Cp4.1LG02g04450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g04450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	polyadenylate-binding protein-interacting protein 5
Location	Cp4.1LG02: 2420643 .. 2422920 (+)
RNA-Seq Expression	Cp4.1LG02g04450
Synteny	Cp4.1LG02g04450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAGTATCGGGTCAACCCGTTTTCAAACGGCGGCTAAGCTCCGTAACTGACGGTTACATTTTCGTATGCTTTTACAACAGTGTTAACGGCGACATTCCAACCACGTAGAGCATCTTATCACTGTGTCCAAACAGACCCCTCAAATCAATCATCAAGAGGTTCAAGTGAGAAGTCTTATATAGTCTGCTTAGACCCAACACAACCATGAGGATCTTCTTCGATACTTCTCAATCTCAATTCCGTATTTATGAACCCCAGCTTTCCGATCATTGCCTCATTTCTCTCTTCAGTTTAATCGTGTAGCGATTAGGGTTTCGTAAGTTCTTTACTTATTGTTGAAATTCGGTCTTCGAGATCGAGATTTCGTCTCCGAAGGTGAGTTTCTTGTTTGGAAGTCCGATCGTCGTGATGAGCGTTGAATTCTCGAGTTTTTCTTTCGATACCACTGTTTTTTTCATGTAGTTTTTTATTGTGAAGTGAAATAGATGAAGTTTTGTGGCTTTTTAAACTGGTGGTGTTGCATGTATGTCGGTTATCCAACTGATTTGTGGTGGTTTGATAATCTTACTTGATGTTAGGTTTAGAGGTAATGGTTTGTGGTACTCTAATGTCTGTGGTGATCGAGATTTTCTTTCTTCGCTTTGTAAGCTTTGGATGTTTGAACTTTCTTCTTTAAACTTGATTTTGAAAGTGGTTCGCTGTTCAGGATTTGATTCTTCTGATGTTGGTTTGATCTTTGCTTGTCTTGGAGTTCTTATGAACTCTTCATTGGCGTAGTTTTCCGATAAAGTTAAATGGTCAACTTCTGGTGAAGAAACATAGATATGGTTAATATTGTTTTTCTGATCATGCGACCTATGCTTCGAATTGCTAGAAGTTCGAAATTGTGAGCGGATTATTTGATGCAGCTCTGTTGAATGTTCTTGATCTGAATATCCTCTTCTCCTTTGAATTTAATTTTAGATGCATGCAGGACTTGAAGGTCATGCGTGAATTGACTTTGAAAGTTCTATGAGATTATATGTGTTCTTCATTCGTGATTTTTTCTTTTTGGGTTAAATTGTTGTGGTGGAACGACAGGGCAAGGTGCCAATCATTTCTGTATCTGGAGCAATGAAGCCGATTGGATCATCTTTGAATCCATATGCAACATCCTACATTCCACTCTCCAAGAGAGAGGCCAACAAAACTTTTATACCAGAAAACTCTTCCAGGGGAAATGTTGGGGCTATCATTCCGGGATATTCTGAACATCATATTTATAATCCTCAGTACGACGACATTTCCCCGTTTTTAAACATGCATCGTGGCGAAAAGGCACCTGGTTCTGTTGCTTCTGCTGTGAAGAATCACCCTTTTCATGGACCAAGTTCACGAAGGACTGAAATGGCGATGATGTTTGGTAGAGAAATGTTCATGGAACTAGAGTTGCTTCACGAAAGTTTCCCTGGATTATCTGATCAGTCCATTACTGAAGTCTATTTTGCAAATAAGGGTGACTTGGATGCTGCTATAGACATGCTGAACCAGCTCGAGGTTCTCTCTTTCGATACTCGTTATTGTTCTTGATTTCTATCTTAAACTGCTGTTCCACTTGTTATTGATTTATGCTTAGGATTTGCATTGCTTAACTGTTTTGTTGGTTTAATTTGATGCTTAGAACAAACATTCAGCTGATTTTGAATATGCCCCTCAAAGTCTCCCGGACTCTTTGGACATCGGCGATATCTCGGAATCTGGGTTTGCAGATGTTAGTCAACCATCTTTCAGAATGAAGAGTGCCAATGGCGGCCCTGGTACCTCATCCAGGTTCTAGGGAGTGTCTGTTGGTTTTGAGAAGTGTGTTTTTCCTTTGATTACTTGTGTGGGTTGATGCTCCATATAAGTGAAAACACTCTTCTTTGGGATATAAGGGACCATCTTTGGTTATAGGATTGTATAGTTCCTTATACTTACATGAACTCATATGCATCGGGGTCGTTGTCGTCGTCGTTTCGGCCAATCAAAAAGATCGAAATATAGCGAGCTTTTGCTGGTTGATTCAAGTCCACACATGATTTCTGAACTATTTTGATTCAGAATTAATATTATGTTGTATTGCTTCATTGCATTTTTCCTGGTGTGATCTGTTCTCTTTTAACTTCTTATATCATGAAAATGCACAAAACGAGTGTTTTTCCATGAAGAAAGGATGGAAATATTTTGATGCATTATTGATGGGTTATTTTAGTCCCAAAAAAAGCATCAACCATGCACGGTAACGTATATAATATAATA

mRNA sequence

GTCAGTATCGGGTCAACCCGTTTTCAAACGGCGGCTAAGCTCCGTAACTGACGGTTACATTTTCGTATGCTTTTACAACAGTGTTAACGGCGACATTCCAACCACGTAGAGCATCTTATCACTGTGTCCAAACAGACCCCTCAAATCAATCATCAAGAGGTTCAAGTGAGAAGTCTTATATAGTCTGCTTAGACCCAACACAACCATGAGGATCTTCTTCGATACTTCTCAATCTCAATTCCGTATTTATGAACCCCAGCTTTCCGATCATTGCCTCATTTCTCTCTTCAGTTTAATCGTGTAGCGATTAGGGTTTCGTAAGTTCTTTACTTATTGTTGAAATTCGGTCTTCGAGATCGAGATTTCGTCTCCGAAGGGCAAGGTGCCAATCATTTCTGTATCTGGAGCAATGAAGCCGATTGGATCATCTTTGAATCCATATGCAACATCCTACATTCCACTCTCCAAGAGAGAGGCCAACAAAACTTTTATACCAGAAAACTCTTCCAGGGGAAATGTTGGGGCTATCATTCCGGGATATTCTGAACATCATATTTATAATCCTCAGTACGACGACATTTCCCCGTTTTTAAACATGCATCGTGGCGAAAAGGCACCTGGTTCTGTTGCTTCTGCTGTGAAGAATCACCCTTTTCATGGACCAAGTTCACGAAGGACTGAAATGGCGATGATGTTTGGTAGAGAAATGTTCATGGAACTAGAGTTGCTTCACGAAAGTTTCCCTGGATTATCTGATCAGTCCATTACTGAAGTCTATTTTGCAAATAAGGGTGACTTGGATGCTGCTATAGACATGCTGAACCAGCTCGAGAACAAACATTCAGCTGATTTTGAATATGCCCCTCAAAGTCTCCCGGACTCTTTGGACATCGGCGATATCTCGGAATCTGGGTTTGCAGATGTTAGTCAACCATCTTTCAGAATGAAGAGTGCCAATGGCGGCCCTGGTACCTCATCCAGGTTCTAGGGAGTGTCTGTTGGTTTTGAGAAGTGTGTTTTTCCTTTGATTACTTGTGTGGGTTGATGCTCCATATAAGTGAAAACACTCTTCTTTGGGATATAAGGGACCATCTTTGGTTATAGGATTGTATAGTTCCTTATACTTACATGAACTCATATGCATCGGGGTCGTTGTCGTCGTCGTTTCGGCCAATCAAAAAGATCGAAATATAGCGAGCTTTTGCTGGTTGATTCAAGTCCACACATGATTTCTGAACTATTTTGATTCAGAATTAATATTATGTTGTATTGCTTCATTGCATTTTTCCTGGTGTGATCTGTTCTCTTTTAACTTCTTATATCATGAAAATGCACAAAACGAGTGTTTTTCCATGAAGAAAGGATGGAAATATTTTGATGCATTATTGATGGGTTATTTTAGTCCCAAAAAAAGCATCAACCATGCACGGTAACGTATATAATATAATA

Coding sequence (CDS)

ATGAAGCCGATTGGATCATCTTTGAATCCATATGCAACATCCTACATTCCACTCTCCAAGAGAGAGGCCAACAAAACTTTTATACCAGAAAACTCTTCCAGGGGAAATGTTGGGGCTATCATTCCGGGATATTCTGAACATCATATTTATAATCCTCAGTACGACGACATTTCCCCGTTTTTAAACATGCATCGTGGCGAAAAGGCACCTGGTTCTGTTGCTTCTGCTGTGAAGAATCACCCTTTTCATGGACCAAGTTCACGAAGGACTGAAATGGCGATGATGTTTGGTAGAGAAATGTTCATGGAACTAGAGTTGCTTCACGAAAGTTTCCCTGGATTATCTGATCAGTCCATTACTGAAGTCTATTTTGCAAATAAGGGTGACTTGGATGCTGCTATAGACATGCTGAACCAGCTCGAGAACAAACATTCAGCTGATTTTGAATATGCCCCTCAAAGTCTCCCGGACTCTTTGGACATCGGCGATATCTCGGAATCTGGGTTTGCAGATGTTAGTCAACCATCTTTCAGAATGAAGAGTGCCAATGGCGGCCCTGGTACCTCATCCAGGTTCTAG

Protein sequence

MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPFLNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSITEVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMKSANGGPGTSSRF

Homology

[Close]

BLAST of Cp4.1LG02g04450 vs. ExPASy Swiss-Prot
Match: Q6NQH9 (Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3702 GN=CID6 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 61/168 (36.31%), Postives = 83/168 (49.40%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MK   S+LNPYA +Y+PLSKRE +       + +           +HH   P Y      
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGSLVDTKPVTQQHM-------QQQHHQQQPYYGYGVQG 60

Query: 61  LNMHRGEK--APGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQS 120
           +  ++G +     S +  V NH                  EM M++E L  ++PGLS +S
Sbjct: 61  MGSYQGTQMSPKKSPSEMVYNHQLKDED-----------LEMDMDIEYLLATYPGLSQES 120

Query: 121 ITEVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISE 167
           I +VY AN  DLDA I+MLNQLE   +   EY    LPD+LDIGD+ E
Sbjct: 121 INDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE 146

[Close]

BLAST of Cp4.1LG02g04450 vs. ExPASy Swiss-Prot
Match: Q9LYE5 (Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3702 GN=CID5 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKP   +LNP+A SY+P+SKR         +   G+ G +                 SP 
Sbjct: 1   MKPGAFALNPHAASYVPISKR--------VDYGGGDDGLVFAAK-------------SPT 60

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
           + +   +K+       +++           ++ M    ++ M++E L  +F GLS +SIT
Sbjct: 61  VEVSMPKKSSEMAYKQIRDDDL--------DLEM----DIDMDIEYLLVTFSGLSQESIT 120

Query: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESG 169
           +VY AN GDL+A I+MLNQLE  +S + E   ++LP++LDIGDISESG
Sbjct: 121 DVYLANGGDLEATIEMLNQLE-IYSTESE---ENLPETLDIGDISESG 131

[Close]

BLAST of Cp4.1LG02g04450 vs. NCBI nr
Match: XP_023524390.1 (polyadenylate-binding protein-interacting protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389 bits (1000), Expect = 1.30e-136
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF
Sbjct: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
           LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT
Sbjct: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120

Query: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180
           EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK
Sbjct: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180

Query: 181 SANGGPGTSSRF 192
           SANGGPGTSSRF
Sbjct: 181 SANGGPGTSSRF 192

[Close]

BLAST of Cp4.1LG02g04450 vs. NCBI nr
Match: XP_022941292.1 (polyadenylate-binding protein-interacting protein 6-like [Cucurbita moschata])

HSP 1 Score: 387 bits (995), Expect = 7.55e-136
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGN+G IIPGYSEHHIYNPQYDDISPF
Sbjct: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNIGTIIPGYSEHHIYNPQYDDISPF 60

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
           LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT
Sbjct: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120

Query: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180
           EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK
Sbjct: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180

Query: 181 SANGGPGTSSRF 192
           SANGGPGTSSRF
Sbjct: 181 SANGGPGTSSRF 192

[Close]

BLAST of Cp4.1LG02g04450 vs. NCBI nr
Match: KAG7031819.1 (Polyadenylate-binding protein-interacting protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 388 bits (996), Expect = 1.85e-135
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVG IIPGYSEHHIYNPQYDDISPF
Sbjct: 36  MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGTIIPGYSEHHIYNPQYDDISPF 95

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
           LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT
Sbjct: 96  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 155

Query: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180
           EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK
Sbjct: 156 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 215

Query: 181 SANGGPGTSSRF 192
           SANGGPGTSSRF
Sbjct: 216 SANGGPGTSSRF 227

[Close]

BLAST of Cp4.1LG02g04450 vs. NCBI nr
Match: XP_022981982.1 (polyadenylate-binding protein-interacting protein 6-like [Cucurbita maxima])

HSP 1 Score: 384 bits (985), Expect = 2.53e-134
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKPIGSSLNPYATSYIPLSKREANKT IPENSSRGN+GAIIPGYSEHHIYNPQYDDISPF
Sbjct: 1   MKPIGSSLNPYATSYIPLSKREANKTLIPENSSRGNIGAIIPGYSEHHIYNPQYDDISPF 60

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
           LNMHRGEKAPGSVASAVKNHPFHGP SRRTEMAMMFGREMFMELELLHESFPGLSDQSIT
Sbjct: 61  LNMHRGEKAPGSVASAVKNHPFHGPGSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120

Query: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180
           EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK
Sbjct: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180

Query: 181 SANGGPGTSSRF 192
           S NGGPGTSSRF
Sbjct: 181 SVNGGPGTSSRF 192

[Close]

BLAST of Cp4.1LG02g04450 vs. NCBI nr
Match: KAG6608180.1 (Translocon at the inner envelope membrane of chloroplasts 236, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 383 bits (984), Expect = 2.10e-119
Identity = 188/191 (98.43%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1    MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
            MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGA+IPGYSEHHIYNPQYDDISPF
Sbjct: 2521 MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAVIPGYSEHHIYNPQYDDISPF 2580

Query: 61   LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
            LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT
Sbjct: 2581 LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 2640

Query: 121  EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180
            EVYFANKGDLDAAIDMLNQLENKHSADFEY PQSLPDSLDIGDISESGFADVSQPSFRMK
Sbjct: 2641 EVYFANKGDLDAAIDMLNQLENKHSADFEYPPQSLPDSLDIGDISESGFADVSQPSFRMK 2700

Query: 181  SANGGPGTSSR 191
            S+NGGPGTSSR
Sbjct: 2701 SSNGGPGTSSR 2711

[Close]

BLAST of Cp4.1LG02g04450 vs. ExPASy TrEMBL
Match: A0A6J1FM20 (polyadenylate-binding protein-interacting protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111446634 PE=4 SV=1)

HSP 1 Score: 387 bits (995), Expect = 3.65e-136
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGN+G IIPGYSEHHIYNPQYDDISPF
Sbjct: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNIGTIIPGYSEHHIYNPQYDDISPF 60

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
           LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT
Sbjct: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120

Query: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180
           EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK
Sbjct: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180

Query: 181 SANGGPGTSSRF 192
           SANGGPGTSSRF
Sbjct: 181 SANGGPGTSSRF 192

[Close]

BLAST of Cp4.1LG02g04450 vs. ExPASy TrEMBL
Match: A0A6J1IVG0 (polyadenylate-binding protein-interacting protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111480970 PE=4 SV=1)

HSP 1 Score: 384 bits (985), Expect = 1.22e-134
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKPIGSSLNPYATSYIPLSKREANKT IPENSSRGN+GAIIPGYSEHHIYNPQYDDISPF
Sbjct: 1   MKPIGSSLNPYATSYIPLSKREANKTLIPENSSRGNIGAIIPGYSEHHIYNPQYDDISPF 60

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
           LNMHRGEKAPGSVASAVKNHPFHGP SRRTEMAMMFGREMFMELELLHESFPGLSDQSIT
Sbjct: 61  LNMHRGEKAPGSVASAVKNHPFHGPGSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120

Query: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180
           EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK
Sbjct: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPSFRMK 180

Query: 181 SANGGPGTSSRF 192
           S NGGPGTSSRF
Sbjct: 181 SVNGGPGTSSRF 192

[Close]

BLAST of Cp4.1LG02g04450 vs. ExPASy TrEMBL
Match: A0A1S3CR41 (polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=LOC103503796 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 9.46e-80
Identity = 129/196 (65.82%), Postives = 154/196 (78.57%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKP GSSLNP+ATSYIPLS+R AN+TFI EN+SR N+GA +PGYSE  +Y P  + ISP 
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLYPPYNNSISPR 60

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRT----EMAMMFGREMFMELELLHESFPGLSD 120
           LNM+ G+KA  + +SAVKNHPFHG  S+++    EM + F RE+ M+LELL  SFPGLS+
Sbjct: 61  LNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEI-FDREVNMDLELLQVSFPGLSE 120

Query: 121 QSITEVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPS 180
           QS+T+VYFANKGDLDAAIDML+QLENKH  D EY  +SLPD+LDIGDISESGF  V QPS
Sbjct: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 180

Query: 181 FRMKSANGGPGTSSRF 192
           FRMK+      TSSRF
Sbjct: 181 FRMKNVANQASTSSRF 195

[Close]

BLAST of Cp4.1LG02g04450 vs. ExPASy TrEMBL
Match: A0A5A7TBQ8 (Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007180 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 2.65e-79
Identity = 129/196 (65.82%), Postives = 154/196 (78.57%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKP GSSLNP+ATSYIPLS+R AN+TFI EN+SR N+GA +PGYSE  +Y P  + ISP 
Sbjct: 32  MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLYPPYNNSISPR 91

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRT----EMAMMFGREMFMELELLHESFPGLSD 120
           LNM+ G+KA  + +SAVKNHPFHG  S+++    EM + F RE+ M+LELL  SFPGLS+
Sbjct: 92  LNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEI-FDREVNMDLELLQVSFPGLSE 151

Query: 121 QSITEVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQPS 180
           QS+T+VYFANKGDLDAAIDML+QLENKH  D EY  +SLPD+LDIGDISESGF  V QPS
Sbjct: 152 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 211

Query: 181 FRMKSANGGPGTSSRF 192
           FRMK+      TSSRF
Sbjct: 212 FRMKNVANQASTSSRF 226

[Close]

BLAST of Cp4.1LG02g04450 vs. ExPASy TrEMBL
Match: A0A0A0LHC3 (CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV=1)

HSP 1 Score: 243 bits (619), Expect = 7.73e-79
Identity = 134/198 (67.68%), Postives = 158/198 (79.80%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDD-ISP 60
           MKP GSSLNP+ATSYIPLS+R AN+TFI EN+SR N+GA +PGYSE  +YNP Y++ ISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60

Query: 61  FLNMHRGEKAPGSVA-SAVKNHPFHGPSSRR----TEMAMMFGREMFMELELLHESFPGL 120
            LNM+ G+KA  SVA +AVKNHPF G  S++    TEM M F RE+ M++ELL  SFPGL
Sbjct: 61  RLNMNHGKKA--SVAGAAVKNHPFLGSLSQQSSDLTEMEM-FDREVNMDIELLQVSFPGL 120

Query: 121 SDQSITEVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQ 180
           S+QS+T+VYFANKGDLDAAIDML+QLENKH  D EY P+SLPD+LDIGDISESGF  V Q
Sbjct: 121 SEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQ 180

Query: 181 PSFRMKSANGGPGTSSRF 192
           PSFRMK+      TSSRF
Sbjct: 181 PSFRMKNVANQASTSSRF 195

[Close]

BLAST of Cp4.1LG02g04450 vs. TAIR 10
Match: AT5G25540.1 (CTC-interacting domain 6 )

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-16
Identity = 61/168 (36.31%), Postives = 83/168 (49.40%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MK   S+LNPYA +Y+PLSKRE +       + +           +HH   P Y      
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGSLVDTKPVTQQHM-------QQQHHQQQPYYGYGVQG 60

Query: 61  LNMHRGEK--APGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQS 120
           +  ++G +     S +  V NH                  EM M++E L  ++PGLS +S
Sbjct: 61  MGSYQGTQMSPKKSPSEMVYNHQLKDED-----------LEMDMDIEYLLATYPGLSQES 120

Query: 121 ITEVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISE 167
           I +VY AN  DLDA I+MLNQLE   +   EY    LPD+LDIGD+ E
Sbjct: 121 INDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE 146

[Close]

BLAST of Cp4.1LG02g04450 vs. TAIR 10
Match: AT5G11440.1 (CTC-interacting domain 5 )

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-14
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 0


Query: 1   MKPIGSSLNPYATSYIPLSKREANKTFIPENSSRGNVGAIIPGYSEHHIYNPQYDDISPF 60
           MKP   +LNP+A SY+P+SKR         +   G+ G +                 SP 
Sbjct: 1   MKPGAFALNPHAASYVPISKR--------VDYGGGDDGLVFAAK-------------SPT 60

Query: 61  LNMHRGEKAPGSVASAVKNHPFHGPSSRRTEMAMMFGREMFMELELLHESFPGLSDQSIT 120
           + +   +K+       +++           ++ M    ++ M++E L  +F GLS +SIT
Sbjct: 61  VEVSMPKKSSEMAYKQIRDDDL--------DLEM----DIDMDIEYLLVTFSGLSQESIT 120

Query: 121 EVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESG 169
           +VY AN GDL+A I+MLNQLE  +S + E   ++LP++LDIGDISESG
Sbjct: 121 DVYLANGGDLEATIEMLNQLE-IYSTESE---ENLPETLDIGDISESG 131

[Close]

BLAST of Cp4.1LG02g04450 vs. TAIR 10
Match: AT2G26280.1 (CTC-interacting domain 7 )

HSP 1 Score: 45.1 bits (105), Expect = 7.6e-05
Identity = 32/88 (36.36%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 78  KNHPFHGPSSRRTEMAMMFGREMFME---LELLHESFPGLSDQSITEVYFANKGDLDAAI 137
           + +PF G S       M+      ME   ++ L   FPG + +S+ EVYFAN  DL   I
Sbjct: 192 ERNPFSGKSRHGFVNDMITESPGDMEVNPVDFLASQFPGFAAESLAEVYFANGCDLQLTI 251

Query: 138 DMLNQLE-------NKHSADFEYAPQSL 156
           +ML QLE       N++ +   YAP SL
Sbjct: 252 EMLTQLELQVDGGLNQNISPKTYAPPSL 279

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g04450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQH9	1.6e-15	36.31	Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3...	[more]
Q9LYE5	1.9e-13	34.52	Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cp4.1LG02g04450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524390.1	1.30e-136	100.00	polyadenylate-binding protein-interacting protein 6-like [Cucurbita pepo subsp. ...	[more]
XP_022941292.1	7.55e-136	98.96	polyadenylate-binding protein-interacting protein 6-like [Cucurbita moschata]	[more]
KAG7031819.1	1.85e-135	99.48	Polyadenylate-binding protein-interacting protein 6, partial [Cucurbita argyrosp...	[more]
XP_022981982.1	2.53e-134	97.92	polyadenylate-binding protein-interacting protein 6-like [Cucurbita maxima]	[more]
KAG6608180.1	2.10e-119	98.43	Translocon at the inner envelope membrane of chloroplasts 236, partial [Cucurbit...	[more]

BLAST of Cp4.1LG02g04450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FM20	3.65e-136	98.96	polyadenylate-binding protein-interacting protein 6-like OS=Cucurbita moschata O...	[more]
A0A6J1IVG0	1.22e-134	97.92	polyadenylate-binding protein-interacting protein 6-like OS=Cucurbita maxima OX=...	[more]
A0A1S3CR41	9.46e-80	65.82	polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A5A7TBQ8	2.65e-79	65.82	Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa ...	[more]
A0A0A0LHC3	7.73e-79	67.68	CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV...	[more]

BLAST of Cp4.1LG02g04450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25540.1	1.1e-16	36.31	CTC-interacting domain 6	[more]
AT5G11440.1	1.4e-14	34.52	CTC-interacting domain 5	[more]
AT2G26280.1	7.6e-05	36.36	CTC-interacting domain 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003892	Ubiquitin system component CUE	PFAM	PF02845	CUE	coord: 104..139 e-value: 4.5E-6 score: 26.3
IPR003892	Ubiquitin system component CUE	PROSITE	PS51140	CUE	coord: 99..142 score: 13.47658
None	No IPR available	GENE3D	1.10.8.10		coord: 92..146 e-value: 1.0E-6 score: 30.2
None	No IPR available	PANTHER	PTHR37252:SF3	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6	coord: 1..190
IPR038981	Polyadenylate-binding protein-interacting protein 5/6	PANTHER	PTHR37252	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6	coord: 1..190
IPR041806	Polyadenylate-binding protein-interacting protein 5/6/7, CUE domain	CDD	cd14371	CUE_CID7_like	coord: 102..143 e-value: 1.40177E-16 score: 68.0552
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 104..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g04450.1	Cp4.1LG02g04450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0005515	protein binding