Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGTTCGAGTTCGAGTTCGAGTTCTCTTCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGTTGCAATCGAGTTCCAGCCCTAGCGTAAGCACGTTCGAGAAATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGGGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTGAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGAGAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGCCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCGTCCCCGTGA
mRNA sequence
ATGGCGAGTTCGAGTTCGAGTTCGAGTTCTCTTCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGTTGCAATCGAGTTCCAGCCCTAGCGTAAGCACGTTCGAGAAATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGGGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTGAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGAGAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGCCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCGTCCCCGTGA
Coding sequence (CDS)
ATGGCGAGTTCGAGTTCGAGTTCGAGTTCTCTTCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGTTGCAATCGAGTTCCAGCCCTAGCGTAAGCACGTTCGAGAAATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGGGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTGAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGAGAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGCCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCGTCCCCGTGA
Protein sequence
MASSSSSSSSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCCASSP
Homology
BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match:
KAG6608406.1 (hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 331 bits (849), Expect = 2.82e-114
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0
Query: 5 SSSSSSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRS 64
SSSSSS PLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSP+VSTFE+SALKLPSPPYRS
Sbjct: 3 SSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFERSALKLPSPPYRS 62
Query: 65 ESARLPDDYGEAIPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFV 124
ESARLPDDYGEAIPCSSPRAKSARMAKEHLWL+AYSDDFGSSFGFGCCKRDGLKE DPFV
Sbjct: 63 ESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFV 122
Query: 125 EAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCCASSP 172
EAYKKCTNGPSKNRRPI GGSATNGVKRPGIRRRLLFSLSRKCCASSP
Sbjct: 123 EAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP 170
BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match:
KAG7037747.1 (hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 329 bits (844), Expect = 1.63e-113
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0
Query: 5 SSSSSSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRS 64
SSSSSS PLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSP+VSTFE SALKLPSPPYRS
Sbjct: 3 SSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRS 62
Query: 65 ESARLPDDYGEAIPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFV 124
ESARLPDDYGEAIPCSSPRAKSARMAKEHLWL+AYSDDFGSSFGFGCCKRDGLKE DPFV
Sbjct: 63 ESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFV 122
Query: 125 EAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCCASSP 172
EAYKKCTNGPSKNRRPI GGSATNGVKRPGIRRRLLFSLSRKCCASSP
Sbjct: 123 EAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP 170
BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match:
KAA0064469.1 (hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK20119.1 hypothetical protein E5676_scaffold134G002440 [Cucumis melo var. makuwa])
HSP 1 Score: 209 bits (533), Expect = 2.29e-66
Identity = 110/149 (73.83%), Postives = 115/149 (77.18%), Query Frame = 0
Query: 25 NVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIPCSSPR- 84
NVPFSWEAKPGVPK QS SPS S FE S LKLPSPP RSESARL DY I S PR
Sbjct: 2 NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61
Query: 85 -AKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSKNRRPIA 144
A+SARMAK+ LWLEAYSD SSFGFGCCK D K+ DPFVEAYKKCTN S + R I
Sbjct: 62 RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121
Query: 145 GGSATNGVKRPGIRRRLLFSLSRKCCASS 171
GGSATNGVKRP I RR+LFSLSRKCCASS
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKCCASS 150
BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match:
XP_004141298.1 (uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetical protein Csa_012140 [Cucumis sativus])
HSP 1 Score: 197 bits (501), Expect = 2.12e-61
Identity = 109/164 (66.46%), Postives = 118/164 (71.95%), Query Frame = 0
Query: 9 SSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSA--LKLPSPPYRSES 68
SS P++ DFE L T+TNVPFSWEAKPGVPK QS SP+ S FE A LKLPSPP RSES
Sbjct: 3 SSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRSES 62
Query: 69 ARLPDDYGEAIPCSSPR--AKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFV 128
ARL DY I S PR A+SARMAK+ LWLEAYSD SSFGFGCCK D K+ DPFV
Sbjct: 63 ARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFV 122
Query: 129 EAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCC 168
EAYKKC +N R I G SATNG KRP I RR+LFSLSR C
Sbjct: 123 EAYKKC-----RNSRSINGASATNGAKRPNIIRRVLFSLSRFWC 161
BLAST of Cp4.1LG02g06350 vs. NCBI nr
Match:
KAG5230775.1 (Stimulated by retinoic acid protein [Salix suchowensis])
HSP 1 Score: 63.9 bits (154), Expect = 3.39e-09
Identity = 53/151 (35.10%), Postives = 72/151 (47.68%), Query Frame = 0
Query: 18 ELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLP-DDYGEA 77
+++Q++ NVPFSWE KPGVPK+ T+ LKLP PP S+ R P DD +A
Sbjct: 5 DVVQSKANVPFSWEQKPGVPKVTHQEVRPADTWHF-RLKLPPPPRASKCTRFPSDDNLQA 64
Query: 78 IPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLK-ERDPFVEAYKKCTNGPS 137
+ SS SSF + G++ + DPF+ AYKKCT P
Sbjct: 65 LSTSS-----------------------SSF------KKGIRIQEDPFLRAYKKCTRSPI 123
Query: 138 KNRRPIAGGSATNGVKRPGIRRRLLFSLSRK 166
N R G A G+ + +R+ SLS K
Sbjct: 125 -NGRLTRDGKADRGMPKT-VRKNAGSSLSCK 123
BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match:
A0A5D3D9E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002440 PE=4 SV=1)
HSP 1 Score: 209 bits (533), Expect = 1.11e-66
Identity = 110/149 (73.83%), Postives = 115/149 (77.18%), Query Frame = 0
Query: 25 NVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIPCSSPR- 84
NVPFSWEAKPGVPK QS SPS S FE S LKLPSPP RSESARL DY I S PR
Sbjct: 2 NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61
Query: 85 -AKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSKNRRPIA 144
A+SARMAK+ LWLEAYSD SSFGFGCCK D K+ DPFVEAYKKCTN S + R I
Sbjct: 62 RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121
Query: 145 GGSATNGVKRPGIRRRLLFSLSRKCCASS 171
GGSATNGVKRP I RR+LFSLSRKCCASS
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKCCASS 150
BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match:
A0A0A0KZZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1)
HSP 1 Score: 205 bits (521), Expect = 1.17e-64
Identity = 113/167 (67.66%), Postives = 122/167 (73.05%), Query Frame = 0
Query: 9 SSLPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSA--LKLPSPPYRSES 68
SS P++ DFE L T+TNVPFSWEAKPGVPK QS SP+ S FE A LKLPSPP RSES
Sbjct: 3 SSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRSES 62
Query: 69 ARLPDDYGEAIPCSSPR--AKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFV 128
ARL DY I S PR A+SARMAK+ LWLEAYSD SSFGFGCCK D K+ DPFV
Sbjct: 63 ARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFV 122
Query: 129 EAYKKCTNGPSKNRRPIAGGSATNGVKRPGIRRRLLFSLSRKCCASS 171
EAYKKC +N R I G SATNG KRP I RR+LFSLSRKC ASS
Sbjct: 123 EAYKKC-----RNSRSINGASATNGAKRPNIIRRVLFSLSRKCFASS 164
BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match:
A0A6J1ADZ8 (uncharacterized protein LOC110417148 OS=Herrania umbratica OX=108875 GN=LOC110417148 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 3.97e-08
Identity = 54/150 (36.00%), Postives = 70/150 (46.67%), Query Frame = 0
Query: 19 LLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIP 78
++ ++ NVPFSWE KPGV KL S F + KLPSPPY ESAR+ +G IP
Sbjct: 5 IVHSQGNVPFSWENKPGVCKLTSQEGSKEDYFLQ---KLPSPPYPPESARILI-HGVKIP 64
Query: 79 CSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGL-KERDPFVEAYKKCTNGPSKN 138
P A+ F +S R GL K DPF+ AYK+CT SK
Sbjct: 65 --PPPC-------------AFQHPFKTS-------RRGLRKSDDPFLAAYKECTKSTSKG 122
Query: 139 RRPIAGGSATNGVKRPGIRRRLLFSLSRKC 167
+ +A +G+K+ FS R C
Sbjct: 125 K--LAKSDGGSGLKKGMFN----FSCKRSC 122
BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match:
A0A061FEE8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034658 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 2.56e-07
Identity = 48/136 (35.29%), Postives = 63/136 (46.32%), Query Frame = 0
Query: 19 LLQTRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLP--DDYGEA 78
++ ++ NVPFSWE KPGV KL S F + KLPSPPY ESAR+ D
Sbjct: 5 MVHSQGNVPFSWENKPGVCKLTSQEGSEEYYFLQ---KLPSPPYPPESARISIHDIKIPP 64
Query: 79 IPCSSPRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSK 138
PC A+ F +S G K D DPF+ AYK+CT SK
Sbjct: 65 PPC------------------AFQHPFKTSSRRGLRKSD-----DPFLAAYKECTKNTSK 112
Query: 139 NRRPIAGGSATNGVKR 152
+ +A +G+K+
Sbjct: 125 GK--LAKRDGGSGLKK 112
BLAST of Cp4.1LG02g06350 vs. ExPASy TrEMBL
Match:
A0A067LAQ4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15992 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 5.76e-07
Identity = 45/149 (30.20%), Postives = 69/149 (46.31%), Query Frame = 0
Query: 22 TRTNVPFSWEAKPGVPKLQSSSSPSVSTFEKSALKLPSPPYRSESARLPDDYGEAIPCSS 81
++ NVPFSWE KPGV K+ + + + ++ +KLP PP ES R+ + +IP
Sbjct: 9 SKGNVPFSWEKKPGVSKVNAMINNNQEQ-DQIVVKLPPPPCPIESPRV-SAHEISIPLPP 68
Query: 82 PRAKSARMAKEHLWLEAYSDDFGSSFGFGCCKRDGLKERDPFVEAYKKCTNGPSKNRRPI 141
+ + W DPF+ AYK+CT ++++ +
Sbjct: 69 CTFQPPSRSSSRKW------------------------DDPFLAAYKECTKSSTRSKAKV 128
Query: 142 AGGSATNGVKRPGIRRRLLFSLSRKCCAS 170
AGGSA G R G+R+ + F LS K S
Sbjct: 129 AGGSA--GFSRSGLRKGM-FKLSCKSSCS 128
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6608406.1 | 2.82e-114 | 96.43 | hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7037747.1 | 1.63e-113 | 96.43 | hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAA0064469.1 | 2.29e-66 | 73.83 | hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK201... | [more] |
XP_004141298.1 | 2.12e-61 | 66.46 | uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetica... | [more] |
KAG5230775.1 | 3.39e-09 | 35.10 | Stimulated by retinoic acid protein [Salix suchowensis] | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3D9E3 | 1.11e-66 | 73.83 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KZZ9 | 1.17e-64 | 67.66 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1 | [more] |
A0A6J1ADZ8 | 3.97e-08 | 36.00 | uncharacterized protein LOC110417148 OS=Herrania umbratica OX=108875 GN=LOC11041... | [more] |
A0A061FEE8 | 2.56e-07 | 35.29 | Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034658 PE=4 SV=1 | [more] |
A0A067LAQ4 | 5.76e-07 | 30.20 | Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15992 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |