Cp4.1LG02g03980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g03980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L39
Location	Cp4.1LG02: 2695872 .. 2696864 (-)
RNA-Seq Expression	Cp4.1LG02g03980
Synteny	Cp4.1LG02g03980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGGCTCTACCTTGTGGGCCATGAGTTTCAAATGTTGGCCCAATTAACTTGTAAGAGTGGGAAAAGTTTGGGCTCAACTGCAAGCCCATTTACGAGGTTAGAATCTCGGTTGGGCTGCCCGCGGGCATATCTCGCTTGTCCTTTTCGGTGGAGCATATAAAAACTTGTTCGATACTGATAGGGTTTTCGTTAGACCGCCGTCTGCTTCCAAGTTCGCCGCGGAACACAGGACTCGAAGATGGTACGTATTGTTATTCAACTCTCTGAAGTCTGAACTTCTTGTTTCCGTTAATCTATTGCTGTTCGTCCTTCTCCATTTGATGATTGAAACTGCGAGAGTTTGTGATTCGATTTTCTCATCTCTTTCAATTCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGGTGTTAAGCCTACGCCATTTGAATCGCCATTTTTTCAAGTCTGTGATCTGATTTTGAGTCTTACATTCTGGCGTTCTACTGTCGATTGTTTTTCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTTAATGCTCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAGGACCTATTATTATATTTGCGCAACTGAAATTTAGTTCATCTGATATTTTTGTTATCATTTATACACTGAAGTTTGAAGTAGTTCGGGATAGAATGAATTTTCTGGCAGGCATCATGTCTGTGGCTTAGCAGTTTATCCACATATTCATGGCATTTACTTCTTATTTTGAAGAACTTTAGCGAGCTTGATAGACATTCTTTAAATAATTGATCGAAGTCAAGAGATTTATGGAAACTACTTACATTGACATATCACGATTTTCCACTCCTTAATGAAGTTATGATCGTT

mRNA sequence

ATGGGGTTTTCGTTAGACCGCCGTCTGCTTCCAAGTTCGCCGCGGAACACAGGACTCGAAGATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTTAATGCTCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAGGACCTATTATTATATTTGCGCAACTGAAATTTAGTTCATCTGATATTTTTGTTATCATTTATACACTGAAGTTTGAAGTAGTTCGGGATAGAATGAATTTTCTGGCAGGCATCATGTCTGTGGCTTAGCAGTTTATCCACATATTCATGGCATTTACTTCTTATTTTGAAGAACTTTAGCGAGCTTGATAGACATTCTTTAAATAATTGATCGAAGTCAAGAGATTTATGGAAACTACTTACATTGACATATCACGATTTTCCACTCCTTAATGAAGTTATGATCGTT

Coding sequence (CDS)

ATGGGGTTTTCGTTAGACCGCCGTCTGCTTCCAAGTTCGCCGCGGAACACAGGACTCGAAGATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTTAATGCTCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAGGACCTATTATTATATTTGCGCAACTGA

Protein sequence

MGFSLDRRLLPSSPRNTGLEDAVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRCFRFITLMLIYFEFVKIADISVLKDLLLYLRN

Homology

[Close]

BLAST of Cp4.1LG02g03980 vs. NCBI nr
Match: KAG7031772.1 (hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 3.93e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 23 VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 73
          VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR
Sbjct: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 54

[Close]

BLAST of Cp4.1LG02g03980 vs. NCBI nr
Match: ACU14423.1 (unknown, partial [Glycine max])

HSP 1 Score: 82.8 bits (203), Expect = 3.41e-18
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MGFSLDRRLLPSSPRNTGLEDAVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRK 60
          +GFSL    + SSPR    E+AV+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+
Sbjct: 5  LGFSLTG--VQSSPRRKS-ENAVAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQRE 64

Query: 61 AQALASHQARVLRC 74
          A +LASHQA +LRC
Sbjct: 65 APSLASHQAWILRC 75

[Close]

BLAST of Cp4.1LG02g03980 vs. NCBI nr
Match: VVA11576.1 (unknown partial [Prunus dulcis])

HSP 1 Score: 78.6 bits (192), Expect = 7.60e-16
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   MGFSLDRRLLPSSPRNTGLEDAVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRK 60
           +  SL    LP S        AV QD  NQEEA EEDEAEQA+P+LDP E+RQ++Q+QR+
Sbjct: 58  VNLSLSSPFLPLS--------AVPQDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQ 117

Query: 61  AQALASHQARVLRCF 75
           AQALA HQAR LRCF
Sbjct: 118 AQALAPHQARFLRCF 124

[Close]

BLAST of Cp4.1LG02g03980 vs. NCBI nr
Match: PKA65509.1 (hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica])

HSP 1 Score: 71.6 bits (174), Expect = 1.53e-13
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 20 EDAVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 73
          EDAV+QDFQ++EEA EEDEAEQA+P LDP E+ ++ QIQR+AQALA H+ARVL+
Sbjct: 26 EDAVAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQALAPHKARVLK 79

[Close]

BLAST of Cp4.1LG02g03980 vs. NCBI nr
Match: KAF5748142.1 (hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii])

HSP 1 Score: 68.2 bits (165), Expect = 2.58e-12
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 23 VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH 67
          VSQD Q+QEEAREEDEAEQAYP LDP ENRQY Q+Q +AQALAS+
Sbjct: 53 VSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97

[Close]

BLAST of Cp4.1LG02g03980 vs. ExPASy TrEMBL
Match: C6SYV0 (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.65e-18
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MGFSLDRRLLPSSPRNTGLEDAVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRK 60
          +GFSL    + SSPR    E+AV+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+
Sbjct: 5  LGFSLTG--VQSSPRRKS-ENAVAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQRE 64

Query: 61 AQALASHQARVLRC 74
          A +LASHQA +LRC
Sbjct: 65 APSLASHQAWILRC 75

[Close]

BLAST of Cp4.1LG02g03980 vs. ExPASy TrEMBL
Match: A0A5E4E8H2 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.68e-16
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   MGFSLDRRLLPSSPRNTGLEDAVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRK 60
           +  SL    LP S        AV QD  NQEEA EEDEAEQA+P+LDP E+RQ++Q+QR+
Sbjct: 58  VNLSLSSPFLPLS--------AVPQDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQ 117

Query: 61  AQALASHQARVLRCF 75
           AQALA HQAR LRCF
Sbjct: 118 AQALAPHQARFLRCF 124

[Close]

BLAST of Cp4.1LG02g03980 vs. ExPASy TrEMBL
Match: A0A2I0BCI7 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.42e-14
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 20 EDAVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 73
          EDAV+QDFQ++EEA EEDEAEQA+P LDP E+ ++ QIQR+AQALA H+ARVL+
Sbjct: 26 EDAVAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQALAPHKARVLK 79

[Close]

BLAST of Cp4.1LG02g03980 vs. ExPASy TrEMBL
Match: A0A6N2M5H5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS308422 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.04e-13
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 22 AVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL 72
          AV+QD Q+QEEA EEDEAEQA+P+LDP E+RQ++Q+Q +AQALA +QARVL
Sbjct: 21 AVTQDLQDQEEAGEEDEAEQAHPSLDPHEDRQHHQVQCEAQALAPYQARVL 71

[Close]

BLAST of Cp4.1LG02g03980 vs. ExPASy TrEMBL
Match: A0A7J7DP31 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.25e-12
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 23 VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH 67
          VSQD Q+QEEAREEDEAEQAYP LDP ENRQY Q+Q +AQALAS+
Sbjct: 53 VSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g03980 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g03980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031772.1	3.93e-24	100.00	hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyro...	[more]
ACU14423.1	3.41e-18	63.51	unknown, partial [Glycine max]	[more]
VVA11576.1	7.60e-16	60.00	unknown partial [Prunus dulcis]	[more]
PKA65509.1	1.53e-13	70.37	hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica]	[more]
KAF5748142.1	2.58e-12	80.00	hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii]	[more]

BLAST of Cp4.1LG02g03980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
C6SYV0	1.65e-18	63.51	Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
A0A5E4E8H2	3.68e-16	60.00	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1	[more]
A0A2I0BCI7	7.42e-14	70.37	Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 P...	[more]
A0A6N2M5H5	5.04e-13	70.59	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS308422 PE=4 SV=...	[more]
A0A7J7DP31	1.25e-12	80.00	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 ...	[more]

BLAST of Cp4.1LG02g03980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g03980.1	Cp4.1LG02g03980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0120029	proton export across plasma membrane
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004069	L-aspartate:2-oxoglutarate aminotransferase activity
molecular_function	GO:0008553	P-type proton-exporting transporter activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0003735	structural constituent of ribosome