Cp4.1LG02g02860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g02860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Precursor of CEP12
Location	Cp4.1LG02: 3482359 .. 3482619 (-)
RNA-Seq Expression	Cp4.1LG02g02860
Synteny	Cp4.1LG02g02860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTAGAAGTTTTCACCTTCTTGCTCTCGTCGTTTTTCTCCTTTATTTCCTCTCGGTAACATCACGACCCCTACATGATATTTATTCACCAACAATTGTAGTTGGCTTTGGCAATCGCCATGCAATAACGCCTCCTGTTTCGATGTCGACATTCTCGATAAATCGGTATAAATATGTCGAGATGGACGCTTTTCGACCGACGTCGCCTGGGCATAGCCCTGGGGTAGGTCACAAGGATCCACCCGGTGCATCGTAG

mRNA sequence

ATGCCTCTTAGAAGTTTTCACCTTCTTGCTCTCGTCGTTTTTCTCCTTTATTTCCTCTCGGTAACATCACGACCCCTACATGATATTTATTCACCAACAATTGTAGTTGGCTTTGGCAATCGCCATGCAATAACGCCTCCTGTTTCGATGTCGACATTCTCGATAAATCGGTATAAATATGTCGAGATGGACGCTTTTCGACCGACGTCGCCTGGGCATAGCCCTGGGGTAGGTCACAAGGATCCACCCGGTGCATCGTAG

Coding sequence (CDS)

ATGCCTCTTAGAAGTTTTCACCTTCTTGCTCTCGTCGTTTTTCTCCTTTATTTCCTCTCGGTAACATCACGACCCCTACATGATATTTATTCACCAACAATTGTAGTTGGCTTTGGCAATCGCCATGCAATAACGCCTCCTGTTTCGATGTCGACATTCTCGATAAATCGGTATAAATATGTCGAGATGGACGCTTTTCGACCGACGTCGCCTGGGCATAGCCCTGGGGTAGGTCACAAGGATCCACCCGGTGCATCGTAG

Protein sequence

MPLRSFHLLALVVFLLYFLSVTSRPLHDIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPGAS

Homology

[Close]

BLAST of Cp4.1LG02g02860 vs. ExPASy Swiss-Prot
Match: P0DN99 (Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.7e-06
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTS--RPLHDIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVE 64
          SF +L L+V  L+F + T+  +P+  ++ P   + +       P      F IN YK +E
Sbjct: 12 SFFMLFLLVLHLHFETTTAARKPVR-VFGPPSSIEWS--PPSPPKDDFEWFEINIYKNIE 71

Query: 65 MDAFRPTSPGHSPGVGHKDPPGA 86
            AFRPT  G S G+GHKDPPGA
Sbjct: 72 QTAFRPTGQGPSQGIGHKDPPGA 91

[Close]

BLAST of Cp4.1LG02g02860 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-05
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 55 INRYKYVEMDAFRPTSPGHSPGVGHKDPPGA 86
          INR+K +E DAFRPT  G S G+GHK+PPGA
Sbjct: 55 INRFKNIEQDAFRPTHQGPSQGIGHKNPPGA 85

[Close]

BLAST of Cp4.1LG02g02860 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169 bits (428), Expect = 8.39e-53
Identity = 83/86 (96.51%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MPLRSFHLLALVVFLLYFLSVTSRPLHDIYSPTIVVGFGNRHAITPPVSMSTFSINRYKY 60
          MPLRSFHLLALVVFLLYFLSVTSRP HDIYSP IVVGFGNRHAITPP SMSTFSINRYKY
Sbjct: 1  MPLRSFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPASMSTFSINRYKY 60

Query: 61 VEMDAFRPTSPGHSPGVGHKDPPGAS 86
          VEMDAFRPTSPGHSPGVGHKDPPGAS
Sbjct: 61 VEMDAFRPTSPGHSPGVGHKDPPGAS 86

[Close]

BLAST of Cp4.1LG02g02860 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 2.99e-23
Identity = 55/90 (61.11%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 4  RSFH---LLALVVFLLYFLSVTSRPLHDI----YSPTIVVGFGNRHAITPPVSMST--FS 63
          RS H   LL L+  LL+ LSVTSRPLH I     +  + V   + HAI PP  +ST  FS
Sbjct: 5  RSLHFINLLPLITLLLHSLSVTSRPLHGIDPLPSAAAMAVVSAHCHAILPPAPVSTLAFS 64

Query: 64 INRYKYVEMDAFRPTSPGHSPGVGHKDPPG 84
          INRYKYVE DAFRPT+PGHSPGVGH DPPG
Sbjct: 65 INRYKYVETDAFRPTTPGHSPGVGHTDPPG 94

[Close]

BLAST of Cp4.1LG02g02860 vs. NCBI nr
Match: CAB4309383.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 72.4 bits (176), Expect = 2.48e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPLHDIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVEM- 64
          SF ++AL++   + L   SRPL   + P + +G  N+     P S+  F+INRYK  E  
Sbjct: 9  SFFMVALLLGQNFDLVAASRPLLHTHPPAVHIGSLNKPI---PPSIGRFTINRYKMTESS 68

Query: 65 ---DAFRPTSPGHSPGVGHKDPPGA 85
             DAFRPTSPGHSPGVGH+DPPGA
Sbjct: 69 SGADAFRPTSPGHSPGVGHQDPPGA 90

[Close]

BLAST of Cp4.1LG02g02860 vs. NCBI nr
Match: KAF9690363.1 (hypothetical protein SADUNF_Sadunf01G0188000 [Salix dunnii])

HSP 1 Score: 70.9 bits (172), Expect = 1.08e-13
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 4  RSFHLLALVVFLL-----YFLSVTSRPLHDIYSPTIVVGFGNRHAITPP---VSMSTFSI 63
          RSF L  L   LL     + L+  SRPL DI+SP I      R+   PP   V  S + I
Sbjct: 6  RSFTLAFLTAVLLLLHQHFDLTAASRPL-DIHSPRIPRSGSLRNPKPPPPADVHDSWYRI 65

Query: 64 NRYKYVEMDAFRPTSPGHSPGVGHKDPPGA 85
          NRYK +E DAFRPT+PGHSPGVGH++PP A
Sbjct: 66 NRYKNMESDAFRPTTPGHSPGVGHEEPPSA 94

[Close]

BLAST of Cp4.1LG02g02860 vs. NCBI nr
Match: ONI05583.1 (hypothetical protein PRUPE_5G014000 [Prunus persica])

HSP 1 Score: 70.5 bits (171), Expect = 1.46e-13
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPLH-DIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVEM 64
          SF ++AL++     L   SRPLH   + P I +G  N+     P S+  F+INRYK  E 
Sbjct: 9  SFFMVALLLGQNSDLVAASRPLHLHTHPPAIHIGSLNKPI---PPSIGRFTINRYKMTES 68

Query: 65 ----DAFRPTSPGHSPGVGHKDPPGA 85
              DAFRPTSPGHSPGVGH+DPPGA
Sbjct: 69 SSGADAFRPTSPGHSPGVGHQDPPGA 91

[Close]

BLAST of Cp4.1LG02g02860 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.78e-21
Identity = 54/93 (58.06%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 4  RSFHL--------LALVVFLLYFLSVTS-RPLHDIYSPTIVVGFGNRHAITPPVSMS--- 63
          RS HL        L L++ LL+ L VTS RPLH I+         N HAITPP  +S   
Sbjct: 4  RSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHPH-------NPHAITPPAPVSLET 63

Query: 64 TFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPG 84
          +FSINRYKYVE DAFRPTSPGHSPGVGH +PPG
Sbjct: 64 SFSINRYKYVETDAFRPTSPGHSPGVGHNEPPG 89

[Close]

BLAST of Cp4.1LG02g02860 vs. ExPASy TrEMBL
Match: A0A6J5XA40 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30481 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.20e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPLHDIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVEM- 64
          SF ++AL++   + L   SRPL   + P + +G  N+     P S+  F+INRYK  E  
Sbjct: 9  SFFMVALLLGQNFDLVAASRPLLHTHPPAVHIGSLNKPI---PPSIGRFTINRYKMTESS 68

Query: 65 ---DAFRPTSPGHSPGVGHKDPPGA 85
             DAFRPTSPGHSPGVGH+DPPGA
Sbjct: 69 SGADAFRPTSPGHSPGVGHQDPPGA 90

[Close]

BLAST of Cp4.1LG02g02860 vs. ExPASy TrEMBL
Match: M5WX34 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014000 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.06e-14
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPLH-DIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVEM 64
          SF ++AL++     L   SRPLH   + P I +G  N+     P S+  F+INRYK  E 
Sbjct: 9  SFFMVALLLGQNSDLVAASRPLHLHTHPPAIHIGSLNKPI---PPSIGRFTINRYKMTES 68

Query: 65 ----DAFRPTSPGHSPGVGHKDPPGA 85
              DAFRPTSPGHSPGVGH+DPPGA
Sbjct: 69 SSGADAFRPTSPGHSPGVGHQDPPGA 91

[Close]

BLAST of Cp4.1LG02g02860 vs. ExPASy TrEMBL
Match: A0A314YRH1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23546 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.06e-14
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPLH-DIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVEM 64
          SF ++AL++   + L   SRPLH   + P I +G  N+     P S+  F+INRYK  E 
Sbjct: 9  SFFMVALLLGQNFDLVAASRPLHLHTHPPAIHIGSLNKPI---PPSIGRFTINRYKMTES 68

Query: 65 ----DAFRPTSPGHSPGVGHKDPPGA 85
              DAFRPTSPGHSPGVGH++PPGA
Sbjct: 69 SSGADAFRPTSPGHSPGVGHQNPPGA 91

[Close]

BLAST of Cp4.1LG02g02860 vs. ExPASy TrEMBL
Match: F6HJ28 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00620 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.80e-14
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 19 LSVTSRPLHDIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVEMDAFRPTSPGHSPGVG 78
          L   SRPL ++YSP I    G+      P+S+  F INR+K VE DA+RPTSPGHSPGVG
Sbjct: 25 LITASRPL-EVYSPAIP---GDASRKLEPLSIHEFVINRFKMVETDAYRPTSPGHSPGVG 84

Query: 79 HKDPPGA 85
          H  PPGA
Sbjct: 85 HLAPPGA 87

[Close]

BLAST of Cp4.1LG02g02860 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 55 INRYKYVEMDAFRPTSPGHSPGVGHKDPPGA 86
          INR+K +E DAFRPT  G S G+GHK+PPGA
Sbjct: 55 INRFKNIEQDAFRPTHQGPSQGIGHKNPPGA 85

[Close]

BLAST of Cp4.1LG02g02860 vs. TAIR 10
Match: AT1G31670.1 (Copper amine oxidase family protein )

HSP 1 Score: 47.4 bits (111), Expect = 6.9e-06
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTS--RPLHDIYSPTIVVGFGNRHAITPPVSMSTFSINRYKYVE 64
          SF +L L+V  L+F + T+  +P+  ++ P   + +       P      F IN YK +E
Sbjct: 12 SFFMLFLLVLHLHFETTTAARKPVR-VFGPPSSIEWS--PPSPPKDDFEWFEINIYKNIE 71

Query: 65 MDAFRPTSPGHSPGVGHKDPP 84
            AFRPT  G S G+GHKDPP
Sbjct: 72 QTAFRPTGQGPSQGIGHKDPP 89

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN99	8.7e-06	39.76	Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1	[more]
Q3EBM6	1.9e-05	67.74	Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1	[more]

BLAST of Cp4.1LG02g02860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608019.1	8.39e-53	96.51	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6591857.1	2.99e-23	61.11	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
CAB4309383.1	2.48e-14	49.41	unnamed protein product [Prunus armeniaca]	[more]
KAF9690363.1	1.08e-13	51.11	hypothetical protein SADUNF_Sadunf01G0188000 [Salix dunnii]	[more]
ONI05583.1	1.46e-13	51.16	hypothetical protein PRUPE_5G014000 [Prunus persica]	[more]

BLAST of Cp4.1LG02g02860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0	9.78e-21	58.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1	[more]
A0A6J5XA40	1.20e-14	49.41	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30481 PE=...	[more]
M5WX34	7.06e-14	51.16	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014000 PE=3 SV=1	[more]
A0A314YRH1	7.06e-14	50.00	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_235...	[more]
F6HJ28	8.80e-14	56.72	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00620 PE=3 SV=...	[more]

BLAST of Cp4.1LG02g02860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35612.1	1.4e-06	67.74	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G31670.1	6.9e-06	38.27	Copper amine oxidase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..86
None	No IPR available	PANTHER	PTHR33348:SF20	PRECURSOR OF CEP4	coord: 5..85
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 5..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g02860.1	Cp4.1LG02g02860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
biological_process	GO:0007165	signal transduction
biological_process	GO:0048364	root development
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005179	hormone activity