Cp4.1LG02g04180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACCCACCCTCCCTTTTCTCCCTTCTGTTTATTTGGCCATGATTCTCCACACCCCTTTTCCCAAACTCCATACCTGCTACCCATTTTGGAGCTTCTCTCTGCCAGGATGCCCCCAAGACAAGGCTCTAGGCCTTTTGAATGTGTGAGACGAGCTTGGCATTGTGAAAGACATCAACCCATTAGAGGTTCTCTCATTCAAGAGATTTTCAGGTTCATTTTCCCCCCCTTTTCCTTTTCAGTATGTAGCTTGTGTTCTTGTTTCTTTTGGTTGAATATCTGATCTGGGTTTTGTGGGTTTTGTGGGTTTTGTTGGGTTTTGTTGGGTTTTGTTGGGTTTTGTTGGGTTTTGTGGGTTTAGGGTTGTGAATCAAGTTCATTGCCCTGCTACCAAGAAGAACAAGGAATGGCAAGAGAAACTCCCCATTGTTGTTCTTAAAGCTGAGGAAATTCTGTATTCTAAAGCTGATTCTGAGGTTAGGCCCTCTCTCTTTCCATTCTTGAAGCTATCTGTTCCTTGTTGCTTGGTGCATGAATGCCATGTTATTCTGTGTTCTATAGATCCCTATAGTTTGTAATTTCAAAAGGTTATAAACTAGTTTGTGTAACCAAAGCTATGGAAGTTCATACACCAAAATAAGCTCACACTGTTCATCTTTGTGCACCTGCCACAGGCTGAATACATGGATATTACTACACTATGGACCCGAATAAACGAAGCGATTAATACGATAATTCGGCTCGATGGGGACACCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGGTGACTGCAATTTGTACTTGTTATTTTGTTTTTGAACAGCTTCTGTATGTTTGTCACTAAGTACTAGATGGTCTCCTCAATGTTGTAGGATGTAGCGATTATTTTTCGAGAAAAGTCGAGATGATTGTAGGGTTTATGTTGTTATGTAGGATTGTTGGAGATCTAGGTTAGTTGTGACACTAACGACTATTGAACACGTAGGTAGTTTGACGTGGGAATATGTGATTTTATTGCAATATCGGAGTTGTTTCTGTAACAGTTGTCTCGTAGGATTAGTTGACATGATTGTAGAGTAAGACTGTTGCTTCGTAGGATGATTCGAGATATACTTAGTCTGGTTGAGATGGTATGGGACCTTCAAATGGGGATTCCCCGACCCGAACCCCGATTCTCCGAAACGGGGAATGGGGTGGGGACGGGATGATGAACTATGGAGATAGGGATGGGGAGTGCATCTCCGCCCCGCCCCGCCCCGCCCCATTGCCATCCCTATGCCTATGGTTATCAATATATAGGCAATTGTCAATGGAACTCTGTGATTTTGTGCAATATTAGGATAGTATCTGAAACTTAGCTTGAAGATTATTGGTTCTAATTCCTAATCTTTTGTAAAACAAACTTTGTCAGCTGCTCTCTATTTGGGTTGCACGCCGAGACGATCGTCGAGGAGTAACCGAGGTAGTAACCTGAGGGGCTACCTTACTTCCTGCTCTCCACAAGTCCTAGAAACATCATCTCACTACATCAACACCATTAGACCAGCTGTTCTGTGTTCATCTTGTACCATACCTGATGCCAGACCGAAAAGCCAAATCCATGTCGGTAATCCCATCGGAGTTAGCACGAACTCGAAATCCTCGACCGTATATAAGAACATTTGGCCATCAATCAGTAGCCAACAGTTCCTTACAGAGACTGTTTCAGGATGGAACATGTTTTCTTTGTGTCCATTGTACAATGGAAGCAATCAGCACGAGCCCGGTATCAATATCCAACCTATGCCCCTCTACAACGATCCGAGTTTCTCTGTTCCAGCTCCGTTTAAGTACTTCCATTCCAGTGAGCTGATTGCTGCAAGGAACAACAAAGTTGATTCTGTTAATACTCTTCACGAGCAACAGAAAACAGCCTGCAATCTATCGTTGCGGTTGGGTCCTCTCTCCATTCCACATCCAAGCATGAACAACGGTCGATCCAAGTCGATCACAGACATCGGTGCTAACAACTCTCAAAACCAGATAACGAGTTGTTCCGGTCACCCGTTCCAACTAGACAAAACGCTTCCTTTCTTTCCTCTCCATGTTACATTAGATTCCCATTTGAAGGAGCAGAGTTTCAAGATGGACATTTAGACTCGAAGCCATAAATTAGGAAAAAAACAAGAACAAGAAAGGGACTTGGAAGCAGCTAGCAAACCATGTTAAGATGTTGTTGTGTTGTCTCTTTCGATTTTCCCGTGACGTTCCCGTGCTTGCTGTTAGTAGAAAACCGTAGGACGTTTAGACATTTATCACCTATGTTACTGCTATAATCGAGCTATGTCGATCCAATGTAATCTCGTGTTTGTTGAAGTGTTAACACCAATGGTTTGAATGAAGATAATGAACTCTTTTGCATTTAAGCTCTCCACAAATAATGGAGTTTGTGGGGCTTAAACTTTCAAGCACAAGAGCCATCAAGTTGACAGTGTTCCAAAGACTCTTGGTAGAATTTGATGAAGTGGGGAATATTTTTGGTATATAATTAAGGACATAGGCCTTTCGATTTAGACGTTTCGGGCAGGTTTAGACTCGCTCGAAGTAACTCGAAAGAGCTTCAACATTGAT CACCCACCCTCCCTTTTCTCCCTTCTGTTTATTTGGCCATGATTCTCCACACCCCTTTTCCCAAACTCCATACCTGCTACCCATTTTGGAGCTTCTCTCTGCCAGGATGCCCCCAAGACAAGGCTCTAGGCCTTTTGAATGTGTGAGACGAGCTTGGCATTGTGAAAGACATCAACCCATTAGAGGTTCTCTCATTCAAGAGATTTTCAGGGTTGTGAATCAAGTTCATTGCCCTGCTACCAAGAAGAACAAGGAATGGCAAGAGAAACTCCCCATTGTTGTTCTTAAAGCTGAGGAAATTCTGTATTCTAAAGCTGATTCTGAGGCTGAATACATGGATATTACTACACTATGGACCCGAATAAACGAAGCGATTAATACGATAATTCGGCTCGATGGGGACACCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGCTGCTCTCTATTTGGGTTGCACGCCGAGACGATCGTCGAGGAGTAACCGAGGTAGTAACCTGAGGGGCTACCTTACTTCCTGCTCTCCACAAGTCCTAGAAACATCATCTCACTACATCAACACCATTAGACCAGCTGTTCTGTGTTCATCTTGTACCATACCTGATGCCAGACCGAAAAGCCAAATCCATGTCGGTAATCCCATCGGAGTTAGCACGAACTCGAAATCCTCGACCGTATATAAGAACATTTGGCCATCAATCAGTAGCCAACAGTTCCTTACAGAGACTGTTTCAGGATGGAACATGTTTTCTTTGTGTCCATTGTACAATGGAAGCAATCAGCACGAGCCCGGTATCAATATCCAACCTATGCCCCTCTACAACGATCCGAGTTTCTCTGTTCCAGCTCCGTTTAAGTACTTCCATTCCAGTGAGCTGATTGCTGCAAGGAACAACAAAGTTGATTCTGTTAATACTCTTCACGAGCAACAGAAAACAGCCTGCAATCTATCGTTGCGGTTGGGTCCTCTCTCCATTCCACATCCAAGCATGAACAACGGTCGATCCAAGTCGATCACAGACATCGGTGCTAACAACTCTCAAAACCAGATAACGAGTTGTTCCGGTCACCCGTTCCAACTAGACAAAACGCTTCCTTTCTTTCCTCTCCATGTTACATTAGATTCCCATTTGAAGGAGCAGAGTTTCAAGATGGACATTTAGACTCGAAGCCATAAATTAGGAAAAAAACAAGAACAAGAAAGGGACTTGGAAGCAGCTAGCAAACCATGTTAAGATGTTGTTGTGTTGTCTCTTTCGATTTTCCCGTGACGTTCCCGTGCTTGCTGTTAGTAGAAAACCGTAGGACGTTTAGACATTTATCACCTATGTTACTGCTATAATCGAGCTATGTCGATCCAATGTAATCTCGTGTTTGTTGAAGTGTTAACACCAATGGTTTGAATGAAGATAATGAACTCTTTTGCATTTAAGCTCTCCACAAATAATGGAGTTTGTGGGGCTTAAACTTTCAAGCACAAGAGCCATCAAGTTGACAGTGTTCCAAAGACTCTTGGTAGAATTTGATGAAGTGGGGAATATTTTTGGTATATAATTAAGGACATAGGCCTTTCGATTTAGACGTTTCGGGCAGGTTTAGACTCGCTCGAAGTAACTCGAAAGAGCTTCAACATTGAT ATGCCCCCAAGACAAGGCTCTAGGCCTTTTGAATGTGTGAGACGAGCTTGGCATTGTGAAAGACATCAACCCATTAGAGGTTCTCTCATTCAAGAGATTTTCAGGGTTGTGAATCAAGTTCATTGCCCTGCTACCAAGAAGAACAAGGAATGGCAAGAGAAACTCCCCATTGTTGTTCTTAAAGCTGAGGAAATTCTGTATTCTAAAGCTGATTCTGAGGCTGAATACATGGATATTACTACACTATGGACCCGAATAAACGAAGCGATTAATACGATAATTCGGCTCGATGGGGACACCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGCTGCTCTCTATTTGGGTTGCACGCCGAGACGATCGTCGAGGAGTAACCGAGGTAGTAACCTGAGGGGCTACCTTACTTCCTGCTCTCCACAAGTCCTAGAAACATCATCTCACTACATCAACACCATTAGACCAGCTGTTCTGTGTTCATCTTGTACCATACCTGATGCCAGACCGAAAAGCCAAATCCATGTCGGTAATCCCATCGGAGTTAGCACGAACTCGAAATCCTCGACCGTATATAAGAACATTTGGCCATCAATCAGTAGCCAACAGTTCCTTACAGAGACTGTTTCAGGATGGAACATGTTTTCTTTGTGTCCATTGTACAATGGAAGCAATCAGCACGAGCCCGGTATCAATATCCAACCTATGCCCCTCTACAACGATCCGAGTTTCTCTGTTCCAGCTCCGTTTAAGTACTTCCATTCCAGTGAGCTGATTGCTGCAAGGAACAACAAAGTTGATTCTGTTAATACTCTTCACGAGCAACAGAAAACAGCCTGCAATCTATCGTTGCGGTTGGGTCCTCTCTCCATTCCACATCCAAGCATGAACAACGGTCGATCCAAGTCGATCACAGACATCGGTGCTAACAACTCTCAAAACCAGATAACGAGTTGTTCCGGTCACCCGTTCCAACTAGACAAAACGCTTCCTTTCTTTCCTCTCCATGTTACATTAGATTCCCATTTGAAGGAGCAGAGTTTCAAGATGGACATTTAG MPPRQGSRPFECVRRAWHCERHQPIRGSLIQEIFRVVNQVHCPATKKNKEWQEKLPIVVLKAEEILYSKADSEAEYMDITTLWTRINEAINTIIRLDGDTETGEFLHPCIEAALYLGCTPRRSSRSNRGSNLRGYLTSCSPQVLETSSHYINTIRPAVLCSSCTIPDARPKSQIHVGNPIGVSTNSKSSTVYKNIWPSISSQQFLTETVSGWNMFSLCPLYNGSNQHEPGINIQPMPLYNDPSFSVPAPFKYFHSSELIAARNNKVDSVNTLHEQQKTACNLSLRLGPLSIPHPSMNNGRSKSITDIGANNSQNQITSCSGHPFQLDKTLPFFPLHVTLDSHLKEQSFKMDI Homology
BLAST of Cp4.1LG02g04180 vs. NCBI nr
Match: XP_023524265.1 (uncharacterized protein LOC111788219 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 727 bits (1877), Expect = 6.13e-265 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. NCBI nr
Match: KAG6608157.1 (hypothetical protein SDJN03_01499, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 708 bits (1828), Expect = 1.81e-257 Identity = 344/352 (97.73%), Postives = 348/352 (98.86%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. NCBI nr
Match: XP_022940025.1 (uncharacterized protein LOC111445784 [Cucurbita moschata]) HSP 1 Score: 707 bits (1825), Expect = 5.19e-257 Identity = 343/352 (97.44%), Postives = 348/352 (98.86%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. NCBI nr
Match: KAG7031797.1 (hypothetical protein SDJN02_05838, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 708 bits (1828), Expect = 7.55e-257 Identity = 344/352 (97.73%), Postives = 348/352 (98.86%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. NCBI nr
Match: XP_022982029.1 (uncharacterized protein LOC111481002 [Cucurbita maxima]) HSP 1 Score: 697 bits (1800), Expect = 3.36e-253 Identity = 339/352 (96.31%), Postives = 345/352 (98.01%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. ExPASy TrEMBL
Match: A0A6J1FPE4 (uncharacterized protein LOC111445784 OS=Cucurbita moschata OX=3662 GN=LOC111445784 PE=4 SV=1) HSP 1 Score: 707 bits (1825), Expect = 2.51e-257 Identity = 343/352 (97.44%), Postives = 348/352 (98.86%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. ExPASy TrEMBL
Match: A0A6J1J3G1 (uncharacterized protein LOC111481002 OS=Cucurbita maxima OX=3661 GN=LOC111481002 PE=4 SV=1) HSP 1 Score: 697 bits (1800), Expect = 1.63e-253 Identity = 339/352 (96.31%), Postives = 345/352 (98.01%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. ExPASy TrEMBL
Match: A0A0A0LHA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878170 PE=4 SV=1) HSP 1 Score: 501 bits (1291), Expect = 6.12e-176 Identity = 256/355 (72.11%), Postives = 288/355 (81.13%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. ExPASy TrEMBL
Match: A0A5A7T5Q7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003710 PE=4 SV=1) HSP 1 Score: 482 bits (1240), Expect = 3.26e-168 Identity = 247/355 (69.58%), Postives = 283/355 (79.72%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. ExPASy TrEMBL
Match: A0A5D3E5M9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007480 PE=4 SV=1) HSP 1 Score: 480 bits (1236), Expect = 1.32e-167 Identity = 246/355 (69.30%), Postives = 282/355 (79.44%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. TAIR 10
Match: AT4G32295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 209.5 bits (532), Expect = 4.3e-54 Identity = 109/193 (56.48%), Postives = 133/193 (68.91%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. TAIR 10
Match: AT3G24150.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 197.6 bits (501), Expect = 1.7e-50 Identity = 125/320 (39.06%), Postives = 170/320 (53.12%), Query Frame = 0
BLAST of Cp4.1LG02g04180 vs. TAIR 10
Match: AT4G32295.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 109.8 bits (273), Expect = 4.6e-24 Identity = 66/130 (50.77%), Postives = 78/130 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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