Cp4.1LG02g04010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g04010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	neurochondrin isoform X1
Location	Cp4.1LG02: 2653964 .. 2655580 (-)
RNA-Seq Expression	Cp4.1LG02g04010
Synteny	Cp4.1LG02g04010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCCGGGCTTTGGAATCGGAGGCGGGAGACCTCTCGTAAACCATAACATCGAAGAGAAGCAGCGAAGACGAAGGAAAGAGGTTACCGCTTGAATACTCTTCTCCATTTGAATTCTCAAGTTCATTCTCCAGTCTCGAGTTCTCTGCTTTCATGGTGAATGTCTTCCTTTCTTTTTTTCACGAACGCAGTATTGCATTTCTTAGTATTCTCACTGTACGCACATTTGTTCTTGTTTTACTATTTCGTAGGAGTTACAGCAGGAGCAAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGACGAGCAGCGTCTTGCTGGCCTTTTCTTAGTCTCTAAAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGAGAAGTTTCTTGGTATGTTCCTTAACACTTCGGTATCCGCGGTAAACTTGCACATATATGTTCTCAAAATAGCGTTTAAAACTTCTAGGCACTGGTAAGGAATTATTAGTTGACCTGGAGAGGAGAATTGCGATGTGTATTTGTAGCTGTATGTTAGGATTTTGGCTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCTGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTGTTGATTATTGACGGTAACTAGAACGATCACTTATCCTCCTTATTCCTTTGACTATTGATGTTCTGTTGAGATAATGTATTAGATTGATCACAAGGCACGACATCAGATTTGCAATATAATTATTTACTTCATTGTCCTGAATTAACCACGAATTCACTTCTGCTCTGTGGATTTAGGTTCTTACCATTAGGAAATAATCGATTTAATCGTGGACAAGATTTTCCAGAGAGAGATATACATTATGCTTTCTTTTCTGGTCTGAGCTCCTTAATCGATGTTTCTCTTATTGTTTATGCAAGGTCAGGATCTTCCGTTTTGGAGGAGCGTTTTGAATTTTTATATCTTGTATCAACTGCTTCCGTTGTTGGAGTCTCCATTCTATATAAATCTGGATTCTGAAATTAATGGTGCTAACAGTAAAGATTACGTGCGTAGTTTCTTGTCTAATGCATCAATTGTAGGTTGATTTATCCAGTTGGACATTCTTTTTGGTTTTAATTATCTTTCACTAATTGCAGAATTTTCTGCCATGTTAGTTCTTGGTTTTTTCATAATTACAGATTGTTATTGTTTGGCTGATGTGTTATATGTTTCAGACATCACGTTAAAATGTCTTTCGTGTCTAGTGCCCTCCAATGTTTGGTCCAAACATATGCGTGATGGAATTTCAGCTATCCTTCACGCATTTTCTTCAGGCTCTTAGTTTGGCTGTGTCTATGGTGTCTATTCTAGGAGAAGTTTGGCTGATAGGCGAAATTGAATTACCTGATGTTCGAGATCCTATTCCATCCGACAGGTATTCAGTGATTGCTATCAGTAATGATGCTTTATTAACTTCTCATGTATATTCTCAGATGTCTAATACTTGTCTTAGAGCAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCCATATGAAATATGATGCTTGA

mRNA sequence

TTTCCCGGGCTTTGGAATCGGAGGCGGGAGACCTCTCGTAAACCATAACATCGAAGAGAAGCAGCGAAGACGAAGGAAAGAGGTTACCGCTTGAATACTCTTCTCCATTTGAATTCTCAAGTTCATTCTCCAGTCTCGAGTTCTCTGCTTTCATGGAGTTACAGCAGGAGCAAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGACGAGCAGCGTCTTGCTGGCCTTTTCTTAGTCTCTAAAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGAGAAGTTTCTTGGTATGTTCCTTAACACTTCGGTATCCGCGGATTTTGGCTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCTGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTGTTGATTATTGACGGTCAGGATCTTCCGTTTTGGAGGAGCGTTTTGAATTTTTATATCTTGTATCAACTGCTTCCGTTGTTGGAGTCTCCATTCTATATAAATCTGGATTCTGAAATTAATGGTGCTAACAGTAAAGATTACGTGCGTAGTTTCTTGTCTAATGCATCAATTGCTCTTAGTTTGGCTGTGTCTATGGTGTCTATTCTAGGAGAAGTTTGGCTGATAGGCGAAATTGAATTACCTGATGTTCGAGATCCTATTCCATCCGACAGATGTCTAATACTTGTCTTAGAGCAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCCATATGAAATATGATGCTTGA

Coding sequence (CDS)

ATGGAGTTACAGCAGGAGCAAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGACGAGCAGCGTCTTGCTGGCCTTTTCTTAGTCTCTAAAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGAGAAGTTTCTTGGTATGTTCCTTAACACTTCGGTATCCGCGGATTTTGGCTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCTGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTGTTGATTATTGACGGTCAGGATCTTCCGTTTTGGAGGAGCGTTTTGAATTTTTATATCTTGTATCAACTGCTTCCGTTGTTGGAGTCTCCATTCTATATAAATCTGGATTCTGAAATTAATGGTGCTAACAGTAAAGATTACGTGCGTAGTTTCTTGTCTAATGCATCAATTGCTCTTAGTTTGGCTGTGTCTATGGTGTCTATTCTAGGAGAAGTTTGGCTGATAGGCGAAATTGAATTACCTGATGTTCGAGATCCTATTCCATCCGACAGATGTCTAATACTTGTCTTAGAGCAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCCATATGAAATATGATGCTTGA

Protein sequence

MELQQEQTPSESIEDSLKLLKDEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLGMFLNTSVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLIIDGQDLPFWRSVLNFYILYQLLPLLESPFYINLDSEINGANSKDYVRSFLSNASIALSLAVSMVSILGEVWLIGEIELPDVRDPIPSDRCLILVLEQSRAEIGMVLNELAHMKYDA

Homology

[Close]

BLAST of Cp4.1LG02g04010 vs. NCBI nr
Match: KAG7031777.1 (hypothetical protein SDJN02_05818, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235 bits (600), Expect = 1.44e-72
Identity = 150/254 (59.06%), Postives = 165/254 (64.96%), Query Frame = 0


Query: 1   MELQQEQTPSESIEDSLKLLKDEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFL---- 60
           MELQQE+TPSESIEDSLKLLKDEQRLAGLFLV+ ICEVDDRASLTRVYYAVG KFL    
Sbjct: 27  MELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDRLL 86

Query: 61  --GMFLNTSVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLII------ 120
             GMFL+T VSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLL+       
Sbjct: 87  RTGMFLSTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQFF 146

Query: 121 --------DGQDLPFWRSVLNFYILYQLLPLLESPFYINLDSEINGANSKDYVRSFLSNA 180
                    GQD P     +++     L  L++    +   S  +    +      +S A
Sbjct: 147 PLGNNRFNRGQDFP--ERDIHYAFFSGLSSLIDVSLIVYARSGSSVLEERFEFLYLVSTA 206

Query: 181 SI-----------------------ALSLAVSMVSILGEVWLIGEIELPDVRDPIPSDRC 211
           S+                       ALSLAVSM        LIGEIELPDVRDPIPSDRC
Sbjct: 207 SVCPPMFGPNICVMEFQLSFTHFLQALSLAVSM--------LIGEIELPDVRDPIPSDRC 266

[Close]

BLAST of Cp4.1LG02g04010 vs. NCBI nr
Match: KAG6608140.1 (hypothetical protein SDJN03_01482, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221 bits (562), Expect = 1.87e-69
Identity = 137/229 (59.83%), Postives = 152/229 (66.38%), Query Frame = 0


Query: 1   MELQQEQTPSESIEDSLKLLKDEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFL---- 60
           MELQQE+TPSESIEDSLKLLKDEQRLAGLFLV+ ICEVDDRASLTRVYYAVG KFL    
Sbjct: 3   MELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDRLL 62

Query: 61  --GMFLNTSVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLIIDGQDLP 120
             GMFLNT VSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLL+       
Sbjct: 63  RTGMFLNTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVA------ 122

Query: 121 FWRSVLNFYILYQLLPLLESPFYINLDSEINGANSKDYVRSFLSNASIALSLAVSMVSIL 180
                     L+Q  PL  + F    D        +D   +F S  S  + +++ + +  
Sbjct: 123 ---------FLHQFFPLGNNRFNRGQDFP-----ERDIHYAFFSGLSSLIDVSLIVYA-- 182

Query: 181 GEVWLIGEIELPDVRDPIPSDRCLILVLEQSRAEIGMVLNELAHMKYDA 223
                                RCLILVLE+SRAEIGMVLNELA+MKYDA
Sbjct: 183 ---------------------RCLILVLEKSRAEIGMVLNELAYMKYDA 188

[Close]

BLAST of Cp4.1LG02g04010 vs. NCBI nr
Match: XP_008452895.1 (PREDICTED: neurochondrin isoform X4 [Cucumis melo])

HSP 1 Score: 152 bits (385), Expect = 1.94e-39
Identity = 129/330 (39.09%), Postives = 159/330 (48.18%), Query Frame = 0


Query: 1   MELQQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLG 60
           MELQQEQTPS SIED LKLLK   DEQRLAGLFLV+KIC+VDD ASL+RVY AVG KFL 
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVAKICKVDDLASLSRVYNAVGAKFLE 60

Query: 61  MFLNTSVSADFG------------------LAAFFHVPEISGDR---------------- 120
             L T +                       LAAF HVPEI+                   
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQ 120

Query: 121 --------------LGDSADTRGLIQ-----PMRRLSVYFLLIIDGQDLP---------- 180
                         L  +A   G+        ++ ++ + L + DG +L           
Sbjct: 121 SGSSVLEECLEFLYLVSTASDAGVTTLYESGSLKIIASWMLSMPDGPNLMKISMQLVQLI 180

Query: 181 FWRSVLNFYIL-------------------------YQLLPLLESPFYINLD-------- 223
             +  L+  I+                         ++ L LL +    NL         
Sbjct: 181 ISKISLDIIIIDSLPELSDIVVAIARQFGVAHDAMKFEALRLLSAILSSNLTPLFETLRQ 240

[Close]

BLAST of Cp4.1LG02g04010 vs. NCBI nr
Match: XP_038899675.1 (neurochondrin isoform X3 [Benincasa hispida])

HSP 1 Score: 153 bits (387), Expect = 3.43e-39
Identity = 129/333 (38.74%), Postives = 161/333 (48.35%), Query Frame = 0


Query: 1   MELQQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLG 60
           MELQQEQTPS SIED LKLLK   DEQRLAGLFLV+KIC+VDD ASL+RVY A+G KFL 
Sbjct: 1   MELQQEQTPSGSIEDCLKLLKGEKDEQRLAGLFLVTKICKVDDLASLSRVYNAIGAKFLD 60

Query: 61  MFLNTSVSADFG------------------LAAFFHVPEISG------------DRLGDS 120
             L T +                       LAAF HVPEI+             + L + 
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQ 120

Query: 121 ADTRGLIQ-----------------------PMRRLSVYFLLIIDGQD------------ 180
           + +  L +                        ++ L+ + L + DG +            
Sbjct: 121 SGSSVLEECLEFLYLVLTTSDAGVTALYGSGSLKILASWMLTMADGSNPMKISMRLVQLI 180

Query: 181 -------------LPFWRSVLNFYIL-------------YQLLPLLESPFYINLD----- 223
                        LP    V N  ++             ++ L LL +    NL      
Sbjct: 181 ISKISLDVIVTNCLP---EVSNIVVVIARQFGVSHDAMKFEALRLLSATLSSNLTPLYDA 240

[Close]

BLAST of Cp4.1LG02g04010 vs. NCBI nr
Match: XP_008452894.1 (PREDICTED: neurochondrin isoform X3 [Cucumis melo])

HSP 1 Score: 152 bits (385), Expect = 6.44e-39
Identity = 129/330 (39.09%), Postives = 159/330 (48.18%), Query Frame = 0


Query: 1   MELQQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLG 60
           MELQQEQTPS SIED LKLLK   DEQRLAGLFLV+KIC+VDD ASL+RVY AVG KFL 
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVAKICKVDDLASLSRVYNAVGAKFLE 60

Query: 61  MFLNTSVSADFG------------------LAAFFHVPEISGDR---------------- 120
             L T +                       LAAF HVPEI+                   
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQ 120

Query: 121 --------------LGDSADTRGLIQ-----PMRRLSVYFLLIIDGQDLP---------- 180
                         L  +A   G+        ++ ++ + L + DG +L           
Sbjct: 121 SGSSVLEECLEFLYLVSTASDAGVTTLYESGSLKIIASWMLSMPDGPNLMKISMQLVQLI 180

Query: 181 FWRSVLNFYIL-------------------------YQLLPLLESPFYINLD-------- 223
             +  L+  I+                         ++ L LL +    NL         
Sbjct: 181 ISKISLDIIIIDSLPELSDIVVAIARQFGVAHDAMKFEALRLLSAILSSNLTPLFETLRQ 240

[Close]

BLAST of Cp4.1LG02g04010 vs. ExPASy TrEMBL
Match: A0A1S3BUW9 (neurochondrin isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 9.40e-40
Identity = 129/330 (39.09%), Postives = 159/330 (48.18%), Query Frame = 0


Query: 1   MELQQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLG 60
           MELQQEQTPS SIED LKLLK   DEQRLAGLFLV+KIC+VDD ASL+RVY AVG KFL 
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVAKICKVDDLASLSRVYNAVGAKFLE 60

Query: 61  MFLNTSVSADFG------------------LAAFFHVPEISGDR---------------- 120
             L T +                       LAAF HVPEI+                   
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQ 120

Query: 121 --------------LGDSADTRGLIQ-----PMRRLSVYFLLIIDGQDLP---------- 180
                         L  +A   G+        ++ ++ + L + DG +L           
Sbjct: 121 SGSSVLEECLEFLYLVSTASDAGVTTLYESGSLKIIASWMLSMPDGPNLMKISMQLVQLI 180

Query: 181 FWRSVLNFYIL-------------------------YQLLPLLESPFYINLD-------- 223
             +  L+  I+                         ++ L LL +    NL         
Sbjct: 181 ISKISLDIIIIDSLPELSDIVVAIARQFGVAHDAMKFEALRLLSAILSSNLTPLFETLRQ 240

[Close]

BLAST of Cp4.1LG02g04010 vs. ExPASy TrEMBL
Match: A0A1S3BUZ3 (neurochondrin isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 3.12e-39
Identity = 129/330 (39.09%), Postives = 159/330 (48.18%), Query Frame = 0


Query: 1   MELQQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLG 60
           MELQQEQTPS SIED LKLLK   DEQRLAGLFLV+KIC+VDD ASL+RVY AVG KFL 
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVAKICKVDDLASLSRVYNAVGAKFLE 60

Query: 61  MFLNTSVSADFG------------------LAAFFHVPEISGDR---------------- 120
             L T +                       LAAF HVPEI+                   
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQ 120

Query: 121 --------------LGDSADTRGLIQ-----PMRRLSVYFLLIIDGQDLP---------- 180
                         L  +A   G+        ++ ++ + L + DG +L           
Sbjct: 121 SGSSVLEECLEFLYLVSTASDAGVTTLYESGSLKIIASWMLSMPDGPNLMKISMQLVQLI 180

Query: 181 FWRSVLNFYIL-------------------------YQLLPLLESPFYINLD-------- 223
             +  L+  I+                         ++ L LL +    NL         
Sbjct: 181 ISKISLDIIIIDSLPELSDIVVAIARQFGVAHDAMKFEALRLLSAILSSNLTPLFETLRQ 240

[Close]

BLAST of Cp4.1LG02g04010 vs. ExPASy TrEMBL
Match: A0A1S3BW48 (neurochondrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 3.14e-39
Identity = 129/330 (39.09%), Postives = 159/330 (48.18%), Query Frame = 0


Query: 1   MELQQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLG 60
           MELQQEQTPS SIED LKLLK   DEQRLAGLFLV+KIC+VDD ASL+RVY AVG KFL 
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVAKICKVDDLASLSRVYNAVGAKFLE 60

Query: 61  MFLNTSVSADFG------------------LAAFFHVPEISGDR---------------- 120
             L T +                       LAAF HVPEI+                   
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQ 120

Query: 121 --------------LGDSADTRGLIQ-----PMRRLSVYFLLIIDGQDLP---------- 180
                         L  +A   G+        ++ ++ + L + DG +L           
Sbjct: 121 SGSSVLEECLEFLYLVSTASDAGVTTLYESGSLKIIASWMLSMPDGPNLMKISMQLVQLI 180

Query: 181 FWRSVLNFYIL-------------------------YQLLPLLESPFYINLD-------- 223
             +  L+  I+                         ++ L LL +    NL         
Sbjct: 181 ISKISLDIIIIDSLPELSDIVVAIARQFGVAHDAMKFEALRLLSAILSSNLTPLFETLRQ 240

[Close]

BLAST of Cp4.1LG02g04010 vs. ExPASy TrEMBL
Match: A0A5A7VFZ2 (Neurochondrin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003330 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 2.61e-38
Identity = 128/329 (38.91%), Postives = 158/329 (48.02%), Query Frame = 0


Query: 2   ELQQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLGM 61
           ELQQEQTPS SIED LKLLK   DEQRLAGLFLV+KIC+VDD ASL+RVY AVG KFL  
Sbjct: 81  ELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVAKICKVDDLASLSRVYNAVGAKFLER 140

Query: 62  FLNTSVSADFG------------------LAAFFHVPEISGDR----------------- 121
            L T +                       LAAF HVPEI+                    
Sbjct: 141 LLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQS 200

Query: 122 -------------LGDSADTRGLIQ-----PMRRLSVYFLLIIDGQDLP----------F 181
                        L  +A   G+        ++ ++ + L + DG +L            
Sbjct: 201 GSSVLEECLEFLYLVSTASDAGVTTLYESGSLKIIASWMLSMPDGPNLMKISMQLVQLII 260

Query: 182 WRSVLNFYIL-------------------------YQLLPLLESPFYINLD--------- 223
            +  L+  I+                         ++ L LL +    NL          
Sbjct: 261 SKISLDIIIIDSLPELSDIVVAIARQFGVAHDAMKFEALRLLSAILSSNLTPLFETLRQV 320

[Close]

BLAST of Cp4.1LG02g04010 vs. ExPASy TrEMBL
Match: A0A5D3D8S2 (Neurochondrin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00960 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 6.77e-38
Identity = 128/329 (38.91%), Postives = 157/329 (47.72%), Query Frame = 0


Query: 2   ELQQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLGM 61
           ELQQEQTPS SIED LKLLK   DEQRLAGLFLV+KIC+VDD ASL+RVY AVG KFL  
Sbjct: 81  ELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVAKICKVDDLASLSRVYNAVGAKFLER 140

Query: 62  FLNTSVSADFG------------------LAAFFHVPEISGDR----------------- 121
            L T +                       LAAF HVPEI+                    
Sbjct: 141 LLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQS 200

Query: 122 -------------LGDSADTRGLIQ-----PMRRLSVYFLLIIDGQDLP----------F 181
                        L  +A   G+        ++ ++ + L + DG +L            
Sbjct: 201 GSSVLEECLEFLYLVSTASDAGVTTLYESGSLKIIASWMLSMPDGPNLMKISMQLVQLII 260

Query: 182 WRSVLNFYIL-------------------------YQLLPLLESPFYINLD--------- 223
            +  L+  I+                         ++ L LL +    NL          
Sbjct: 261 SKISLDIIIIDSLPELSDIVVAIARQFGVAHDAMKFEALRLLSAILSSNLTPLFETLRQV 320

[Close]

BLAST of Cp4.1LG02g04010 vs. TAIR 10
Match: AT4G32050.1 (neurochondrin family protein )

HSP 1 Score: 94.7 bits (234), Expect = 9.7e-20
Identity = 98/324 (30.25%), Postives = 134/324 (41.36%), Query Frame = 0


Query: 4   QQEQTPSESIEDSLKLLK---DEQRLAGLFLVSKICEVDDRASLTRVYYAVGEKFLGMFL 63
           Q+E++P  S++D LKLLK   DEQRLAGL LV+K C+ DD  SL +VY AVG  FL    
Sbjct: 6   QEERSP--SLDDCLKLLKGERDEQRLAGLLLVTKFCKNDDIVSLNKVYEAVGTHFLDRLF 65

Query: 64  NTSVSADFG--------------LAAFFHVPEISGDR----------------------- 123
            T   +  G              LAAF  VPEI+                          
Sbjct: 66  RTGSGSGDGVDNRDVYLQISITVLAAFCRVPEIASSEEMVSRIPLILEVMSKGITTNMLE 125

Query: 124 -------LGDSADTRGL-----------IQPM---------------------------- 183
                  L  +A   GL           I P                             
Sbjct: 126 DCYELLYLVSTACEAGLMTLINSGGLRVIAPQMSELPDGSHAMEVAIKILQLLVSKLDCG 185

Query: 184 -----RRLSVYFLLIIDGQDLPFWRSVLNFYILYQLLPLLESPFYINLDSEINGA---NS 224
                R L +  ++    +      + L F  L+ L  +  S +   L   +      N 
Sbjct: 186 SMTIERFLELSLVIAAVARQFAVLHNALKFEALHLLSAVFSSEYSELLHEPLRSMPDNNW 245

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g04010 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g04010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031777.1	1.44e-72	59.06	hypothetical protein SDJN02_05818, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6608140.1	1.87e-69	59.83	hypothetical protein SDJN03_01482, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008452895.1	1.94e-39	39.09	PREDICTED: neurochondrin isoform X4 [Cucumis melo]	[more]
XP_038899675.1	3.43e-39	38.74	neurochondrin isoform X3 [Benincasa hispida]	[more]
XP_008452894.1	6.44e-39	39.09	PREDICTED: neurochondrin isoform X3 [Cucumis melo]	[more]

BLAST of Cp4.1LG02g04010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BUW9	9.40e-40	39.09	neurochondrin isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1	[more]
A0A1S3BUZ3	3.12e-39	39.09	neurochondrin isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1	[more]
A0A1S3BW48	3.14e-39	39.09	neurochondrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1	[more]
A0A5A7VFZ2	2.61e-38	38.91	Neurochondrin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3D8S2	6.77e-38	38.91	Neurochondrin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Cp4.1LG02g04010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32050.1	9.7e-20	30.25	neurochondrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008709	Neurochondrin	PFAM	PF05536	Neurochondrin	coord: 10..64 e-value: 1.0E-8 score: 34.1
IPR008709	Neurochondrin	PANTHER	PTHR13109	NEUROCHONDRIN	coord: 163..215 coord: 4..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g04010.1	Cp4.1LG02g04010.1	mRNA