Cp4.1LG02g05540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g05540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Transmembrane protein
Location	Cp4.1LG02: 1690242 .. 1690544 (+)
RNA-Seq Expression	Cp4.1LG02g05540
Synteny	Cp4.1LG02g05540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAACGAGGAGTGGAGGAAAAATGCAGATACGCACAAAATGAAGCCGGAGGATGTAAAAGCAGCAGGAGTGGAAGCCTCCAAGAGGCCTCCAGGACACCACCCAGGCACAACCCTACACCAGCGCCGGAGTCTCCCCTACAGCATCACCACCATGACAATCGCTGGCCTCTTCATCGTCGGCGCCATCGGATATATCACCTTATACACCATGAAAAAGCCCGAAGCCTCTGCCAAAGACGTCGCCAAGGTCGCTACGAATGTCGCAGAACCTGAAGACACCAAGCCCAGGAAGTAG

mRNA sequence

ATGGGAAGCAACGAGGAGTGGAGGAAAAATGCAGATACGCACAAAATGAAGCCGGAGGATGTAAAAGCAGCAGGAGTGGAAGCCTCCAAGAGGCCTCCAGGACACCACCCAGGCACAACCCTACACCAGCGCCGGAGTCTCCCCTACAGCATCACCACCATGACAATCGCTGGCCTCTTCATCGTCGGCGCCATCGGATATATCACCTTATACACCATGAAAAAGCCCGAAGCCTCTGCCAAAGACGTCGCCAAGGTCGCTACGAATGTCGCAGAACCTGAAGACACCAAGCCCAGGAAGTAG

Coding sequence (CDS)

ATGGGAAGCAACGAGGAGTGGAGGAAAAATGCAGATACGCACAAAATGAAGCCGGAGGATGTAAAAGCAGCAGGAGTGGAAGCCTCCAAGAGGCCTCCAGGACACCACCCAGGCACAACCCTACACCAGCGCCGGAGTCTCCCCTACAGCATCACCACCATGACAATCGCTGGCCTCTTCATCGTCGGCGCCATCGGATATATCACCTTATACACCATGAAAAAGCCCGAAGCCTCTGCCAAAGACGTCGCCAAGGTCGCTACGAATGTCGCAGAACCTGAAGACACCAAGCCCAGGAAGTAG

Protein sequence

MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLFIVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK

Homology

[Close]

BLAST of Cp4.1LG02g05540 vs. NCBI nr
Match: XP_022940906.1 (uncharacterized protein LOC111446354 [Cucurbita moschata] >XP_023524434.1 uncharacterized protein LOC111788336 [Cucurbita pepo subsp. pepo] >KAG6608309.1 hypothetical protein SDJN03_01651, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037656.1 hypothetical protein SDJN02_01286, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201 bits (510), Expect = 7.12e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK
Sbjct: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100

[Close]

BLAST of Cp4.1LG02g05540 vs. NCBI nr
Match: XP_022981851.1 (uncharacterized protein LOC111480870 [Cucurbita maxima])

HSP 1 Score: 200 bits (509), Expect = 1.01e-64
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVGAIGYITLYTMKKPEASAKDVAKVATN+AEPEDTKPRK
Sbjct: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNIAEPEDTKPRK 100

[Close]

BLAST of Cp4.1LG02g05540 vs. NCBI nr
Match: KAA0064577.1 (uncharacterized protein E6C27_scaffold255G002980 [Cucumis melo var. makuwa] >TYK20013.1 uncharacterized protein E5676_scaffold134G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (481), Expect = 1.89e-60
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKM+PEDVKAAGVEASKRPPGHHPGT LHQRRSLPYS TTMT+AGL 
Sbjct: 1   MGSNEEWRKNADTHKMRPEDVKAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTVAGLL 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVGAIGY TLY+MKKPEASAKDVAKVATNVAEPEDTKPRK
Sbjct: 61  IVGAIGYFTLYSMKKPEASAKDVAKVATNVAEPEDTKPRK 100

[Close]

BLAST of Cp4.1LG02g05540 vs. NCBI nr
Match: XP_004145498.1 (uncharacterized protein LOC101212329 [Cucumis sativus] >KGN55424.1 hypothetical protein Csa_012630 [Cucumis sativus])

HSP 1 Score: 189 bits (480), Expect = 2.69e-60
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGT LHQRRSLPYS TTMT+AGL 
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTVLHQRRSLPYSYTTMTVAGLL 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVG IGY+TLYT+KKPEASAKDVAKVATNVAEPE+TKPRK
Sbjct: 61  IVGTIGYLTLYTLKKPEASAKDVAKVATNVAEPEETKPRK 100

[Close]

BLAST of Cp4.1LG02g05540 vs. NCBI nr
Match: XP_008452845.1 (PREDICTED: uncharacterized protein LOC103493743 [Cucumis melo])

HSP 1 Score: 189 bits (481), Expect = 9.72e-60
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKM+PEDVKAAGVEASKRPPGHHPGT LHQRRSLPYS TTMT+AGL 
Sbjct: 52  MGSNEEWRKNADTHKMRPEDVKAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTVAGLL 111

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVGAIGY TLY+MKKPEASAKDVAKVATNVAEPEDTKPRK
Sbjct: 112 IVGAIGYFTLYSMKKPEASAKDVAKVATNVAEPEDTKPRK 151

[Close]

BLAST of Cp4.1LG02g05540 vs. ExPASy TrEMBL
Match: A0A6J1FJP6 (uncharacterized protein LOC111446354 OS=Cucurbita moschata OX=3662 GN=LOC111446354 PE=4 SV=1)

HSP 1 Score: 201 bits (510), Expect = 3.45e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK
Sbjct: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100

[Close]

BLAST of Cp4.1LG02g05540 vs. ExPASy TrEMBL
Match: A0A6J1IXP8 (uncharacterized protein LOC111480870 OS=Cucurbita maxima OX=3661 GN=LOC111480870 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 4.90e-65
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVGAIGYITLYTMKKPEASAKDVAKVATN+AEPEDTKPRK
Sbjct: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNIAEPEDTKPRK 100

[Close]

BLAST of Cp4.1LG02g05540 vs. ExPASy TrEMBL
Match: A0A5A7VC84 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001310 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 9.16e-61
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKM+PEDVKAAGVEASKRPPGHHPGT LHQRRSLPYS TTMT+AGL 
Sbjct: 1   MGSNEEWRKNADTHKMRPEDVKAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTVAGLL 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVGAIGY TLY+MKKPEASAKDVAKVATNVAEPEDTKPRK
Sbjct: 61  IVGAIGYFTLYSMKKPEASAKDVAKVATNVAEPEDTKPRK 100

[Close]

BLAST of Cp4.1LG02g05540 vs. ExPASy TrEMBL
Match: A0A0A0L315 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651900 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 1.30e-60
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGT LHQRRSLPYS TTMT+AGL 
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTVLHQRRSLPYSYTTMTVAGLL 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVG IGY+TLYT+KKPEASAKDVAKVATNVAEPE+TKPRK
Sbjct: 61  IVGTIGYLTLYTLKKPEASAKDVAKVATNVAEPEETKPRK 100

[Close]

BLAST of Cp4.1LG02g05540 vs. ExPASy TrEMBL
Match: A0A1S3BVM2 (uncharacterized protein LOC103493743 OS=Cucumis melo OX=3656 GN=LOC103493743 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 4.71e-60
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           MGSNEEWRKNADTHKM+PEDVKAAGVEASKRPPGHHPGT LHQRRSLPYS TTMT+AGL 
Sbjct: 52  MGSNEEWRKNADTHKMRPEDVKAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTVAGLL 111

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100
           IVGAIGY TLY+MKKPEASAKDVAKVATNVAEPEDTKPRK
Sbjct: 112 IVGAIGYFTLYSMKKPEASAKDVAKVATNVAEPEDTKPRK 151

[Close]

BLAST of Cp4.1LG02g05540 vs. TAIR 10
Match: AT4G31830.1 (unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-31
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60
           M   E+WRK ADT KM  E VKAAGVE+SKRPPG +PG  LHQRR+LPYS TTM +AGL 
Sbjct: 1   MAGEEDWRKTADTTKMSSEGVKAAGVESSKRPPGSNPGGVLHQRRNLPYSYTTMALAGLA 60

Query: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 101
           I GAI Y  +Y  KKPEA+A DVAK AT  A+PEDT PRK
Sbjct: 61  ISGAIMYTVMYAKKKPEATATDVAKAATGTAKPEDTHPRK 100

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g05540 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g05540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940906.1	7.12e-65	100.00	uncharacterized protein LOC111446354 [Cucurbita moschata] >XP_023524434.1 unchar...	[more]
XP_022981851.1	1.01e-64	99.00	uncharacterized protein LOC111480870 [Cucurbita maxima]	[more]
KAA0064577.1	1.89e-60	93.00	uncharacterized protein E6C27_scaffold255G002980 [Cucumis melo var. makuwa] >TYK...	[more]
XP_004145498.1	2.69e-60	92.00	uncharacterized protein LOC101212329 [Cucumis sativus] >KGN55424.1 hypothetical ...	[more]
XP_008452845.1	9.72e-60	93.00	PREDICTED: uncharacterized protein LOC103493743 [Cucumis melo]	[more]

BLAST of Cp4.1LG02g05540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJP6	3.45e-65	100.00	uncharacterized protein LOC111446354 OS=Cucurbita moschata OX=3662 GN=LOC1114463...	[more]
A0A6J1IXP8	4.90e-65	99.00	uncharacterized protein LOC111480870 OS=Cucurbita maxima OX=3661 GN=LOC111480870...	[more]
A0A5A7VC84	9.16e-61	93.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L315	1.30e-60	92.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651900 PE=4 SV=1	[more]
A0A1S3BVM2	4.71e-60	93.00	uncharacterized protein LOC103493743 OS=Cucumis melo OX=3656 GN=LOC103493743 PE=...	[more]

BLAST of Cp4.1LG02g05540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31830.1	4.2e-31	67.00	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR33919	OS09G0127700 PROTEIN	coord: 6..100
None	No IPR available	PANTHER	PTHR33919:SF1	OS09G0127700 PROTEIN	coord: 6..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g05540.1	Cp4.1LG02g05540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane