Cp4.1LG02g07430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g07430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein RADIALIS-like 3
Location	Cp4.1LG02: 623182 .. 624172 (-)
RNA-Seq Expression	Cp4.1LG02g07430
Synteny	Cp4.1LG02g07430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACGGGTAAAAGGCAAATAACGTTGAACCCACTTGCGCCATATTCCGTCTCTGTTTCTCAAGTATTTAAGCATCAGAAATGGCAGCCAGTTCTGTCATAAAATTTCAACCACTGCGATACGATGGCCTCTGGATCGAAATGGACGGCGAAACAGAACAAAATGTTCGAAAATGCTTTAGCCATCTACGACAGAGACACGCCGGAGCGGTGGAACAACCTCGCCAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAACGGCACTACGAGAATCTCGTTGAAGACGTCAACAAGATCGAAAGTGGCCAAGTTCCTTTCCCCGCTTACACAAAATCCGAACCCGCCGGCACAGGATTTCGCTTTGTTGACGAAGAACAGCGGTAACCAAAAAAACCCTTTTCTCCTTTTTCCTTTATTATTATTATTATTATTTTCTTTTTTTGGTAATGTATTTTAAAACTCAAATAAAATCATTACTATGTAAATACATTTGGGTTAAATTATAATGAACTAAATCTTTAATTCAAATTTATTTAATAATAATAATAATAGTTTTGCTACCACATTTTCAAAATTTATACAATTAAAAACTAATTTTAAATTTTATTGAAAATATTAAGATCAATTTTAATTCAAAATACAATCATTTAAATATATATTTTAAGAATATAATTTAAATTTTATAAATTTAAAAAAGGTTTTGTTTGGGATTAATGCAGGATGAGGAGTCTACAGTTGCATTAAGTATGAATTTGGGATGAATGTTGAACACAGGCAGGCTTTAGTTACTGTGAAGGCCAAATGTAGCTACTTTTCTTCAGCCGTATTTACTGTATTTTCTAGTCTTTGTCCCTTTCTCATGAGCTGTCATCCCAAATTGTTCTATATTTAATGAATACATTACTGGTATGAGTTATTAGTGTACTTCCATAATTTATTACTCACATAATTAATTATTTTAATATTTTGAGGTTAAATTAATAAAAACA

mRNA sequence

CAACGGGTAAAAGGCAAATAACGTTGAACCCACTTGCGCCATATTCCGTCTCTGTTTCTCAAGTATTTAAGCATCAGAAATGGCAGCCAGTTCTGTCATAAAATTTCAACCACTGCGATACGATGGCCTCTGGATCGAAATGGACGGCGAAACAGAACAAAATGTTCGAAAATGCTTTAGCCATCTACGACAGAGACACGCCGGAGCGGTGGAACAACCTCGCCAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAACGGCACTACGAGAATCTCGTTGAAGACGTCAACAAGATCGAAAGTGGCCAAGTTCCTTTCCCCGCTTACACAAAATCCGAACCCGCCGGCACAGGATTTCGCTTTGTTGACGAAGAACAGCGGATGAGGAGTCTACAGTTGCATTAAGTATGAATTTGGGATGAATGTTGAACACAGGCAGGCTTTAGTTACTGTGAAGGCCAAATGTAGCTACTTTTCTTCAGCCGTATTTACTGTATTTTCTAGTCTTTGTCCCTTTCTCATGAGCTGTCATCCCAAATTGTTCTATATTTAATGAATACATTACTGGTATGAGTTATTAGTGTACTTCCATAATTTATTACTCACATAATTAATTATTTTAATATTTTGAGGTTAAATTAATAAAAACA

Coding sequence (CDS)

ATGGCCTCTGGATCGAAATGGACGGCGAAACAGAACAAAATGTTCGAAAATGCTTTAGCCATCTACGACAGAGACACGCCGGAGCGGTGGAACAACCTCGCCAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAACGGCACTACGAGAATCTCGTTGAAGACGTCAACAAGATCGAAAGTGGCCAAGTTCCTTTCCCCGCTTACACAAAATCCGAACCCGCCGGCACAGGATTTCGCTTTGTTGACGAAGAACAGCGGATGAGGAGTCTACAGTTGCATTAA

Protein sequence

MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

Homology

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-25
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 3  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESG 62
          S   WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE+G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL 94
           VPFP Y  S     G R   EE+RMR+++L
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.0e-25
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1   MASGS-------KWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLV 60
           MASGS        WT KQNK FE ALA+YD+DTP+RW+N+ARAVGGKT EE KR Y+ LV
Sbjct: 1   MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLV 60

Query: 61  EDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL 94
            D+  IE+G VPFP Y  +       R  DEE+RMRS++L
Sbjct: 61  RDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 3  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESG 62
          SG  W+AK+NK FE ALA+YD+DTP+RW N+ARAV G+T EEVK+HYE LVED+  IESG
Sbjct: 7  SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66

Query: 63 QVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL 94
          +VPFP Y       TG     +E+R R+L++
Sbjct: 67 KVPFPNYRT-----TGGNMKTDEKRFRNLKI 92

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-22
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          M+S S WT+KQNKMFE ALA+YD+DTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE
Sbjct: 6  MSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIE 65

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDE 85
             VP P Y K+   G+  R +D+
Sbjct: 66 QDLVPLPKY-KTVDVGSKSRGIDD 88

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-22
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          M+S + WT K+NK+FE ALA YD+DTP+RW+N+ARAVGGK+AEEV+RHYE L+ DVN IE
Sbjct: 6  MSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIE 65

Query: 61 SGQVPFPAY 70
          SG+ P P Y
Sbjct: 66 SGRYPHPNY 74

[Close]

BLAST of Cp4.1LG02g07430 vs. NCBI nr
Match: XP_022941099.1 (protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo] >KAG6608538.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037861.1 Protein RADIALIS-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196 bits (497), Expect = 4.42e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
          SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Cp4.1LG02g07430 vs. NCBI nr
Match: XP_022981878.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 193 bits (490), Expect = 5.18e-62
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
          SGQVPFPAYTKSEPAG GFRFVDEEQRMRSLQLH
Sbjct: 61 SGQVPFPAYTKSEPAGGGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Cp4.1LG02g07430 vs. NCBI nr
Match: XP_038905673.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 165 bits (417), Expect = 7.12e-51
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MGSGSHWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
          +GQVPFP Y +S PA  GF FVDEEQRMRSL+LH
Sbjct: 61 TGQVPFPNYRRSGPAVRGFCFVDEEQRMRSLRLH 94

[Close]

BLAST of Cp4.1LG02g07430 vs. NCBI nr
Match: XP_004147867.1 (protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_001999 [Cucumis sativus])

HSP 1 Score: 163 bits (412), Expect = 4.12e-50
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
          +GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]

BLAST of Cp4.1LG02g07430 vs. NCBI nr
Match: XP_022138113.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 154 bits (390), Expect = 2.09e-46
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 2   ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIES 61
           + GS WTAKQNK+FENALA+YD+DTP+RW+NLARAVGGKTAEEVKRHYE LV+DVNKIE+
Sbjct: 28  SGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKIET 87

Query: 62  GQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
           GQVPFP Y KS     GF F+DEE+RMRSL+LH
Sbjct: 88  GQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy TrEMBL
Match: A0A6J1FM85 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1)

HSP 1 Score: 196 bits (497), Expect = 2.14e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
          SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy TrEMBL
Match: A0A6J1J3A1 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111480889 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 2.51e-62
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
          SGQVPFPAYTKSEPAG GFRFVDEEQRMRSLQLH
Sbjct: 61 SGQVPFPAYTKSEPAGGGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy TrEMBL
Match: A0A0A0LGK8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 2.00e-50
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
          +GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy TrEMBL
Match: A0A6J1CC55 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 1.01e-46
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 2   ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIES 61
           + GS WTAKQNK+FENALA+YD+DTP+RW+NLARAVGGKTAEEVKRHYE LV+DVNKIE+
Sbjct: 28  SGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKIET 87

Query: 62  GQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94
           GQVPFP Y KS     GF F+DEE+RMRSL+LH
Sbjct: 88  GQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]

BLAST of Cp4.1LG02g07430 vs. ExPASy TrEMBL
Match: A0A5D3D7Z0 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00440 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 6.09e-46
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQR 87
          +GQVPFP Y +S PA  GF F+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Cp4.1LG02g07430 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-26
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 3  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESG 62
          S   WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE+G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL 94
           VPFP Y  S     G R   EE+RMR+++L
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]

BLAST of Cp4.1LG02g07430 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-26
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1   MASGS-------KWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLV 60
           MASGS        WT KQNK FE ALA+YD+DTP+RW+N+ARAVGGKT EE KR Y+ LV
Sbjct: 1   MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLV 60

Query: 61  EDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL 94
            D+  IE+G VPFP Y  +       R  DEE+RMRS++L
Sbjct: 61  RDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of Cp4.1LG02g07430 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60
          M+S S WT+KQNKMFE ALA+YD+DTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE
Sbjct: 6  MSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIE 65

Query: 61 SGQVPFPAYTKSEPAGTGFRFVDE 85
             VP P Y K+   G+  R +D+
Sbjct: 66 QDLVPLPKY-KTVDVGSKSRGIDD 88

[Close]

BLAST of Cp4.1LG02g07430 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 104.4 bits (259), Expect = 5.2e-23
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 2  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIES 61
          +S S WT  QNKMFE ALA+YD+DTP+RW+N+A+AVGGKT EEVKRHY+ LVED+  IE+
Sbjct: 7  SSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

Query: 62 GQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL 94
          G+VP P Y   E         D  ++M++L++
Sbjct: 67 GRVPLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]

BLAST of Cp4.1LG02g07430 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 2  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIES 61
          +S S WT  QNKMFE ALA+YD+DTP+RW+N+A+AVGGKT EEVKRHY+ LVED+  IE+
Sbjct: 7  SSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

Query: 62 GQVPFPAYTKSE 74
          G+VP P Y   E
Sbjct: 67 GRVPLPNYKTFE 78

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g07430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	1.4e-25	61.54	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	7.0e-25	57.00	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	3.9e-23	57.14	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q8GW75	1.9e-22	59.52	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q6NNN0	3.3e-22	66.67	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of Cp4.1LG02g07430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941099.1	4.42e-63	100.00	protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-li...	[more]
XP_022981878.1	5.18e-62	98.94	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_038905673.1	7.12e-51	84.04	protein RADIALIS-like 3 [Benincasa hispida]	[more]
XP_004147867.1	4.12e-50	81.91	protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_0...	[more]
XP_022138113.1	2.09e-46	76.34	protein RADIALIS-like 3 [Momordica charantia]	[more]

BLAST of Cp4.1LG02g07430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FM85	2.14e-63	100.00	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1	[more]
A0A6J1J3A1	2.51e-62	98.94	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111480889 PE=4 SV=1	[more]
A0A0A0LGK8	2.00e-50	81.91	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 S...	[more]
A0A6J1CC55	1.01e-46	76.34	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1	[more]
A0A5D3D7Z0	6.09e-46	81.61	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cp4.1LG02g07430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	1.0e-26	61.54	RAD-like 1	[more]
AT2G21650.1	5.0e-26	57.00	Homeodomain-like superfamily protein	[more]
AT1G19510.1	1.4e-23	59.52	RAD-like 5	[more]
AT1G75250.2	5.2e-23	54.35	RAD-like 6	[more]
AT1G75250.1	1.5e-22	65.28	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 3..55 e-value: 3.4E-8 score: 43.2
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 1..53 score: 6.527576
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 6..53 e-value: 1.22377E-7 score: 42.1774
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 5..52 e-value: 1.0E-5 score: 25.6
None	No IPR available	GENE3D	1.10.10.60		coord: 1..66 e-value: 1.0E-24 score: 88.1
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..94
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..94
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 2..57 score: 9.643165
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 6..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g07430.1	Cp4.1LG02g07430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003700	DNA-binding transcription factor activity