACGAACTGGTAGTAGCACCATCTATTTGTCCTCTAGGAAGAGAACTCGCCATGGTTCTCCCCCTCGATTTACAGGAATTTATTCTCCGTGCAAGAGTGTTGAAGCTGTACAGGCAGGCTCTAAGAACTGCTCAAAAAGCTCCTGTCCACGCTCGAGAGGAACTGAGGCATACAATCAGACAAGAAATGGAGAACAACCGCGGCTGCAACGAGAGACAGAAAGTAAGGTTTCTGCTCAGTGAAGGAATAGAGAGATTGAAGCGTTTAGAGGAGATGTTGGATATGCAGGGTAACTAAGAAAGATTGTCATCACCGGCATTATTCAGTAATCTTTTCAAATCTCTGTTACTTCAGTATGATATTGATACTCAAAGTTGAACATTGTCTTGATGAAATGATTGGATTCTGAAAACAATAATTGAATTCCTTGCAAAATTTCAATAACAAAAACAGATCTTTTAATTCCAAAAACCTGGTCTACATTTTAGTAGAGAACAAAACAAAGAAGCTTAAGAAGAGGTTCAAGAGAACCAAACAGCCCCTTGTAATTTGTCCCCTCCTAATTTTAAGTATCTAATCTAGGAACCTTTTGCCTTCTAATACTGTTGTAGACAGCTCTCCCAGCCCACGCAAGTGGCAGCCTCAGGCCAATTCACATAGGATCTTAACAATATCAAAGCAATGACTCCAGCCATACAAACTGCTGGGTGATAGTTATAGTTATCAAATGGGGCTTTAACTTCTTGTGTCGGTCGACACTTTGCCAACATAACTACACCTTCGAGTATAAAAGAAGCCAGTTACTCTAAAGGGGCCGTGAGGCAAAACCTCTCTCAACCATCTTATCCACCAATTCCTCATGCTTCTTCAACTGTCCTGCCTTTCGCAGCTGCTGCAGAACCATCTCATAGATGGGCATGCTGGGCTTTAAGCATTTCTCCTCAATCATTTCCCTGAAGAACTTGTAGGCATTGTTCCAATGCCCCATCCCACAATATAACGATATCAGTACTTGGTAAGTATTCAAATTAGGCTCAACTTCTTCTTCTTCCATCTCCTTCTTCAACTTGAAAATCATATCAGCAGATTTCGATTCTGCAAACATCCGCATTAAGATATTGTACGTCACTGTATTTGGCTTACAACCCAGATCCTTCATCTTAGCAAACATCCTATGAACACCATTTACATCATGCGACTTCACGATACACCTAAATATGGGATTAAAGGTCGACGCATTCGGGGTACAGCCTTTCTTAGCCATAGAGTTGAGGACCTTTGTAGCCTCTCCAAGATTATCATCCTTACAATGAGTCTCAATAAGAAAGTTATAAGTAATTATGTCAGCAGCACAACCCAATCTCTTCATTTGATTGTACACTTGCAAAACCTTCTCTGTTCTACCAGCTTTCACGTGGACTCTTATAAGATTGTTGAATGTAACTGAGTTGGGATTGCAACCAGCATCAATCATCTCAGAGAAAACATCATGGGCACGAGTAATTTGGCCACATCTACACAATGCATCAATCACAATGCTGTAAGTATAAACATTAGGGCTAATACCTGCCATCTTCATCTCTTTAAACACCCTCTCGGCCTCTGATATATCACCGGCCCGACACCAGCCATGGACCAGGATTGCAGCCGTAGTCCTCCATGCGATTAAACGCATGAACCGCCTCCGCCGCCAATCCAGCCCTCACATACCGCCGGACAAGAATCGAGAAGGTCAATCATCTCGTTGTAGGGCTGTGCAGAGTGCTCGAACGTCTCGCTTGCCGTCGCCCAGTTGAAGAACGCGAGGGCTTGGAGGAAGGGGATGCCATGGCGGACGCCACCAGATTTCTCGATGACGTAACGAACGACGGCCGGAGAGACGACCTGGACAGGTGAGATTTGGGATAGTTCGTTGGAGAGAGCAGAAATGGTGAAGTTAGGGCTTGGTGGAGTGGGATCGGGACTGGGATTTCTTCGATAGTATTCCTTAATTAGGGAAAGGAATTTATCGGCGGCCTGGATTTCTTCCGGTAAGAGGACAGGCTTTGAGGCTTTCGGAGTAGTAT

Coding sequence (CDS)

ATGAACACCATTTACATCATGCGACTTCACGATACACCTAAATATGGGATTAAAGGTCGACGCATTCGGGGTACAGCCTTTCTTAGCCATAGAGTTGAGGACCTTTGTAGCCTCTCCAAGATTATCATCCTTACAATGAGTCTCAATAAGAAAGTTATAAGTAATTATGTCAGCAGCACAACCCAATCTCTTCATTTGATTGTACACTTGCAAAACCTTCTCTGTTCTACCAGCTTTCACGTGGACTCTTATAAGATTGTTGAATGTAACTGA

Protein sequence

MNTIYIMRLHDTPKYGIKGRRIRGTAFLSHRVEDLCSLSKIIILTMSLNKKVISNYVSSTTQSLHLIVHLQNLLCSTSFHVDSYKIVECN
Homology
[Close]
BLAST of Cp4.1LG02g08170 vs. NCBI nr
Match: RXH91052.1 (hypothetical protein DVH24_020075 [Malus domestica])

HSP 1 Score: 90.5 bits (223), Expect = 7.64e-19
Identity = 42/90 (46.67%), Postives = 68/90 (75.56%), Query Frame = 0 

Query: 1   MNTIYIMRLHDTPKYGIKGRRIRGTAFLSHRVEDLCSLSKIIILTMSLNKKVISNYVSST 60
           ++TI+I++L + PKYGI+ R IRG AFL+H++E L  + KI++LT++L KK++SN +   
Sbjct: 112 VSTIHILQLRNAPKYGIEARCIRGAAFLNHQIEHLNCIFKILVLTVTLYKKIVSNGIRIA 171

Query: 61  TQSLHLIVHLQNLLCSTSFHVDSYKIVECN 90
           +Q LHLI +LQ+LL   S H++ ++I+E N
Sbjct: 172 SQPLHLITNLQHLLSPASLHMNPHQIIEGN 201

[Close]
BLAST of Cp4.1LG02g08170 vs. NCBI nr
Match: PON80872.1 (hypothetical protein TorRG33x02_233680 [Trema orientale])

HSP 1 Score: 83.6 bits (205), Expect = 5.09e-17
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 0 

Query: 1  MNTIYIMRLHDTPKYGIKGRRIRGTAFLSHRVEDLCSLSKIIILTMSLNKKVISNYVSST 60
          M+TI I +LHD PKY IK R I  T FL+H+++ L  L +I+IL M+L KKVI N +S  
Sbjct: 1  MSTINIFKLHDQPKYRIKSRCIGITPFLNHQIKHLSCLFEILILAMTLYKKVICNGISRA 60

Query: 61 TQSLHLIVHLQNLLCSTSFHVDSYKIVECN 90
           + LHLI HLQ+L  S S  ++S++++E N
Sbjct: 61 LKLLHLIKHLQDLFGSPSLDMNSHQVIESN 90

[Close]
BLAST of Cp4.1LG02g08170 vs. NCBI nr
Match: PON59826.1 (hypothetical protein PanWU01x14_157210 [Parasponia andersonii])

HSP 1 Score: 82.4 bits (202), Expect = 1.40e-16
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1  MNTIYIMRLHDTPKYGIKGRRIRGTAFLSHRVEDLCSLSKIIILTMSLNKKVISNYVSST 60
          M+TI I +LHD PKY  K R IR T FL+H+++ L  L +++IL M+  KKVI N +S  
Sbjct: 1  MSTINIFKLHDQPKYRTKSRCIRITPFLNHQIKHLSCLFEVLILAMTFYKKVICNGISRA 60

Query: 61 TQSLHLIVHLQNLLCSTSFHVDSYKIVECN 90
           + LHLI HLQ+L  S S  ++S++++E N
Sbjct: 61 LKLLHLIKHLQDLFGSPSLDMNSHQVIESN 90

[Close]
BLAST of Cp4.1LG02g08170 vs. NCBI nr
Match: KAF5803991.1 (hypothetical protein HanXRQr2_Chr06g0277891 [Helianthus annuus])

HSP 1 Score: 69.7 bits (169), Expect = 2.01e-12
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 0 

Query: 1   MNTIYIMRLHDTPKYGIKGRRIRGTAFLSHRVEDLCSLSKIIILTMSLNKKVISNYVSST 60
           M  I+I R    PK  +K  RIR T FL HR+++L     I++  M+L +K++SN +  T
Sbjct: 87  MRAIHIARFQYLPKNRVKTTRIRLTPFLHHRIQNLYRFIAILVFAMTLYEKIVSNQIRFT 146

Query: 61  TQSLHLIVHLQNLLCSTSFHVDSY 84
            + LHLI++LQ+LL  T FH++++
Sbjct: 147 RKPLHLIINLQDLLSPTRFHMNTH 170

[Close]
BLAST of Cp4.1LG02g08170 vs. ExPASy TrEMBL
Match: A0A498JB82 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_020075 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.70e-19
Identity = 42/90 (46.67%), Postives = 68/90 (75.56%), Query Frame = 0 

Query: 1   MNTIYIMRLHDTPKYGIKGRRIRGTAFLSHRVEDLCSLSKIIILTMSLNKKVISNYVSST 60
           ++TI+I++L + PKYGI+ R IRG AFL+H++E L  + KI++LT++L KK++SN +   
Sbjct: 112 VSTIHILQLRNAPKYGIEARCIRGAAFLNHQIEHLNCIFKILVLTVTLYKKIVSNGIRIA 171

Query: 61  TQSLHLIVHLQNLLCSTSFHVDSYKIVECN 90
           +Q LHLI +LQ+LL   S H++ ++I+E N
Sbjct: 172 SQPLHLITNLQHLLSPASLHMNPHQIIEGN 201

[Close]
BLAST of Cp4.1LG02g08170 vs. ExPASy TrEMBL
Match: A0A2P5E5R1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_233680 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.47e-17
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 0 

Query: 1  MNTIYIMRLHDTPKYGIKGRRIRGTAFLSHRVEDLCSLSKIIILTMSLNKKVISNYVSST 60
          M+TI I +LHD PKY IK R I  T FL+H+++ L  L +I+IL M+L KKVI N +S  
Sbjct: 1  MSTINIFKLHDQPKYRIKSRCIGITPFLNHQIKHLSCLFEILILAMTLYKKVICNGISRA 60

Query: 61 TQSLHLIVHLQNLLCSTSFHVDSYKIVECN 90
           + LHLI HLQ+L  S S  ++S++++E N
Sbjct: 61 LKLLHLIKHLQDLFGSPSLDMNSHQVIESN 90

[Close]
BLAST of Cp4.1LG02g08170 vs. ExPASy TrEMBL
Match: A0A2P5CFL4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_157210 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.76e-17
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1  MNTIYIMRLHDTPKYGIKGRRIRGTAFLSHRVEDLCSLSKIIILTMSLNKKVISNYVSST 60
          M+TI I +LHD PKY  K R IR T FL+H+++ L  L +++IL M+  KKVI N +S  
Sbjct: 1  MSTINIFKLHDQPKYRTKSRCIRITPFLNHQIKHLSCLFEVLILAMTFYKKVICNGISRA 60

Query: 61 TQSLHLIVHLQNLLCSTSFHVDSYKIVECN 90
           + LHLI HLQ+L  S S  ++S++++E N
Sbjct: 61 LKLLHLIKHLQDLFGSPSLDMNSHQVIESN 90

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g08170 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g08170 vs. NCBI nr
Match NameE-valueIdentityDescription
RXH91052.17.64e-1946.67hypothetical protein DVH24_020075 [Malus domestica][more]
PON80872.15.09e-1748.89hypothetical protein TorRG33x02_233680 [Trema orientale][more]
PON59826.11.40e-1646.67hypothetical protein PanWU01x14_157210 [Parasponia andersonii][more]
KAF5803991.12.01e-1240.48hypothetical protein HanXRQr2_Chr06g0277891 [Helianthus annuus][more]
BLAST of Cp4.1LG02g08170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A498JB823.70e-1946.67Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_020075 PE=4 SV=1[more]
A0A2P5E5R12.47e-1748.89Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_233680 PE=4 SV... [more]
A0A2P5CFL46.76e-1746.67Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_157210 PE... [more]
BLAST of Cp4.1LG02g08170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g08170.1Cp4.1LG02g08170.1mRNA