Cp4.1LG02g08070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g08070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	BRCA1-A complex subunit BRE
Location	Cp4.1LG02: 353458 .. 358576 (+)
RNA-Seq Expression	Cp4.1LG02g08070
Synteny	Cp4.1LG02g08070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGCGCGCAGCTAAGTACCCCTAAAATCGAAATAGAGAGTTTTGAGTAAAGAGTCAGGAAGCTGTGTACTATTTAAAGGAGAATGGGCAAGTCATTTTAGGGTTTCCTTCTCCGCTACCCATTGACGATTTTGCCCCTGCTTTCTTGGGCCAGAATCTCTCCTCATGGACCAATAACGTGAGACCAGTAAACGGCCCAAGCTCGGCAATCGAGCCCATTGGCCCATTTTGCGACTTGAATTTACTGAAGTCGCAGTTTAGATTTGTGGTTCGGTAAAGTCGTCGAAGAAGGCAGCGGTTTCAAGAATTTTGAGCTGTTCGTTGATCGAAAATCGGGGCCTCTTCACGGTAAGAGGGTAGTGGTGTGATTTTCCTGAGCTGATTCGTAAGGTGTTCATTGCTGTTTCAGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTCATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTTCCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGGTAAACAATTCCGCTTACTATCTCTTCCTTGAAAATTCGGGGATAACAAAAACAAATGGCGATTTCTAGTTTATTACATTGATCGGAAATGGATGATATTCGGAGTTCTTTCTTTCTTTTTTCCCTCCATTTTCCCACCCCGATGATAGTATTTAGTGTAGCTATAATATGGCGATAGAAAGCGAACGGTTTGTTGAACAGATCACTTATTCTTACTGTTCTGATATTCAGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGTAAGACCTGTTTTCCATTGTTGTTATCATAATATCCTTTCAATTCTTTTCTCTTTCCCAGTAACTGGTTGACAGATTCACCGTAACTAGCTGTTTGATAGCTGTTACCTGTCGTAGGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCTCCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCATTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAACAGTCTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGTTCTTCAGGGCTTTCCTTTGATTGAGCCTTCTTCTGTTTCTAATGCTTTGGGTATAATTCAGCTTGAATTCAAAGGCAACTTTACTTTTTTTAAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACTATGTTATCTAGGGAGGTAACGTCCTTCATTATAATGTTTATTATACTGTCCTAACTCTGTTTTGATAATCAATTGCATGAGTTTAGGAATTTGAGGGGTCGGGTATTGGACTTGGTTTCTTGATAATACATTCTTGCTGGATGCCTGTAGAAATGTATAAAACTTTATAATTTAGTTTTCATGCTTGGAAACTGAATGAGAGAACTGCTGCTAGTTAATTATTCCAGTTTTTTCATGCTTGAATTATAGTAGTGTAGAAGTTAAACNTTTTTTTTTAATTTTAAATTTTTGCTTATAACCATGTATTCCTTTAGTTGGGCAAGCTGCTCCTTATACAGATATCTGTGTTCTCTCCTTAAGGTTCTATTATTTTCAATGGTAACTTAACCAAAACTACCTTTCTGCAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGGTAGTATTTTAAAGTATGTGGTTGTACTTTCCTTGAATTGTAAAGAGTTGAATACTGAGAATTCTATTTTCTCTCTCTTTATTCTCATATGTGCGGCTTCTATGCCTTTGAATTTTAGCATAGCCAGAGGAGGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCGTGGAGGCACCCACAGAAGATATTTTTGCAGGTTTCCTTTCTGAACTTCTGGTTTTCCTGTTCCTCTATTATTTCCCATTCTCATCATTGTTTATAGGTTTTATATCCTGTGGTGAGGAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAGGATACTCTCTCTCTTGTATTTCATTTCTATTTCTGCAGCGGTCAAGATTGCATGCTAAAATTGATATCATTTTCTTTTTTAACTGGCTTCAAGGTGCATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTTGGTTAGATTTTTACCGGACAGATGATACTCTCTGGGTTGATTAACTTGGTCTTTAGTTTTGGAAGTTGCCTAAAGTTGAAATTTTGTACTTTTATCATTCTGATGAAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGGGATTCTTACAAATTTATTTACACCCGTCGTCTTCATTTGTTGAAAATCATCATCCAATTCTTAATTTAAGTGGTGGGGGCTCGTCAAATTTTACTGACGATATGATTTTTTTTTTAGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACGTTCCTGGTATTGGCTTCACTATCCTTAATATGTAGTATCCCATCACTATGTGGATTTTTTCGATTATTTACGATGTAAAAGAATATTGTTCACGTAATGGTTAGTTAATTCTTGCGATTGATAGGTTTCTTTAATCCACGATCATGTTGTCAAAATCTGCGGATGCTAGGATTAGTACCCTGGTCTGTAGATCTTCAGATAGCATAATATTGACTAGATGATCACCACCCAAAATATTTGGTACAATATTCTGGGGTCCAGTGCTGACAAAGATAGCCTTCAAATTTTCATTTTCAGAGAGAAGCCCGAAATAAAGGATCCCTAAAACAAAAACAAAACAGTGGATAATTTTTTAAAAGGGGAAAAGAAAGAGAATAAAATTTTTAGAGAACATCCAAACATAGGCATTAAAGAAAGCGACACTCACTCTAAACTTCCTTACAACACCTTTCTACATTCTTGAAGGAATGACCGTCTGCTTGAAAAACTGACAAACTCTGACATACACCAACAACCTGTACTTGGATTATTAGCTCTCACCACTGGGAAATGTCCTCAAATCTTCACAACAAAGTGGCATCTCCATAAAACATAATCTAATTCTTCCAATGCCCTTCCGCATAAAATACACCACTGAGACCCACAACCGAAGATGAATGTTTGACAAGTTCATGATGTCAAATTTGATTATTTTGACTATGCGTTGGTCAAATATTGACCTTGCTAACTGATTTTTACTTTTTATCTTTTTGCTGAAGAAATGCGTTATCTCTTTGAATTGGATGATAGCCAAGACATTTTGCAACTATTTATCCTTTCAAATGGTTTCTCTATTCTGTCCAGTTTCTATGAGACATTTTCGTGACACAGTTTCACACAAATCTTTCTTTTGATGTCAAATGTATAATAATTTGGAACAGAACGTATGCTAGACTTGCAAATCTCTTGATGGTTAATGATTTACTGATCGCACTAAGGATACTGGATCAGTGGTAAATGCTTTAAAAATTCTTTTGGTTTTAAATTAAACTACGATAGTGCGTATTGATCTGGTAAGATGGGGCATGGAATGCAGTTAATGTTTATTGATTGACAAAATAGTTTAGTTTGTTTTTTTTTATATATAAGAGACAACATAGGAATTTATTTTCCTTTCCCTTGTTTTTCTGGGAATTTTTTGTTAATGCTAGGTCCATTTCCTCATGTCAACCCAATTTCCAAAGAAACAACCCTCTCTTGTGCTGCAAAGTTCTCAGGTAATGTAAATTTGTCTTGAATCTTGAAATTCTTGTGCATTCCAACTTTGCTTACTAGTACATATGACAAAGGCCATGAATATATGCTTCTATGATTTTCATCAACATGCTCCTGTGGTCGTCCAAACTCTCCTTTATTTAGACTCCGTTATCATTTGTTATTTTCTAAAAAATCTGTACATCGTGACTAATGATCGTAAATATGTTAATAGGGAATATTTGGTTAATCAATTTTTATGAGGACGCATGTCTTGAAGTGATTAAATGACATGATAGGTGCAATCTGTATAACTCTAGTTTCCAAGGATTTTTCTGTTCATTATGAATCGGACTGACATCATTGAGATGGCTTCTTACTTTTATCAATATTTGATGGGCCTACTAGGTTTTATAAAGATCCCTTCTTGGATTATTGGTTTAGTACCCTCTTTTTCTAATTATGCCCATATATTGTTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTGTAAGTTGTTTCTCTATCTCTCATTTTCTCGTTTGCATATACGTTCACTTATCAATCGTGTTAATACCGATTTGGTTCGATTTTAACAGCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGATTGGATTATGAAAACTCTGGTCAATCTGCCGTAACATGTAACAGTCCAATACCAGTTATGTATAGTTGGTTTGTTGAGTACTTTTAAATCTTGAGATTTTTAGATTTGTTTTTGTCACCTCTTTGGGGCTGTCTGTCTCCTCGATGAGGATGATTCGAAGGTACATTTTATCAAGAACCGGATGTGAGCTTTCAAATTTAGAGAATCCTTATCTGTTATAAAAGTCGAATCCAGAAACAAAAGACGACCCTCAACGGGGCTGACCATGATTATTGTATTACATTTTTTTTTTTTTGTTGAACAGAGCAAAATCAACTGACCAATTATGCGGGTTGCTTAAAATGCTCTCTTTGTAGGATCGCACTTAATTGAGAGTGGTTTCAAAATAAGGTCTTCATGAATTTTGTCC

mRNA sequence

ATGCAGAGCGCGCAGCTAAGGTTTCCTTCTCCGCTACCCATTGACGATTTTGCCCCTGCTTTCTTGGGCCAGAATCTCTCCTCATGGACCAATAACGTGAGACCAGTAAACGGCCCAAGCTCGGCAATCGAGCCCATTGGCCCATTTTGCGACTTGAATTTACTGAAGTCGCAGTTTAGATTTGTGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTCATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTTCCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCTCCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCATTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAACAGTCTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGCTTGAATTCAAAGGCAACTTTACTTTTTTTAAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACTATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGGTTTTATATCCTGTGGTGAGGAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTGCATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACGTTCCTGGTCCATTTCCTCATGTCAACCCAATTTCCAAAGAAACAACCCTCTCTTGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGATTGGATTATGAAAACTCTGGTCAATCTGCCGTAACATGTAACAGTCCAATACCAGTTATGTATAGTTGGTTTGTTGAGTACTTTTAAATCTTGAGATTTTTAGATTTGTTTTTGTCACCTCTTTGGGGCTGTCTGTCTCCTCGATGAGGATGATTCGAAGGTACATTTTATCAAGAACCGGATGTGAGCTTTCAAATTTAGAGAATCCTTATCTGTTATAAAAGTCGAATCCAGAAACAAAAGACGACCCTCAACGGGGCTGACCATGATTATTGTATTACATTTTTTTTTTTTTGTTGAACAGAGCAAAATCAACTGACCAATTATGCGGGTTGCTTAAAATGCTCTCTTTGTAGGATCGCACTTAATTGAGAGTGGTTTCAAAATAAGGTCTTCATGAATTTTGTCC

Coding sequence (CDS)

ATGCAGAGCGCGCAGCTAAGGTTTCCTTCTCCGCTACCCATTGACGATTTTGCCCCTGCTTTCTTGGGCCAGAATCTCTCCTCATGGACCAATAACGTGAGACCAGTAAACGGCCCAAGCTCGGCAATCGAGCCCATTGGCCCATTTTGCGACTTGAATTTACTGAAGTCGCAGTTTAGATTTGTGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTCATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTTCCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCTCCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCATTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAACAGTCTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGCTTGAATTCAAAGGCAACTTTACTTTTTTTAAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACTATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGGTTTTATATCCTGTGGTGAGGAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTGCATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACGTTCCTGGTCCATTTCCTCATGTCAACCCAATTTCCAAAGAAACAACCCTCTCTTGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGA

Protein sequence

MQSAQLRFPSPLPIDDFAPAFLGQNLSSWTNNVRPVNGPSSAIEPIGPFCDLNLLKSQFRFVLTGSPDRLPAINRVISLFSLAAKAMSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQELSLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

Homology

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BLAST of Cp4.1LG02g08070 vs. ExPASy Swiss-Prot
Match: Q568D5 (BRISC and BRCA1-A complex member 2 OS=Danio rerio OX=7955 GN=babam2 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.9e-22
Identity = 97/322 (30.12%), Postives = 147/322 (45.65%), Query Frame = 0


Query: 128 DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 187
           DRF L IPY  E +KWDI+++A  P   PD +FG ED +F P  S++            +
Sbjct: 57  DRFKLHIPYAGETLKWDIIFNARDPELPPDFIFG-EDADFLPEPSELP-----------N 116

Query: 188 LRDWNSKDPSRLTSLLQEL----------SLNSKATLLFLRDRYAS----------YQRK 247
           L  W+S  P  L  L++E+           L   + LLF  D              Y  +
Sbjct: 117 LVSWDSGKPECLLLLVKEMLQQYHQYQCQRLRDSSRLLFEYDSLLEDPNYGRNMEIYAGR 176

Query: 248 RVEGVEDERLKFELCTMLSREGIEMH------LSSGVEKVLYPVVRKYA-STPAAPRLKL 307
           +     +   +F L   +    I ++      L  G +  L  V  + A +T   P+L L
Sbjct: 177 KNSWTGEFSARFLLKLPVDFSNIPIYLLKDTALDPGEDVALLSVSFEDAEATQVFPKLYL 236

Query: 308 VSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDS 367
            S S   AL     + +P++  G C+ +Y+P + + L  +V   +   + RR +I A  S
Sbjct: 237 -SPSIEHALGGSSALHIPAFPSGGCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLS 296

Query: 368 FFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPI 422
            FG   +E D V     T++     F FLVH  +   FP+ QP+L  QS  HF S G  +
Sbjct: 297 HFGMGVVEYDAVGFTKLTLLLMWKDFCFLVHVDLPLYFPRDQPTLTFQSIYHFTSSG-QL 356

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy Swiss-Prot
Match: Q6DJ78 (BRISC and BRCA1-A complex member 2 OS=Xenopus tropicalis OX=8364 GN=babam2 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.9e-22
Identity = 94/322 (29.19%), Postives = 147/322 (45.65%), Query Frame = 0


Query: 128 DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 187
           DRF L IPY  E +KWDI+++A  P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNATYPELPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 188 LRDWNSKDPSRLTSLLQEL----------SLNSKATLLF----------LRDRYASYQRK 247
           L +WN  DP  L  +++EL           L+  + L+F            +    Y  K
Sbjct: 114 LAEWNPSDPECLLLVVKELVQQYHQYQCSRLSESSRLMFEYQTLQEEPQYGENMEIYAGK 173

Query: 248 RVEGVEDERLKFELCTMLSREGIEMHL------SSGVEKVLYPVVRKYA-STPAAPRLKL 307
           +     +   +F L   +    I ++L        G +  L  V  + A +T   P+L L
Sbjct: 174 KNNWTGEFSARFLLKLPVDFSNIPIYLLKDSNEDPGEDVALLSVSFEDAEATQVFPKLFL 233

Query: 308 VSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDS 367
               E  AL     + +P++  G C+ +Y+P + + L  +V   +   + RR +I A  S
Sbjct: 234 SPRIE-HALGGSSALHIPAFPSGSCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLS 293

Query: 368 FFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPI 422
            FG   +E D       T++ +   F FLVH  +   FP+ QP+L  QS  HF + G  +
Sbjct: 294 HFGTGVVEYDAEGFTKLTLLLSWKDFCFLVHIDLPLYFPRDQPTLTFQSVYHFTNSG-QL 353

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy Swiss-Prot
Match: B6NXD5 (BRISC and BRCA1-A complex member 2 OS=Branchiostoma floridae OX=7739 GN=BABAM2 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-21
Identity = 84/345 (24.35%), Postives = 148/345 (42.90%), Query Frame = 0


Query: 128 DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 187
           DRF + IP+  + +KW++++D+  P + PD +F  E+ NF P   K++           +
Sbjct: 56  DRFKIYIPFAGDSLKWEVIFDSCQPSNPPDFIFLGENGNFDPDIEKLE-----------N 115

Query: 188 LRDWNSKDPSRLTSLLQELSLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSR 247
           L  W+ K+P  L   +++L          +R+ Y  YQ++ +EG    RL+FE  ++   
Sbjct: 116 LTHWDPKNPESLVLAIEDL----------MRE-YRCYQKQLIEGY--SRLQFEYSSLQGM 175

Query: 248 EG---IEMHLSSGVEKVLYPVVRKYASTP------------------------------- 307
           E    +E+H+ + +   L   V      P                               
Sbjct: 176 EACDDVEVHMGNRLPGTLDSPVNFLIRLPIDLSPIPQYLVKDDPGEDLAVLLAKFHNSEG 235

Query: 308 --AAPRLKLVSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVR 367
               P+L L    E  AL     +++P +  G C+ +Y+P +++ L+KQ+   V     R
Sbjct: 236 SRVTPQLFLSPKVE-HALGDNTALRIPRFPTGGCLMDYVPQVQDFLQKQIDHIVEGYQRR 295

Query: 368 RGFIEA-LDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQ 427
           R ++ A +  F G  LE D       +++     F F++H  + ++FP+  P    QS  
Sbjct: 296 REYVAAFISRFGGSVLEYDAESFTKLSLVLEWNEFFFVLHIELPSRFPQDMPVFTFQSCY 355

Query: 428 HFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEFLADEALSFKR 436
           H +         +   YP+SPRW   +MA R   F+ D    FK+
Sbjct: 356 HLSKTNGEPYVSVQKSYPYSPRWTGEEMAHRAKLFILDFIPQFKK 375

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy Swiss-Prot
Match: Q5ZML0 (BRISC and BRCA1-A complex member 2 OS=Gallus gallus OX=9031 GN=BABAM2 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.6e-21
Identity = 96/335 (28.66%), Postives = 145/335 (43.28%), Query Frame = 0


Query: 128 DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 187
           DRF L IPY  E +KWDI+++A  P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNAHYPDLPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 188 LRDWNSKDPSRLTSLLQELSLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSR 247
           L  WN  +P  L  +++EL             +Y  +Q  R+   E  RL FE  T+L  
Sbjct: 114 LASWNPSNPECLLLVVKELV-----------QQYHQFQCSRLR--ESSRLMFEYQTLLEE 173

Query: 248 ----EGIEMHLSS-----------------------------------GVEKVLYPVVRK 307
               E +E++                                      G +  L  V  +
Sbjct: 174 PQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFE 233

Query: 308 YA-STPAAPRLKLVSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSL 367
            A +T   P+L L    E  AL     + +P++  G C+ +Y+P + + L  +V   +  
Sbjct: 234 DAEATQVFPKLYLSPRIE-HALGGSSALHIPAFPGGGCLIDYVPQVCQLLTNKVQYVIQG 293

Query: 368 INVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVL 422
            + RR +I A  S FG   +E D       T++     F FLVH  +   FP+ QP+L  
Sbjct: 294 YHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLYFPRDQPTLTF 353

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy Swiss-Prot
Match: Q6SP92 (BRISC and BRCA1-A complex member 2 OS=Mesocricetus auratus OX=10036 GN=Babam2 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.6e-21
Identity = 92/322 (28.57%), Postives = 141/322 (43.79%), Query Frame = 0


Query: 128 DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 187
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGESLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 188 LRDWNSKDPSRLTSLLQEL----------SLNSKATLLF----------LRDRYASYQRK 247
           L  WN  DP  L  +++EL           L   + L+F            +    Y  K
Sbjct: 114 LASWNPSDPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGK 173

Query: 248 RVEGVEDERLKFELCTMLSREGIEMHLSSGVEK-------VLYPVVRKYASTPAAPRLKL 307
           +     +   +F L   +    I  +L   V +       +L        +T   P+L L
Sbjct: 174 KNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYL 233

Query: 308 VSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDS 367
               E  AL     + +P++  G C+ +Y+P +   L  +V   +   + RR +I A  S
Sbjct: 234 SPRIE-HALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLS 293

Query: 368 FFGR-PLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPI 422
            FG   +E D       T++     F FLVH  +   FP+ QP+L  QS  HF + G  +
Sbjct: 294 HFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSG-QL 353

[Close]

BLAST of Cp4.1LG02g08070 vs. NCBI nr
Match: XP_023525358.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 681 bits (1757), Expect = 1.23e-244
Identity = 346/390 (88.72%), Postives = 346/390 (88.72%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEEVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. NCBI nr
Match: KAG6608599.1 (BRISC and BRCA1-A complex member 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 680 bits (1754), Expect = 3.53e-244
Identity = 345/390 (88.46%), Postives = 346/390 (88.72%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHL+SGVEK      
Sbjct: 121 -----------RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLNSGVEKPEDVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. NCBI nr
Match: XP_022940533.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 678 bits (1750), Expect = 1.44e-243
Identity = 345/390 (88.46%), Postives = 345/390 (88.46%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEAL SFFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALGSFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. NCBI nr
Match: XP_022981789.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 673 bits (1736), Expect = 1.94e-241
Identity = 341/390 (87.44%), Postives = 345/390 (88.46%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           YDAESPFSAPDI+FGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIVFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVL+AVSLINVRR FIEAL+SFFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLDAVSLINVRRRFIEALNSFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. NCBI nr
Match: XP_008466484.1 (PREDICTED: BRCA1-A complex subunit BRE [Cucumis melo] >TYK31486.1 BRCA1-A complex subunit BRE [Cucumis melo var. makuwa])

HSP 1 Score: 645 bits (1663), Expect = 2.53e-230
Identity = 325/390 (83.33%), Postives = 339/390 (86.92%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYA+TP+APRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLI+VRRGFIEALD+FFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLIDVRRGFIEALDNFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVI ASGVFTFLVH L+STQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVITASGVFTFLVHILISTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy TrEMBL
Match: A0A6J1FPK2 (BRCA1-A complex subunit BRE OS=Cucurbita moschata OX=3662 GN=LOC111446103 PE=4 SV=1)

HSP 1 Score: 678 bits (1750), Expect = 6.95e-244
Identity = 345/390 (88.46%), Postives = 345/390 (88.46%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEAL SFFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALGSFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy TrEMBL
Match: A0A6J1J2U1 (BRCA1-A complex subunit BRE OS=Cucurbita maxima OX=3661 GN=LOC111480831 PE=4 SV=1)

HSP 1 Score: 673 bits (1736), Expect = 9.41e-242
Identity = 341/390 (87.44%), Postives = 345/390 (88.46%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           YDAESPFSAPDI+FGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIVFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVL+AVSLINVRR FIEAL+SFFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLDAVSLINVRRRFIEALNSFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy TrEMBL
Match: A0A5D3E738 (BRCA1-A complex subunit BRE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008020 PE=4 SV=1)

HSP 1 Score: 645 bits (1663), Expect = 1.23e-230
Identity = 325/390 (83.33%), Postives = 339/390 (86.92%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYA+TP+APRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLI+VRRGFIEALD+FFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLIDVRRGFIEALDNFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVI ASGVFTFLVH L+STQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVITASGVFTFLVHILISTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy TrEMBL
Match: A0A1S3CSN0 (BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1)

HSP 1 Score: 645 bits (1663), Expect = 1.23e-230
Identity = 325/390 (83.33%), Postives = 339/390 (86.92%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYA+TP+APRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLI+VRRGFIEALD+FFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLIDVRRGFIEALDNFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVI ASGVFTFLVH L+STQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVITASGVFTFLVHILISTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

[Close]

BLAST of Cp4.1LG02g08070 vs. ExPASy TrEMBL
Match: A0A5A7VCG0 (BRCA1-A complex subunit BRE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001120 PE=4 SV=1)

HSP 1 Score: 643 bits (1659), Expect = 4.98e-230
Identity = 325/390 (83.33%), Postives = 338/390 (86.67%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIKDRFTLVMPYCLEFVKWDIM 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 206
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 207 SLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK------ 266
                      RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEK      
Sbjct: 121 -----------RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKF 180

Query: 267 ---------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLSIE 326
                                      VLYPVVRKYA+TP+APRLKLVSTSELKALLSIE
Sbjct: 181 AVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIE 240

Query: 327 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFC 386
           DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLI+VRRGFIEALD+FFGRPLEADPVFC
Sbjct: 241 DIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLIDVRRGFIEALDNFFGRPLEADPVFC 300

Query: 387 RTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 443
           RTATVI ASGVFTFLVH L+STQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW
Sbjct: 301 RTATVITASGVFTFLVHILISTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRW 360

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BLAST of Cp4.1LG02g08070 vs. TAIR 10
Match: AT5G42470.1 (CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 401.7 bits (1031), Expect = 7.4e-112
Identity = 199/392 (50.77%), Postives = 270/392 (68.88%), Query Frame = 0


Query: 87  MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 146
           M+ +  PPLIA Q++YL NH P  + I N+WSG++  P I+DRFTLVIPYCLE +KWD++
Sbjct: 1   MAFEEFPPLIADQLHYLLNHSPDSIKIANVWSGNKINPKILDRFTLVIPYCLETIKWDVI 60

Query: 147 YDAESPFSAPDIMFGPEDENFHPF-TSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQE 206
           Y++E     PD +FGP+DE+F P   S +   +    SL+ +L +W+ +D +RL  ++Q 
Sbjct: 61  YNSEYAMDPPDFVFGPDDEDFVPCKCSAIAPDDDQISSLEKALSEWDHEDSTRLLVIIQG 120

Query: 207 LSLNSKATLLFLRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEK----- 266
                      LRD+Y +YQR+RV  V+D+R+KFE+ T+L+R+GIEM ++SGV+K     
Sbjct: 121 -----------LRDQYVAYQRRRVGQVDDDRVKFEISTVLTRKGIEMQMASGVDKPEEVK 180

Query: 267 -----------------------------VLYPVVRKYASTPAAPRLKLVSTSELKALLS 326
                                        V+YP++RKY + P+APRLKLVS  +LK+L S
Sbjct: 181 FAVPLVMDMNINKMVVGCPWKHQQKIYLQVVYPILRKYEAAPSAPRLKLVSYYDLKSLFS 240

Query: 327 IEDIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPV 386
           +ED+KL  W+DGMC+AEYLPHLEE+LE+Q+ EAV+ I++RR FIEAL    GRPLEADP 
Sbjct: 241 VEDVKLSPWMDGMCLAEYLPHLEETLERQIHEAVAAIDLRRSFIEALSLNLGRPLEADPT 300

Query: 387 FCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSP 444
           FCR AT + ASG FTF+VHF  STQFPK+QP+L+LQS QH N    P+KS L+T+YPWSP
Sbjct: 301 FCRKATFLNASGQFTFMVHFFFSTQFPKQQPTLMLQSCQHLNQSSVPVKSNLLTEYPWSP 360

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g08070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q568D5	6.9e-22	30.12	BRISC and BRCA1-A complex member 2 OS=Danio rerio OX=7955 GN=babam2 PE=2 SV=1	[more]
Q6DJ78	6.9e-22	29.19	BRISC and BRCA1-A complex member 2 OS=Xenopus tropicalis OX=8364 GN=babam2 PE=2 ...	[more]
B6NXD5	2.0e-21	24.35	BRISC and BRCA1-A complex member 2 OS=Branchiostoma floridae OX=7739 GN=BABAM2 P...	[more]
Q5ZML0	7.6e-21	28.66	BRISC and BRCA1-A complex member 2 OS=Gallus gallus OX=9031 GN=BABAM2 PE=2 SV=1	[more]
Q6SP92	7.6e-21	28.57	BRISC and BRCA1-A complex member 2 OS=Mesocricetus auratus OX=10036 GN=Babam2 PE...	[more]

BLAST of Cp4.1LG02g08070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525358.1	1.23e-244	88.72	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6608599.1	3.53e-244	88.46	BRISC and BRCA1-A complex member 2, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022940533.1	1.44e-243	88.46	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata]	[more]
XP_022981789.1	1.94e-241	87.44	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita maxima]	[more]
XP_008466484.1	2.53e-230	83.33	PREDICTED: BRCA1-A complex subunit BRE [Cucumis melo] >TYK31486.1 BRCA1-A comple...	[more]

BLAST of Cp4.1LG02g08070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPK2	6.95e-244	88.46	BRCA1-A complex subunit BRE OS=Cucurbita moschata OX=3662 GN=LOC111446103 PE=4 S...	[more]
A0A6J1J2U1	9.41e-242	87.44	BRCA1-A complex subunit BRE OS=Cucurbita maxima OX=3661 GN=LOC111480831 PE=4 SV=...	[more]
A0A5D3E738	1.23e-230	83.33	BRCA1-A complex subunit BRE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CSN0	1.23e-230	83.33	BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1	[more]
A0A5A7VCG0	4.98e-230	83.33	BRCA1-A complex subunit BRE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Cp4.1LG02g08070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42470.1	7.4e-112	50.77	CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010358	BRCA1-A complex subunit BRE	PFAM	PF06113	BRE	coord: 276..392 e-value: 7.1E-12 score: 44.8 coord: 113..250 e-value: 8.9E-14 score: 51.0
IPR010358	BRCA1-A complex subunit BRE	PANTHER	PTHR15189	BRISC AND BRCA1-A COMPLEX MEMBER 2	coord: 88..258 coord: 260..442

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g08070.1	Cp4.1LG02g08070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane