Cp4.1LG02g07510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g07510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description50S ribosomal protein L31
LocationCp4.1LG02: 567715 .. 568201 (-)
RNA-Seq ExpressionCp4.1LG02g07510
SyntenyCp4.1LG02g07510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTCAACCTAACAAATTCCTTCCTTCAACGGCCATTTTCTCCGGCTATCGCACCGCCGAAGAACAAGGTATTTTCCCCGTTTTCTCACTTCTCAATTTTCCGGAGATGGTGACTGCTCATCTTTATTGTCCTAAATTTCTGTGTAATTTCCAGGAATTAGGAGCGAGACGCTACCGGCCGGTGGTGACCTGCCGTAAAAAGGATATTCATCACCAATTCTACGAGGACGTGTAGGTTTATTGCAACGGAGAACTGGTGATGACGACCGGTGGGACTCAGAAGAGTACTCCGTGGATGTGTGGTCGGGAAATCACCCGTTCTATTTGGGCAGCCGCTCCGCCCTGCTAGTCGACGCTGATCAGGTGGAGAAATTCCGCAAGAAATTTGGAGAGCTGTCGCAGTTGATGGAGATTCCTGTCCTTAAAGGTGAAATCGTTCTGCCTACAAAACGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAG

mRNA sequence

ATGGCGCTCAACCTAACAAATTCCTTCCTTCAACGGCCATTTTCTCCGGCTATCGCACCGCCGAAGAACAAGGAATTAGGAGCGAGACGCTACCGGCCGGTGGTGACCTGCCGTAAAAAGGATATTCATCACCAATTCTACGAGGACGTCCGCTCCGCCCTGCTAGTCGACGCTGATCAGGTGGAGAAATTCCGCAAGAAATTTGGAGAGCTGTCGCAGTTGATGGAGATTCCTGTCCTTAAAGGTGAAATCGTTCTGCCTACAAAACGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAG

Coding sequence (CDS)

ATGGCGCTCAACCTAACAAATTCCTTCCTTCAACGGCCATTTTCTCCGGCTATCGCACCGCCGAAGAACAAGGAATTAGGAGCGAGACGCTACCGGCCGGTGGTGACCTGCCGTAAAAAGGATATTCATCACCAATTCTACGAGGACGTCCGCTCCGCCCTGCTAGTCGACGCTGATCAGGTGGAGAAATTCCGCAAGAAATTTGGAGAGCTGTCGCAGTTGATGGAGATTCCTGTCCTTAAAGGTGAAATCGTTCTGCCTACAAAACGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAG

Protein sequence

MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDVRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
Homology
BLAST of Cp4.1LG02g07510 vs. ExPASy Swiss-Prot
Match: Q9FWS4 (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-18
Identity = 60/144 (41.67%), Postives = 76/144 (52.78%), Query Frame = 0

Query: 1   MALNLTNSFLQ--------RPFSPAIAPPKNKELGARRYRPVV---TCRKKDIHHQFYED 60
           MA++L NSFLQ        +   P +A  K  +   RR    V   TCRKK++H +F+ED
Sbjct: 1   MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60

Query: 61  V----------------------------------RSALLVDADQVEKFRKKFGELSQLM 100
                                              RSAL+VDADQVEKFRK+F  LS++M
Sbjct: 61  AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120

BLAST of Cp4.1LG02g07510 vs. ExPASy Swiss-Prot
Match: P82249 (50S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-16
Identity = 60/135 (44.44%), Postives = 73/135 (54.07%), Query Frame = 0

Query: 1   MALNLTNSFLQR-PFSP-AIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV-------- 60
           M L L+N FL + P +P  +  PK     +   RP  +CRK DIH +F ED         
Sbjct: 1   MVLTLSNQFLAKIPATPKTLTLPKT---SSSTLRPQWSCRKSDIHPEFREDAKVYCNGEL 60

Query: 61  --------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 100
                                     RSALL+DADQVEKFRKK+GEL+Q+MEIPVLKGEI
Sbjct: 61  VMTTGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEI 120

BLAST of Cp4.1LG02g07510 vs. NCBI nr
Match: KAG6608549.1 (50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (443), Expect = 3.23e-54
Identity = 97/133 (72.93%), Postives = 97/133 (72.93%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIH QFYED           
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

BLAST of Cp4.1LG02g07510 vs. NCBI nr
Match: XP_023523361.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175 bits (443), Expect = 1.43e-53
Identity = 97/133 (72.93%), Postives = 97/133 (72.93%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIH QFYED           
Sbjct: 48  MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHPQFYEDAKVYCNGELVM 107

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 108 TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 167

BLAST of Cp4.1LG02g07510 vs. NCBI nr
Match: XP_022940973.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata] >XP_022940974.1 50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 172 bits (435), Expect = 5.35e-53
Identity = 96/133 (72.18%), Postives = 96/133 (72.18%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQRPFSPAIAPPKNKELGARRYR VVTCRKKDIH QFYED           
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

BLAST of Cp4.1LG02g07510 vs. NCBI nr
Match: XP_022981730.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 171 bits (434), Expect = 2.77e-52
Identity = 95/133 (71.43%), Postives = 96/133 (72.18%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQR FSPAIAPPKNKELGARRYRPVVTCRKKD+H QFYED           
Sbjct: 42  MALNLTNSFLQRSFSPAIAPPKNKELGARRYRPVVTCRKKDVHPQFYEDAKVYCNGELVM 101

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 102 TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 161

BLAST of Cp4.1LG02g07510 vs. NCBI nr
Match: XP_022936208.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 157 bits (396), Expect = 4.68e-47
Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQRP SP +APPK KE GAR +R VVTCRKKD+H QF+ED           
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

BLAST of Cp4.1LG02g07510 vs. ExPASy TrEMBL
Match: A0A6J1FQS6 (50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111446395 PE=3 SV=1)

HSP 1 Score: 172 bits (435), Expect = 2.59e-53
Identity = 96/133 (72.18%), Postives = 96/133 (72.18%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQRPFSPAIAPPKNKELGARRYR VVTCRKKDIH QFYED           
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

BLAST of Cp4.1LG02g07510 vs. ExPASy TrEMBL
Match: A0A6J1J0F9 (50S ribosomal protein L31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480796 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 1.34e-52
Identity = 95/133 (71.43%), Postives = 96/133 (72.18%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQR FSPAIAPPKNKELGARRYRPVVTCRKKD+H QFYED           
Sbjct: 42  MALNLTNSFLQRSFSPAIAPPKNKELGARRYRPVVTCRKKDVHPQFYEDAKVYCNGELVM 101

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 102 TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 161

BLAST of Cp4.1LG02g07510 vs. ExPASy TrEMBL
Match: A0A6J1FCM8 (50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111442881 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 2.26e-47
Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQRP SP +APPK KE GAR +R VVTCRKKD+H QF+ED           
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

BLAST of Cp4.1LG02g07510 vs. ExPASy TrEMBL
Match: A0A6J1IKY2 (50S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111475090 PE=3 SV=1)

HSP 1 Score: 156 bits (395), Expect = 3.21e-47
Identity = 86/133 (64.66%), Postives = 91/133 (68.42%), Query Frame = 0

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV---------- 60
           MALNLTNSFLQRP SP +APPK KE GAR +R VVTCRKKD+H QF+ED           
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  ------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 99
                                   RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI+L
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIIL 120

BLAST of Cp4.1LG02g07510 vs. ExPASy TrEMBL
Match: A0A0A0LDC9 (50S ribosomal protein L31 OS=Cucumis sativus OX=3659 GN=Csa_3G859720 PE=3 SV=1)

HSP 1 Score: 148 bits (374), Expect = 5.23e-44
Identity = 87/135 (64.44%), Postives = 91/135 (67.41%), Query Frame = 0

Query: 1   MALNLTNSFLQ--RPFSPAIAPPKNKELGARRYRPVVTCRKKDIHHQFYEDV-------- 60
           MALNLTNSFLQ  RP SPA+APPK KE GAR YRPVVTCRKKD+H QFYED         
Sbjct: 1   MALNLTNSFLQLQRPISPAVAPPKRKESGARSYRPVVTCRKKDLHPQFYEDAKVYCNGEL 60

Query: 61  --------------------------RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 99
                                     RSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI
Sbjct: 61  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 120

BLAST of Cp4.1LG02g07510 vs. TAIR 10
Match: AT1G75350.1 (Ribosomal protein L31 )

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-19
Identity = 60/144 (41.67%), Postives = 76/144 (52.78%), Query Frame = 0

Query: 1   MALNLTNSFLQ--------RPFSPAIAPPKNKELGARRYRPVV---TCRKKDIHHQFYED 60
           MA++L NSFLQ        +   P +A  K  +   RR    V   TCRKK++H +F+ED
Sbjct: 1   MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60

Query: 61  V----------------------------------RSALLVDADQVEKFRKKFGELSQLM 100
                                              RSAL+VDADQVEKFRK+F  LS++M
Sbjct: 61  AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FWS45.1e-1841.6750S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
P822491.3e-1644.4450S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 P... [more]
Match NameE-valueIdentityDescription
KAG6608549.13.23e-5472.9350S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_023523361.11.43e-5372.9350S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022940973.15.35e-5372.1850S ribosomal protein L31, chloroplastic-like [Cucurbita moschata] >XP_022940974... [more]
XP_022981730.12.77e-5271.4350S ribosomal protein L31, chloroplastic-like [Cucurbita maxima][more]
XP_022936208.14.68e-4765.4150S ribosomal protein L31, chloroplastic-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1FQS62.59e-5372.1850S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111446395 PE=3 SV=... [more]
A0A6J1J0F91.34e-5271.4350S ribosomal protein L31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1FCM82.26e-4765.4150S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111442881 PE=3 SV=... [more]
A0A6J1IKY23.21e-4764.6650S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111475090 PE=3 SV=1[more]
A0A0A0LDC95.23e-4464.4450S ribosomal protein L31 OS=Cucumis sativus OX=3659 GN=Csa_3G859720 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G75350.13.7e-1941.67Ribosomal protein L31 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33280:SF550S RIBOSOMAL PROTEIN L31coord: 44..99
IPR002150Ribosomal protein L31PANTHERPTHR3328050S RIBOSOMAL PROTEIN L31, CHLOROPLASTICcoord: 44..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g07510.1Cp4.1LG02g07510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome