Cp4.1LG02g06350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g06350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG02: 1216870 .. 1217388 (-)
RNA-Seq ExpressionCp4.1LG02g06350
SyntenyCp4.1LG02g06350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGTTCGAGTTCGAGTTCGAGTTCTCTTCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGTTGCAATCGAGTTCCAGCCCTAGCGTAAGCACGTTCGAGAAATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGGGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTGAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGAGAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGCCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCGTCCCCGTGA

mRNA sequence

ATGGCGAGTTCGAGTTCGAGTTCGAGTTCTCTTCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGTTGCAATCGAGTTCCAGCCCTAGCGTAAGCACGTTCGAGAAATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGGGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTGAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGAGAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGCCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCGTCCCCGTGA

Coding sequence (CDS)

ATGGCGAGTTCGAGTTCGAGTTCGAGTTCTCTTCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGTTGCAATCGAGTTCCAGCCCTAGCGTAAGCACGTTCGAGAAATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGGGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTGAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGAGAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGCCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCGTCCCCGTGA

Protein sequence

MASSSSSSSSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCCASSP
Homology
BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match: KAG6608406.1 (hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 331 bits (849), Expect = 2.82e-114
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0

Query: 5   SSSSSSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRS 64
           SSSSSS PLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSP+VSTFE+SALKLPSPPYRS
Sbjct: 3   SSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFERSALKLPSPPYRS 62

Query: 65  ESARLPDDYGEAIPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFV 124
           ESARLPDDYGEAIPCSSPRAKSARMAKEHLWL+AYSDDFGSSFGFGCCKRDGLKE DPFV
Sbjct: 63  ESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFV 122

Query: 125 EAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCCASSP 172
           EAYKKCTNGPSKNRRPI GGSATNGVKRPGIRRRLLFSLSRKCCASSP
Sbjct: 123 EAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP 170

BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match: KAG7037747.1 (hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329 bits (844), Expect = 1.63e-113
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0

Query: 5   SSSSSSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRS 64
           SSSSSS PLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSP+VSTFE SALKLPSPPYRS
Sbjct: 3   SSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRS 62

Query: 65  ESARLPDDYGEAIPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFV 124
           ESARLPDDYGEAIPCSSPRAKSARMAKEHLWL+AYSDDFGSSFGFGCCKRDGLKE DPFV
Sbjct: 63  ESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFV 122

Query: 125 EAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCCASSP 172
           EAYKKCTNGPSKNRRPI GGSATNGVKRPGIRRRLLFSLSRKCCASSP
Sbjct: 123 EAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP 170

BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match: KAA0064469.1 (hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK20119.1 hypothetical protein E5676_scaffold134G002440 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 2.29e-66
Identity = 110/149 (73.83%), Postives = 115/149 (77.18%), Query Frame = 0

Query: 25  NVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIPCSSPR- 84
           NVPFSWEAKPGVPK QS  SPS S FE S LKLPSPP RSESARL  DY   I  S PR 
Sbjct: 2   NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

Query: 85  -AKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSKNRRPIA 144
            A+SARMAK+ LWLEAYSD   SSFGFGCCK D  K+ DPFVEAYKKCTN  S + R I 
Sbjct: 62  RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121

Query: 145 GGSATNGVKRPGIRRRLLFSLSRKCCASS 171
           GGSATNGVKRP I RR+LFSLSRKCCASS
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKCCASS 150

BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match: XP_004141298.1 (uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetical protein Csa_012140 [Cucumis sativus])

HSP 1 Score: 197 bits (501), Expect = 2.12e-61
Identity = 109/164 (66.46%), Postives = 118/164 (71.95%), Query Frame = 0

Query: 9   SSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSA--LKLPSPPYRSES 68
           SS P++ DFE L T+TNVPFSWEAKPGVPK QS  SP+ S FE  A  LKLPSPP RSES
Sbjct: 3   SSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRSES 62

Query: 69  ARLPDDYGEAIPCSSPR--AKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFV 128
           ARL  DY   I  S PR  A+SARMAK+ LWLEAYSD   SSFGFGCCK D  K+ DPFV
Sbjct: 63  ARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFV 122

Query: 129 EAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCC 168
           EAYKKC     +N R I G SATNG KRP I RR+LFSLSR  C
Sbjct: 123 EAYKKC-----RNSRSINGASATNGAKRPNIIRRVLFSLSRFWC 161

BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match: KAG5230775.1 (Stimulated by retinoic acid protein [Salix suchowensis])

HSP 1 Score: 63.9 bits (154), Expect = 3.39e-09
Identity = 53/151 (35.10%), Postives = 72/151 (47.68%), Query Frame = 0

Query: 18  ELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLP-DDYGEA 77
           +++Q++ NVPFSWE KPGVPK+         T+    LKLP PP  S+  R P DD  +A
Sbjct: 5   DVVQSKANVPFSWEQKPGVPKVTHQEVRPADTWHF-RLKLPPPPRASKCTRFPSDDNLQA 64

Query: 78  IPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLK-ERDPFVEAYKKCTNGPS 137
           +  SS                       SSF      + G++ + DPF+ AYKKCT  P 
Sbjct: 65  LSTSS-----------------------SSF------KKGIRIQEDPFLRAYKKCTRSPI 123

Query: 138 KNRRPIAGGSATNGVKRPGIRRRLLFSLSRK 166
            N R    G A  G+ +  +R+    SLS K
Sbjct: 125 -NGRLTRDGKADRGMPKT-VRKNAGSSLSCK 123

BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match: A0A5D3D9E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002440 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 1.11e-66
Identity = 110/149 (73.83%), Postives = 115/149 (77.18%), Query Frame = 0

Query: 25  NVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIPCSSPR- 84
           NVPFSWEAKPGVPK QS  SPS S FE S LKLPSPP RSESARL  DY   I  S PR 
Sbjct: 2   NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

Query: 85  -AKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSKNRRPIA 144
            A+SARMAK+ LWLEAYSD   SSFGFGCCK D  K+ DPFVEAYKKCTN  S + R I 
Sbjct: 62  RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121

Query: 145 GGSATNGVKRPGIRRRLLFSLSRKCCASS 171
           GGSATNGVKRP I RR+LFSLSRKCCASS
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKCCASS 150

BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match: A0A0A0KZZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1)

HSP 1 Score: 205 bits (521), Expect = 1.17e-64
Identity = 113/167 (67.66%), Postives = 122/167 (73.05%), Query Frame = 0

Query: 9   SSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSA--LKLPSPPYRSES 68
           SS P++ DFE L T+TNVPFSWEAKPGVPK QS  SP+ S FE  A  LKLPSPP RSES
Sbjct: 3   SSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRSES 62

Query: 69  ARLPDDYGEAIPCSSPR--AKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFV 128
           ARL  DY   I  S PR  A+SARMAK+ LWLEAYSD   SSFGFGCCK D  K+ DPFV
Sbjct: 63  ARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFV 122

Query: 129 EAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCCASS 171
           EAYKKC     +N R I G SATNG KRP I RR+LFSLSRKC ASS
Sbjct: 123 EAYKKC-----RNSRSINGASATNGAKRPNIIRRVLFSLSRKCFASS 164

BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match: A0A6J1ADZ8 (uncharacterized protein LOC110417148 OS=Herrania umbratica OX=108875 GN=LOC110417148 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.97e-08
Identity = 54/150 (36.00%), Postives = 70/150 (46.67%), Query Frame = 0

Query: 19  LLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIP 78
           ++ ++ NVPFSWE KPGV KL S        F +   KLPSPPY  ESAR+   +G  IP
Sbjct: 5   IVHSQGNVPFSWENKPGVCKLTSQEGSKEDYFLQ---KLPSPPYPPESARILI-HGVKIP 64

Query: 79  CSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGL-KERDPFVEAYKKCTNGPSKN 138
              P               A+   F +S       R GL K  DPF+ AYK+CT   SK 
Sbjct: 65  --PPPC-------------AFQHPFKTS-------RRGLRKSDDPFLAAYKECTKSTSKG 122

Query: 139 RRPIAGGSATNGVKRPGIRRRLLFSLSRKC 167
           +  +A     +G+K+        FS  R C
Sbjct: 125 K--LAKSDGGSGLKKGMFN----FSCKRSC 122

BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match: A0A061FEE8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034658 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.56e-07
Identity = 48/136 (35.29%), Postives = 63/136 (46.32%), Query Frame = 0

Query: 19  LLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLP--DDYGEA 78
           ++ ++ NVPFSWE KPGV KL S        F +   KLPSPPY  ESAR+   D     
Sbjct: 5   MVHSQGNVPFSWENKPGVCKLTSQEGSEEYYFLQ---KLPSPPYPPESARISIHDIKIPP 64

Query: 79  IPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSK 138
            PC                  A+   F +S   G  K D     DPF+ AYK+CT   SK
Sbjct: 65  PPC------------------AFQHPFKTSSRRGLRKSD-----DPFLAAYKECTKNTSK 112

Query: 139 NRRPIAGGSATNGVKR 152
            +  +A     +G+K+
Sbjct: 125 GK--LAKRDGGSGLKK 112

BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match: A0A067LAQ4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15992 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.76e-07
Identity = 45/149 (30.20%), Postives = 69/149 (46.31%), Query Frame = 0

Query: 22  TRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIPCSS 81
           ++ NVPFSWE KPGV K+ +  + +    ++  +KLP PP   ES R+   +  +IP   
Sbjct: 9   SKGNVPFSWEKKPGVSKVNAMINNNQEQ-DQIVVKLPPPPCPIESPRV-SAHEISIPLPP 68

Query: 82  PRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSKNRRPI 141
              +    +    W                         DPF+ AYK+CT   ++++  +
Sbjct: 69  CTFQPPSRSSSRKW------------------------DDPFLAAYKECTKSSTRSKAKV 128

Query: 142 AGGSATNGVKRPGIRRRLLFSLSRKCCAS 170
           AGGSA  G  R G+R+ + F LS K   S
Sbjct: 129 AGGSA--GFSRSGLRKGM-FKLSCKSSCS 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6608406.12.82e-11496.43hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037747.11.63e-11396.43hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0064469.12.29e-6673.83hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK201... [more]
XP_004141298.12.12e-6166.46uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetica... [more]
KAG5230775.13.39e-0935.10Stimulated by retinoic acid protein [Salix suchowensis][more]
Match NameE-valueIdentityDescription
A0A5D3D9E31.11e-6673.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZZ91.17e-6467.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1[more]
A0A6J1ADZ83.97e-0836.00uncharacterized protein LOC110417148 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A061FEE82.56e-0735.29Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034658 PE=4 SV=1[more]
A0A067LAQ45.76e-0730.20Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15992 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..69
NoneNo IPR availablePANTHERPTHR33696:SF12BNAA08G25910D PROTEINcoord: 20..170
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 20..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g06350.1Cp4.1LG02g06350.1mRNA