Cp4.1LG02g02960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g02960
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptioncarbon catabolite repressor protein 4 homolog 4
LocationCp4.1LG02: 3520978 .. 3524102 (+)
RNA-Seq ExpressionCp4.1LG02g02960
SyntenyCp4.1LG02g02960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCGCGCCATCGAATCGGTCGATTTTGCATTTACATATTTAAAGATTTTCCGCGGCTGAAAGCTATTATGGCTCGCAGTTGCAGCTTTCTTCTCTCTCCCGCTGTCTAAGCTGGTAATGTGATCTCTTTTTCTGAAGCTACAATTTAATTTTTGGATTATGTTATTGAAATGAATTGATTCTAGTATTGTTCTTGAATCCTTCTTCGACTATGTCCGCTTCCGGAGGCATCGCGGATTGACGCACCGATTTAAGGTTTTTTTTTGGAAGCTTAACATGGTAGATTTTGTTTTTGCGTTTGATGAGTGTTGAATCGATGTGATGACGAAAATAATAGCGTTCTTCTTGTTTGTACTCGTAATCATTGGTTGAAGGACGTCGAGGAAGGGAAAGTGAAATGATCAGAGTAAGGTTATTGCTTCTGGAGTTGTTCATATATCTGTTTCGATTGAATTGTGCAACTCAAGTAGCATTTTATTTTTATGGAGTCGACTCAATCGAGGACGGTGTCGCTAATTTTCAATACCGTGAGATTTATGGATCAAATTAACAAGAATGTGGAACAATCCATGATTTGAAAACGTTGTGATTAATGTTTAAGATGCTTTTTTTGGGGTATCGTTTTGAATTGTTATTTGCTCTGGCTCATTTTTCTTCTTTTTACGTTCTATACTGCCAGAAATATCATACGTAACATGAGTACTGTACAATCACCAAAGCATCCGAAGTTTATTTCCGAGGAAGGGGCTGGCGTTTACTCTAGAAGTAAACCTGATGGTATGTTTTCCCCCCTCGTTTTGATGGAAGGGAAATCTATGTTCGTGTTTTCTTGCTCTGGATTTGTCCATTTGGCTATATTAGACTTGTTCATTTTTATCACTCGACCAAACTTGAACAATTTGAAATGATTTTTAAAACAAATAAAGAACTTTCAGACGTTCTTATTACTGAAAATTGAGAAACAATATAGGTGTTTTATATGACTTCACTCATCATCTAAGCACGGCTTTCTATATTGCTACTGCAGGTATCAGATTTCGTTTTGTTTCTTACAATATTTTAGCCAGGTAGGCAACACATTTCCGATTCATTTCATTCTTCATTCTTCATTCTTAAGTTTAGTTTTATGCTTCTTTCCGTTCAATAATGTTGTTTGCTGCAAAACATCTTGTTCAGGTCAGGAATATATAAGCAAAAGTGGATTGCCGTAGCAAAAATGTAATAGAATATTAGCGTTAGGACATTTGTAAACACATTGAATATAATTCATCCTTATTGATGATTTGGGAATCTACTATTATAACTTGTTTGTATACTATTAAAATTATTGAATATAATTCATCCTTCTTGATGATTTTGGATTCTACATTTGATAAAAACTGTAAACCTTAGATAAGGTTGATAGCTGTTCCGTAAAATGTCAATGCAGTGAAATTGAATTCGGGTGTGGTTTAAGTTTTTCTGTTCAATAGGATCCAGATATCTGATTTAACACATCTATATATAATGGTAATGGCTATAAAATTAGCTATAAATTTAAACCAACAAGTCTTGNTTCATTCTTCATTCTTAAGTTTAGTTTTATGCTTCTTTCCGTTCAATAATGTTGTTTGCTGCAAAACATCTTGTTCAGGTCAGGAATATATAAGCAAAAGTGGATTGCCGTAGCAAAAATGTAATAGAATATTAGCGTTAGGACATTTGTAAACACATTGAATATAATTCATCCTTATTGATGATTTGGGAATCTACTATTATAACTTGTTTGTATACTATTAAAATTATTGAATATAATTCATCCTTCTTGATGATTTTGGATTCTACATTTGATAAAAACTGTAAACCTTAGATAAGGTTGATAGCTGTTCCGTAAGATGTCAATGCAGTGAAATTGGATTCAGGTGTGGTTTAAGTTTTTCTGTTCAATAGGATCCAGATATCTGATTTAACACATCTATATATGATGGTAATGGCTATAAAATTAGCTATAAATTTAAACCAATAAGTCTTGTGAAAATATTACCGGGTCAGTTATGTTGCACTACACAGGATATTATGTTGGAATTATGCCTGCTTTCAAACTCAAGAAGCCTTTTCATCATGTTGTAATTGTAGCAAACACCCATCTTTACTGGTAAAATTTTATTTTCTAGGTTTAAGGCTATACAGTCGCTTAAAGGGCCTGTTGTATTGAAGAACATCTTATCCCTCCAATTTGTAAAGAATTGATATTTATTACACGGATCCAGAATGGGCTGATGACAAGCTTGCCAAGGCCAAATAGCTTTTATCACGCCTAGCTCGATTCAAGACATCAGTGTCTGAAAGGTTTGAATGCACACCCTCAGTACCTTTGGCTGGTGACTTCAATTCAAACCCTGGGGACAAGGTTCGTCATCTATCTTGATTTATCATTTGCATAGATTTTTCTCGTCCTGAAAAATGGTCTCTGACTATTTAATTGTAATTAGATTTGAATGAGTTTTTTCTTGGTTAGTGACATTGATACAGTCTCATGAGCATAAGATAACAAGATGACATGAGAAATACTATTTTACATAATCTCATATGGCAGAAACATATGTAGAGAAATATTAGGTAGAGCTTGGCTAGATAATCTTGAACACCTTTACCTTATAGTTTTTTCCCGAAAACACGACCCTTTTTTTCTTGTTAGAATTATCTCTTATGTAGTTAACAACTTAACATGATATCGTACTTCAAATGATCTTCCTTACAAAAAATTAAACTACATAGTTTAAAAATGAAGAATAAAGGCAAACAGTTTGGTATGATTACTGTTGAAGGCAAATAGTTTGGAAGGATTAGCCGTAAATCAGTATCCAAGCTGAGAATAGGTAGAAGGATATTTGTGTAATTTCTTATGGAGTAGTTGACCTCTTTAGATTTAATTATCTAATGTCTAAGAATTATTATTTAGATTGACTGGTACCTAAGAGATTTATTTTAGGTTTAACATTAGGGTGTTTTAATTTAGATTTACTGTTATCCTCCCTAAAAATAAACAAGAAAGACAGCAAGTTACAACATGGTATCATAACATAGCTACCGTCAAAATCCTCCATCAACAAGACCCTCAGACTCAGCCACTCAAATCAACTGAA

mRNA sequence

CACCGCGCCATCGAATCGGTCGATTTTGCATTTACATATTTAAAGATTTTCCGCGGCTGAAAGCTATTATGGCTCGCAGTTGCAGCTTTCTTCTCTCTCCCGCTGTCTAAGCTGAAATATCATACGTAACATGAGTACTGTACAATCACCAAAGCATCCGAAGTTTATTTCCGAGGAAGGGGCTGGCGTTTACTCTAGAAGTAAACCTGATGGTTTAAGGCTATACAGTCGCTTAAAGGGCCTGTTATTTACTGTTATCCTCCCTAAAAATAAACAAGAAAGACAGCAAGTTACAACATGGTATCATAACATAGCTACCGTCAAAATCCTCCATCAACAAGACCCTCAGACTCAGCCACTCAAATCAACTGAA

Coding sequence (CDS)

ATGAGTACTGTACAATCACCAAAGCATCCGAAGTTTATTTCCGAGGAAGGGGCTGGCGTTTACTCTAGAAGTAAACCTGATGGTTTAAGGCTATACAGTCGCTTAAAGGGCCTGTTATTTACTGTTATCCTCCCTAAAAATAAACAAGAAAGACAGCAAGTTACAACATGGTATCATAACATAGCTACCGTCAAAATCCTCCATCAACAAGACCCTCAGACTCAGCCACTCAAATCAACTGAA

Protein sequence

MSTVQSPKHPKFISEEGAGVYSRSKPDGLRLYSRLKGLLFTVILPKNKQERQQVTTWYHNIATVKILHQQDPQTQPLKSTE
Homology
[Close]
BLAST of Cp4.1LG02g02960 vs. NCBI nr
Match: XP_022981749.1 (uncharacterized protein LOC111480806 isoform X2 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 5.41e-10
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MSTVQSPKHPKFISEEGA +YSRSKPDG+R
Sbjct: 1  MSTVQSPKHPKFISEEGADIYSRSKPDGIR 30

[Close]
BLAST of Cp4.1LG02g02960 vs. NCBI nr
Match: XP_022981748.1 (uncharacterized protein LOC111480806 isoform X1 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 6.81e-10
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MSTVQSPKHPKFISEEGA +YSRSKPDG+R
Sbjct: 11 MSTVQSPKHPKFISEEGADIYSRSKPDGIR 40

[Close]
BLAST of Cp4.1LG02g02960 vs. NCBI nr
Match: KAG7031637.1 (Carbon catabolite repressor protein 4-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 1.42e-08
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPD 27
          MSTVQSPKHPKFISEEGA +YSRSKPD
Sbjct: 1  MSTVQSPKHPKFISEEGADIYSRSKPD 27

[Close]
BLAST of Cp4.1LG02g02960 vs. NCBI nr
Match: XP_022140802.1 (carbon catabolite repressor protein 4 homolog 4 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 5.23e-07
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MSTVQSPK+PKFIS EGA +YSRSKPDG+R
Sbjct: 24 MSTVQSPKYPKFISVEGADIYSRSKPDGIR 53

[Close]
BLAST of Cp4.1LG02g02960 vs. NCBI nr
Match: TYK01841.1 (carbon catabolite repressor protein 4-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 4.65e-06
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MS VQSPKHPKFIS EGA +YSRSK DG+R
Sbjct: 1  MSAVQSPKHPKFISVEGADIYSRSKSDGIR 30

[Close]
BLAST of Cp4.1LG02g02960 vs. ExPASy TrEMBL
Match: A0A6J1J2Q6 (uncharacterized protein LOC111480806 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480806 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.62e-10
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MSTVQSPKHPKFISEEGA +YSRSKPDG+R
Sbjct: 1  MSTVQSPKHPKFISEEGADIYSRSKPDGIR 30

[Close]
BLAST of Cp4.1LG02g02960 vs. ExPASy TrEMBL
Match: A0A6J1J2Y5 (uncharacterized protein LOC111480806 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480806 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.30e-10
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MSTVQSPKHPKFISEEGA +YSRSKPDG+R
Sbjct: 11 MSTVQSPKHPKFISEEGADIYSRSKPDGIR 40

[Close]
BLAST of Cp4.1LG02g02960 vs. ExPASy TrEMBL
Match: A0A6J1CI40 (carbon catabolite repressor protein 4 homolog 4 OS=Momordica charantia OX=3673 GN=LOC111011381 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.53e-07
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MSTVQSPK+PKFIS EGA +YSRSKPDG+R
Sbjct: 24 MSTVQSPKYPKFISVEGADIYSRSKPDGIR 53

[Close]
BLAST of Cp4.1LG02g02960 vs. ExPASy TrEMBL
Match: A0A5D3BPZ3 (Carbon catabolite repressor protein 4-like protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00890 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.25e-06
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MS VQSPKHPKFIS EGA +YSRSK DG+R
Sbjct: 1  MSAVQSPKHPKFISVEGADIYSRSKSDGIR 30

[Close]
BLAST of Cp4.1LG02g02960 vs. ExPASy TrEMBL
Match: A0A5A7UEY1 (Carbon catabolite repressor protein 4-like protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001030 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.25e-06
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1  MSTVQSPKHPKFISEEGAGVYSRSKPDGLR 30
          MS VQSPKHPKFIS EGA +YSRSK DG+R
Sbjct: 1  MSAVQSPKHPKFISVEGADIYSRSKSDGIR 30

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g02960 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g02960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022981749.15.41e-1090.00uncharacterized protein LOC111480806 isoform X2 [Cucurbita maxima][more]
XP_022981748.16.81e-1090.00uncharacterized protein LOC111480806 isoform X1 [Cucurbita maxima][more]
KAG7031637.11.42e-0892.59Carbon catabolite repressor protein 4-like 4, partial [Cucurbita argyrosperma su... [more]
XP_022140802.15.23e-0783.33carbon catabolite repressor protein 4 homolog 4 [Momordica charantia][more]
TYK01841.14.65e-0680.00carbon catabolite repressor protein 4-like protein 4 [Cucumis melo var. makuwa][more]
BLAST of Cp4.1LG02g02960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J2Q62.62e-1090.00uncharacterized protein LOC111480806 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1J2Y53.30e-1090.00uncharacterized protein LOC111480806 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1CI402.53e-0783.33carbon catabolite repressor protein 4 homolog 4 OS=Momordica charantia OX=3673 G... [more]
A0A5D3BPZ32.25e-0680.00Carbon catabolite repressor protein 4-like protein 4 OS=Cucumis melo var. makuwa... [more]
A0A5A7UEY12.25e-0680.00Carbon catabolite repressor protein 4-like protein 4 OS=Cucumis melo var. makuwa... [more]
BLAST of Cp4.1LG02g02960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g02960.1Cp4.1LG02g02960.1mRNA