Cp4.1LG02g02900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g02900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NDR1/HIN1-like protein 12
Location	Cp4.1LG02: 3493247 .. 3493852 (+)
RNA-Seq Expression	Cp4.1LG02g02900
Synteny	Cp4.1LG02g02900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCAAATTTCTTATCCAGCCTAAAGCGGCATACTCATCCCCTGATTTGGATTGCCGGCATAATCTGTGCTGCCATAGCCCTAGCAGTGATAATCGCAGGCATCGTCATTTTCATCGGCTATGTAACGATCCGCCCTAGGGTGCCTACAATCAGCGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGCTTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAAAATCAAAATGCTAGAGCACACGCAAGCTTCTCACATACCGATTTCGTCCTTATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGACCGTTCAAAGTGAACAAAATGAGTTACCTGGATTTGCACTTCTTAGTGGAATCGTCGGCGATTCCGCTAAATCCAACGCAGATGCAGCATCTAGGCTGGTCGCTGAAGAGGAATCTGATGCAGTTCGATCTGAAAGGAAGCTCGAGAACTCGATGGAGAGTGGGAGTTCTTGGACCGCTGAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCCTGTTCTTCGAGGAATAAGTAA

mRNA sequence

ATGCCACCAAATTTCTTATCCAGCCTAAAGCGGCATACTCATCCCCTGATTTGGATTGCCGGCATAATCTGTGCTGCCATAGCCCTAGCAGTGATAATCGCAGGCATCGTCATTTTCATCGGCTATGTAACGATCCGCCCTAGGGTGCCTACAATCAGCGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGCTTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAAAATCAAAATGCTAGAGCACACGCAAGCTTCTCACATACCGATTTCGTCCTTATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGACCGTTCAAAGTGAACAAAATGAGTTACCTGGATTTGCACTTCTTAGTGGAATCGTCGGCGATTCCGCTAAATCCAACGCAGATGCAGCATCTAGGCTGGTCGCTGAAGAGGAATCTGATGCAGTTCGATCTGAAAGGAAGCTCGAGAACTCGATGGAGAGTGGGAGTTCTTGGACCGCTGAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCCTGTTCTTCGAGGAATAAGTAA

Coding sequence (CDS)

ATGCCACCAAATTTCTTATCCAGCCTAAAGCGGCATACTCATCCCCTGATTTGGATTGCCGGCATAATCTGTGCTGCCATAGCCCTAGCAGTGATAATCGCAGGCATCGTCATTTTCATCGGCTATGTAACGATCCGCCCTAGGGTGCCTACAATCAGCGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGCTTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAAAATCAAAATGCTAGAGCACACGCAAGCTTCTCACATACCGATTTCGTCCTTATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGACCGTTCAAAGTGAACAAAATGAGTTACCTGGATTTGCACTTCTTAGTGGAATCGTCGGCGATTCCGCTAAATCCAACGCAGATGCAGCATCTAGGCTGGTCGCTGAAGAGGAATCTGATGCAGTTCGATCTGAAAGGAAGCTCGAGAACTCGATGGAGAGTGGGAGTTCTTGGACCGCTGAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCCTGTTCTTCGAGGAATAAGTAA

Protein sequence

MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHLRFYPRNGSYIPAPCSSRNK

Homology

[Close]

BLAST of Cp4.1LG02g02900 vs. NCBI nr
Match: XP_022940744.1 (uncharacterized protein LOC111446247 [Cucurbita moschata] >KAG6608016.1 hypothetical protein SDJN03_01358, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031640.1 hypothetical protein SDJN02_05681, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 408 bits (1049), Expect = 8.76e-144
Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
           HLRFYPRNGSYIPAPCSSR+K
Sbjct: 181 HLRFYPRNGSYIPAPCSSRDK 201

[Close]

BLAST of Cp4.1LG02g02900 vs. NCBI nr
Match: XP_038896622.1 (uncharacterized protein LOC120084885 [Benincasa hispida])

HSP 1 Score: 395 bits (1016), Expect = 9.43e-139
Identity = 192/201 (95.52%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSS+KRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHLD
Sbjct: 1   MPPNFLSSIKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNARAHASFS TDFVL+FDGIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQMQHL WSLKR+LMQFDLKGSSRTRWRVG+LGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
           HLRFYPRNGSYIPAPCSSR K
Sbjct: 181 HLRFYPRNGSYIPAPCSSRQK 201

[Close]

BLAST of Cp4.1LG02g02900 vs. NCBI nr
Match: XP_022135525.1 (uncharacterized protein LOC111007456 [Momordica charantia])

HSP 1 Score: 384 bits (986), Expect = 3.54e-134
Identity = 187/201 (93.03%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPP FLSSLKRHTHPLIWIAGIICA IALAVII GIVIFIGYVTIRPRVP+ISVTDGHLD
Sbjct: 1   MPPKFLSSLKRHTHPLIWIAGIICATIALAVIIGGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHASFS TDFVLIFDGIEIASLVA RPFKV+KMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSQTDFVLIFDGIEIASLVARRPFKVSKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQM HL WSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMDHLSWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
           HLRF+PRNGSY+PAPCSS+ K
Sbjct: 181 HLRFHPRNGSYVPAPCSSKGK 201

[Close]

BLAST of Cp4.1LG02g02900 vs. NCBI nr
Match: KAA0052257.1 (NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa] >TYK01822.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 383 bits (983), Expect = 1.01e-133
Identity = 186/201 (92.54%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVI+AGIVIFIGYVTIRPRVP+ISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIVAGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHASFS TDFVL+FDGIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSKTDFVLLFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHL WSLKRNL+QFDLKGSSRTRWRVG+LGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRNLIQFDLKGSSRTRWRVGILGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
           HLRF PRNGSYIP PCSS  K
Sbjct: 181 HLRFLPRNGSYIPMPCSSNQK 201

[Close]

BLAST of Cp4.1LG02g02900 vs. NCBI nr
Match: KAG7024719.1 (hypothetical protein SDJN02_13537, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 383 bits (983), Expect = 1.56e-133
Identity = 187/201 (93.03%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IA+AVIIAGIVIFIGYVTIRP VP+ISVTDGHLD
Sbjct: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIR+SR GLLEVQMKIVVRAENQNARA ASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS
Sbjct: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNP QMQHL WSL RNLMQFDLKGSSRTRWRVGVLGPLKFWC+LNC
Sbjct: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNC 192

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
            LRFYPRNGSYIPAPCSS++K
Sbjct: 193 RLRFYPRNGSYIPAPCSSKDK 213

[Close]

BLAST of Cp4.1LG02g02900 vs. ExPASy TrEMBL
Match: A0A6J1FL61 (uncharacterized protein LOC111446247 OS=Cucurbita moschata OX=3662 GN=LOC111446247 PE=4 SV=1)

HSP 1 Score: 408 bits (1049), Expect = 4.24e-144
Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
           HLRFYPRNGSYIPAPCSSR+K
Sbjct: 181 HLRFYPRNGSYIPAPCSSRDK 201

[Close]

BLAST of Cp4.1LG02g02900 vs. ExPASy TrEMBL
Match: A0A6J1C199 (uncharacterized protein LOC111007456 OS=Momordica charantia OX=3673 GN=LOC111007456 PE=4 SV=1)

HSP 1 Score: 384 bits (986), Expect = 1.71e-134
Identity = 187/201 (93.03%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPP FLSSLKRHTHPLIWIAGIICA IALAVII GIVIFIGYVTIRPRVP+ISVTDGHLD
Sbjct: 1   MPPKFLSSLKRHTHPLIWIAGIICATIALAVIIGGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHASFS TDFVLIFDGIEIASLVA RPFKV+KMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSQTDFVLIFDGIEIASLVARRPFKVSKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQM HL WSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMDHLSWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
           HLRF+PRNGSY+PAPCSS+ K
Sbjct: 181 HLRFHPRNGSYVPAPCSSKGK 201

[Close]

BLAST of Cp4.1LG02g02900 vs. ExPASy TrEMBL
Match: A0A5D3BSN8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00630 PE=4 SV=1)

HSP 1 Score: 383 bits (983), Expect = 4.91e-134
Identity = 186/201 (92.54%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVI+AGIVIFIGYVTIRPRVP+ISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIVAGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHASFS TDFVL+FDGIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSKTDFVLLFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHL WSLKRNL+QFDLKGSSRTRWRVG+LGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRNLIQFDLKGSSRTRWRVGILGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
           HLRF PRNGSYIP PCSS  K
Sbjct: 181 HLRFLPRNGSYIPMPCSSNQK 201

[Close]

BLAST of Cp4.1LG02g02900 vs. ExPASy TrEMBL
Match: A0A6J1FEV3 (uncharacterized protein LOC111443437 OS=Cucurbita moschata OX=3662 GN=LOC111443437 PE=4 SV=1)

HSP 1 Score: 382 bits (982), Expect = 1.07e-133
Identity = 187/201 (93.03%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IA+AVIIAGIVIFIGYVTIRP VP+ISVTDGHLD
Sbjct: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIR+SR GLLEVQMKIVVRAENQNARA ASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS
Sbjct: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNP QMQHL WSL RNLMQFDLKGSSRTRWRVGVLGPLKFWC LNC
Sbjct: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCHLNC 192

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
            LRFYPRNGSYIPAPCSS++K
Sbjct: 193 RLRFYPRNGSYIPAPCSSKDK 213

[Close]

BLAST of Cp4.1LG02g02900 vs. ExPASy TrEMBL
Match: A0A6J1IKM1 (uncharacterized protein LOC111477102 OS=Cucurbita maxima OX=3661 GN=LOC111477102 PE=4 SV=1)

HSP 1 Score: 380 bits (977), Expect = 6.19e-133
Identity = 185/201 (92.04%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVT RP VP+ISVTDGHLD
Sbjct: 13  MPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTTRPTVPSISVTDGHLD 72

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIR+SR GLLEVQMK+VVRAENQNAR  A FSHTDFVLIFDGIEIASLVAHRPFKVNKMS
Sbjct: 73  RIRNSRIGLLEVQMKLVVRAENQNARTQARFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNP QMQHL WSL RNLMQFDLKGSSRTRWRVGVLGPLKFWC LNC
Sbjct: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCHLNC 192

Query: 181 HLRFYPRNGSYIPAPCSSRNK 201
           HLRFYPRNGSYIPAPCSS++K
Sbjct: 193 HLRFYPRNGSYIPAPCSSKDK 213

[Close]

BLAST of Cp4.1LG02g02900 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-51
Identity = 100/192 (52.08%), Postives = 136/192 (70.83%), Query Frame = 0


Query: 11  RH-THPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRSSRTGL 70
           RH T P IW A IICA I++ VI+ GI++F+GY+ I PRVP ISV D HLD ++    G+
Sbjct: 7   RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFLKYDIVGV 66

Query: 71  LEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDLHFLVE 130
           L+ Q+ IV+R EN NA+AHA F  T+F L ++G  IA L A   F+V K   + L +LV+
Sbjct: 67  LQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPE-FEVVKEKSMFLPYLVQ 126

Query: 131 SSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHLRFYPRNG 190
           S  IPLNPT MQ + +++K++++ F+LKG SRTRWRVG LG +KF C L+C LRF P + 
Sbjct: 127 SYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLRFRPSDH 186

Query: 191 SYIPAPCSSRNK 202
           SYIP+PC+S +K
Sbjct: 187 SYIPSPCTSAHK 197

[Close]

BLAST of Cp4.1LG02g02900 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-10
Identity = 44/173 (25.43%), Postives = 78/173 (45.09%), Query Frame = 0


Query: 11  RHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRSSRTGLL 70
           + T P+   A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L
Sbjct: 128 KRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVL 187

Query: 71  EVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAH-RPFKVNKMSYLDLHFLVE 130
              + +VV   N + ++   FS+  F L F    IA+   H  PF V K   +   F + 
Sbjct: 188 NGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIAT--EHIEPFIVPKGMSMFTSFHLV 247

Query: 131 SSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHL 183
           SS + +   Q Q L   L    +  +L+G+   R  +G L    +W    C +
Sbjct: 248 SSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSI 298

[Close]

BLAST of Cp4.1LG02g02900 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-09
Identity = 42/164 (25.61%), Postives = 74/164 (45.12%), Query Frame = 0


Query: 20  AGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRSSRTGLLEVQMKIVVR 79
           A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L   + +VV 
Sbjct: 5   ATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVLNGDLAVVVN 64

Query: 80  AENQNARAHASFSHTDFVLIFDGIEIASLVAH-RPFKVNKMSYLDLHFLVESSAIPLNPT 139
             N + ++   FS+  F L F    IA+   H  PF V K   +   F + SS + +   
Sbjct: 65  FTNPSKKSSVDFSYVMFELYFYNTLIAT--EHIEPFIVPKGMSMFTSFHLVSSQVQIQMI 124

Query: 140 QMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHL 183
           Q Q L   L    +  +L+G+   R  +G L    +W    C +
Sbjct: 125 QSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSI 166

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02900 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g02900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940744.1	8.76e-144	99.50	uncharacterized protein LOC111446247 [Cucurbita moschata] >KAG6608016.1 hypothet...	[more]
XP_038896622.1	9.43e-139	95.52	uncharacterized protein LOC120084885 [Benincasa hispida]	[more]
XP_022135525.1	3.54e-134	93.03	uncharacterized protein LOC111007456 [Momordica charantia]	[more]
KAA0052257.1	1.01e-133	92.54	NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa] >TYK01822.1 NDR1/HIN1-like ...	[more]
KAG7024719.1	1.56e-133	93.03	hypothetical protein SDJN02_13537, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG02g02900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FL61	4.24e-144	99.50	uncharacterized protein LOC111446247 OS=Cucurbita moschata OX=3662 GN=LOC1114462...	[more]
A0A6J1C199	1.71e-134	93.03	uncharacterized protein LOC111007456 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3BSN8	4.91e-134	92.54	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1FEV3	1.07e-133	93.03	uncharacterized protein LOC111443437 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]
A0A6J1IKM1	6.19e-133	92.04	uncharacterized protein LOC111477102 OS=Cucurbita maxima OX=3661 GN=LOC111477102...	[more]

BLAST of Cp4.1LG02g02900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45320.1	1.5e-51	52.08	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G13050.1	6.3e-10	25.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13050.2	7.0e-09	25.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 9..200
None	No IPR available	PANTHER	PTHR31852:SF9	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 9..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g02900.1	Cp4.1LG02g02900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006898	receptor-mediated endocytosis
cellular_component	GO:0030124	AP-4 adaptor complex
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140312	cargo adaptor activity