Cp4.1LG02g02510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g02510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Obg-like ATPase 1
Location	Cp4.1LG02: 3820553 .. 3823640 (-)
RNA-Seq Expression	Cp4.1LG02g02510
Synteny	Cp4.1LG02g02510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACGGTGGTTGGCCGTCGTTTCTCTTCTACATCCAAGATCAGTACGAGCCTCAGAGCCGGCATCGTTGGCCTCATCAATGTTGGAAAATCAACGCTCTTCATTGCCGTCGTAAACTAATATCGGTTGCTCTCTCTCTTTATTTCATACTAAATTTACTGTAATTTGGATTTCGAGCTATGGAACTGATGGTTACTTTCCGAAAACTCCGTAGTTACTGAAGAATTCGTTGTTGAATTGTCGTTATAGCTAGTGGATTGTGGAATTGTGCACCAGGATTTGTGAACTATTGGATTATAATGTAGGTAGTTAATAAACGCTACGGATTCACAGCTCTCTTCGGATTTTTCATGGTCTGATTATCGTATTTTTCATGGTCTGATTATCGTATTTTTCATGTTAGGTTTTCTACATATCTTGCATCTTAAGGCTACGCCTCGAGATTTTGACACGATAGCTCCACATATTCACTCCGAGCGATGAATGTGTTTCAATAATTTGTTTAAACTGAATTTTCCCGATCAGCATCGCTTTTAGTAATTTTGATGCAAGCTACATCATAGTATATTTAATATGATGATAATCATGCTGTTTCTGGCTAACAATGCAGTGTCATGTGTCCGATTGTGAAAGCTCACTTAACTTCTAACTTCTTTCCACAGATTTAATTTTGTGAATTGGACGGCTTCCTCTTTTAGTTCATACTTCCACTTGGAAAGCTACATCAATTTCATATGACGCGTATTGTCTATGATGGAAACCTTTGCAGGTCGAAAATGGCAAGGCTCAAGCAGCTAAATTTCCTTTCTGTACAATAGAGCCCAACGTAGGAGTATTTGCAGTTCCAGATCCTCGTCTGCATCAATTTTCTGATCTCAGCAAGTCTATACGAGCTGTCCCAGCATCCATAGAGTTTGTAGATACTGCTGGGTTAATGAATGGTGCCAGTCAAGGAGAAGTATGGTTCATTGACACCTCTGTTGAGGATTGCTAGGAGTGAGTCCCACCATGGCTAATTTAGGGAATGATCATGGGTTTATAGGTAAAGGAATACAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCGTACCATTGTGGAGAGTCGTGATTCCTAACACACCTCAGCGTTCTTTGACTAAGATTCCAAATGATTTTTTAATAAAGATGAAATTCATCGTACAGAAATGACAAGAAAACAAACACAATTTTCAAAAACAAAAAATTAAAAATTAAATGGTTATCAAACGATGGAAATACACATTTTGAAAATTCATTTGTATGTATGTTTTCGTTGATGTTATTTATAGAATTCTGTAATAGACTTCCCCTTTATTTTGACCACTGCAGGGACTGGGAAATAACTTTTTATCCCATGTTCGTGAGGTGGAGGTCCAAACTTCAGGTGATTTTCTATTTTATCATATTTCTTTCGTCATAATACTTAGAAACCTACTTACATAATTGTATTTCTAAAGAGTAATACCGGTTTAACAGATGAATTGGCTAGTATATTTCTCTGCAATATCAACTGCCCAGTGATTCTGATACAAGAGAAAGAACGGACTTTAATTTGCTGAATTCTTTGTTTTTTTGTCTTACAGAATTGTATAAGTTTTTGTTCCTATTTATCTACCTAACTTTTCTGTTATATATTTTTGTCCTATAATACGCATGCATGCCAAATAGCCAAAACAATGCCCTGGAAGCTCTAAGAATAACGTGGGCACTTCTTGCTTTTTTCATTACTTAATTTTGTGCTGTTAAATATTTTAATATTATTGTTCCAGGCTGTGCGCTGTTTTGAGGATAACGACATTGTTCACGTGAATGGGAAAATTGATCCAAAAACTGGTATTGATTTGATTAACCTAGAGCTTTATTTTTCAGATCTGGACCAGGTAACATCATTGAAACCTTTTCTATATTCATACGCATGTTTTGCACCTTTTGGAATGCAGGGTTACAATCCTTTGTTATTATCTTGCTACTTTTTATTTAATTGGACATTTTCCTTCTATACTATGTTAACTCAATCCCTAGATATCAGAAATATTAGGTAACAATAAATCTAAATAAATCCCTTAATAATAAGTAACGATAAATCTAAATAAATTCTTATCTAAAGCGAGTACGGGCTTTGCTTGCCTCTCTCGTGTTCACCCTCTTGGAGTACTTCCATGAACGTTACTGGCCTCTCTCATACTCACTTCACTTGGAGCACTTCGATTGGGGTTGTTTGCCTCTCTAGTGCTCACTTCTTAAGGAAAATTGATTAATGTTTAGGAAGAACTCCATCGCTTGCAATGGTGACTTCTTGAAGCAATTTTTCAAACTTCTAATTGTTCCTCACATCTAGAAGAACATGCCTAGGGTTTATCCTATTTTTCCAGCCAATTCCAAAATCTTGGTGCCAAGGTATTTGAGGATGACGGCTAGGTAGATCGAAGCATATATCGTAGTGACCTTTCTTAAGGTACTGTATGATTCTTCCATCCGGGCATTAGAGTCTAGCCTTACAAATTTGGAGATTTTAGTTTAGTCGCCTCCTTTATTGAATACTTCAAATATGAATCTCAAAATTTGATGTTTTGTGATAATGATGGGAAGAATGACTTGAGATTTTTTTTGACATGACGATGGAAGAGGATAGGTATCTTGGTCATGATCGGTTGCTAGGAAGGCTCCAGATAAATTTAGTCAAAGTAGGAAGGCTATGCTAATTAATTACACCTCTGAAAATAGATTAATTAAGGAAATGAATCCTATTTCCTAGTTGAAGTATGGTATGTTAGATTCTGGGCCTTTCTTGCTTGTTTGGTCTTTCTTAAAAATTTTGGATTCTCAAGAATTGATGGAGCAAGTGAGGCTACAATAATGATTCTTAAAGAAGAGAAGATGTCAATGGTTTCAAACCCACTGGGCTCTTGCTTCTATTACGCAATGGGCCAAATTATTGCTGTTGTTGAATGTGTTTTATCTGATGTTGCAAATGTTATGACGTTGCAATGGAAGTCGCAAGTGGGCTTGGCGCAAGAGTCCACCCAATGGACTTTTGATGCTGCAGAGGAACTTATACTCTGA

mRNA sequence

ATGTTACGGTGGTTGGCCGTCGTTTCTCTTCTACATCCAAGATCAGTCGAAAATGGCAAGGCTCAAGCAGCTAAATTTCCTTTCTGTACAATAGAGCCCAACGTAGGAGTATTTGCAGTTCCAGATCCTCGTCTGCATCAATTTTCTGATCTCAGCAAGTCTATACGAGCTGTCCCAGCATCCATAGAGGACTGGGAAATAACTTTTTATCCCATGTTCGTGAGGTGGAGGTCCAAACTTCAGGCTGTGCGCTGTTTTGAGGATAACGACATTGTTCACGTGAATGGGAAAATTGATCCAAAAACTGGTATTGATTTGATTAACCTAGAGCTTTATTTTTCAGATCTGGACCAGAAGAACATGCCTAGGGTTTATCCTATTTTTCCAGCCAATTCCAAAATCTTGGTGCCAAGGTATTTGAGGATGACGGCTAGAATTGATGGAGCAAGTGAGGCTACAATAATGATTCTTAAAGAAGAGAAGATGTCAATGGTTTCAAACCCACTGGGCTCTTGCTTCTATTACGCAATGGGCCAAATTATTGCTGTTGTTGAATGTGTTTTATCTGATGTTGCAAATGTTATGACGTTGCAATGGAAGTCGCAAGTGGGCTTGGCGCAAGAGTCCACCCAATGGACTTTTGATGCTGCAGAGGAACTTATACTCTGA

Coding sequence (CDS)

ATGTTACGGTGGTTGGCCGTCGTTTCTCTTCTACATCCAAGATCAGTCGAAAATGGCAAGGCTCAAGCAGCTAAATTTCCTTTCTGTACAATAGAGCCCAACGTAGGAGTATTTGCAGTTCCAGATCCTCGTCTGCATCAATTTTCTGATCTCAGCAAGTCTATACGAGCTGTCCCAGCATCCATAGAGGACTGGGAAATAACTTTTTATCCCATGTTCGTGAGGTGGAGGTCCAAACTTCAGGCTGTGCGCTGTTTTGAGGATAACGACATTGTTCACGTGAATGGGAAAATTGATCCAAAAACTGGTATTGATTTGATTAACCTAGAGCTTTATTTTTCAGATCTGGACCAGAAGAACATGCCTAGGGTTTATCCTATTTTTCCAGCCAATTCCAAAATCTTGGTGCCAAGGTATTTGAGGATGACGGCTAGAATTGATGGAGCAAGTGAGGCTACAATAATGATTCTTAAAGAAGAGAAGATGTCAATGGTTTCAAACCCACTGGGCTCTTGCTTCTATTACGCAATGGGCCAAATTATTGCTGTTGTTGAATGTGTTTTATCTGATGTTGCAAATGTTATGACGTTGCAATGGAAGTCGCAAGTGGGCTTGGCGCAAGAGTCCACCCAATGGACTTTTGATGCTGCAGAGGAACTTATACTCTGA

Protein sequence

MLRWLAVVSLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEITFYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLDQKNMPRVYPIFPANSKILVPRYLRMTARIDGASEATIMILKEEKMSMVSNPLGSCFYYAMGQIIAVVECVLSDVANVMTLQWKSQVGLAQESTQWTFDAAEELIL

Homology

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy Swiss-Prot
Match: P0ABU3 (Ribosome-binding ATPase YchF OS=Escherichia coli O157:H7 OX=83334 GN=ychF PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 7.5e-17
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 22  QAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT------------- 81
           +AA FPFCTIEPN GV  +PDPRL Q +++ K  R +P ++E  +I              
Sbjct: 28  EAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLG 87

Query: 82  --FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLD 118
             F        +    VRCFE+++I+HV+GK++P   I++IN EL  +DLD
Sbjct: 88  NQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLD 138

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy Swiss-Prot
Match: P0ABU2 (Ribosome-binding ATPase YchF OS=Escherichia coli (strain K12) OX=83333 GN=ychF PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 7.5e-17
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 22  QAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT------------- 81
           +AA FPFCTIEPN GV  +PDPRL Q +++ K  R +P ++E  +I              
Sbjct: 28  EAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLG 87

Query: 82  --FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLD 118
             F        +    VRCFE+++I+HV+GK++P   I++IN EL  +DLD
Sbjct: 88  NQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLD 138

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy Swiss-Prot
Match: P0ABU4 (Ribosome-binding ATPase YchF OS=Shigella flexneri OX=623 GN=ychF PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 7.5e-17
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 22  QAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT------------- 81
           +AA FPFCTIEPN GV  +PDPRL Q +++ K  R +P ++E  +I              
Sbjct: 28  EAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLG 87

Query: 82  --FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLD 118
             F        +    VRCFE+++I+HV+GK++P   I++IN EL  +DLD
Sbjct: 88  NQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLD 138

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy Swiss-Prot
Match: P44681 (Ribosome-binding ATPase YchF OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=ychF PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-16
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 22  QAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT------------- 81
           +AA +PFCTIEPN GV  +PDPRL   +++ K  R +P ++E  +I              
Sbjct: 28  EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLG 87

Query: 82  --FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLD 118
             F        +    VRCFE++DIVHV GKIDP   ID IN EL  +DLD
Sbjct: 88  NKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLD 138

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy Swiss-Prot
Match: Q7VMI2 (Ribosome-binding ATPase YchF OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=ychF PE=3 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 8.3e-16
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 22  QAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT------------- 81
           +AA +PFCTIEPN GV  +PDPRL   +++    R +P ++E  +I              
Sbjct: 28  EAANYPFCTIEPNTGVVPMPDPRLDALAEIVNPERVLPTTMEFVDIAGLVAGASKGEGLG 87

Query: 82  --FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLD 118
             F        +    VRCFE++DIVHV GKIDP   I+ IN EL  +DLD
Sbjct: 88  NKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPADDIETINTELALADLD 138

[Close]

BLAST of Cp4.1LG02g02510 vs. NCBI nr
Match: KAG7037484.1 (Ribosome-binding ATPase YchF, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196 bits (499), Expect = 2.59e-59
Identity = 103/133 (77.44%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 16  VENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEITFYP---- 75
           VENGKAQAAKFPFCTIEPNVGV AVPDPRLHQ SDLSKSIRAVPASIEDWE  F      
Sbjct: 100 VENGKAQAAKFPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEDWEYNFLSHVRE 159

Query: 76  MFVRWRSKLQ----------AVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLDQKNM 134
           + V    +L           AVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLDQKNM
Sbjct: 160 VEVHTSDELASIFLCNINCPAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLDQKNM 219

[Close]

BLAST of Cp4.1LG02g02510 vs. NCBI nr
Match: XP_028752406.1 (uncharacterized protein LOC114712104 isoform X2 [Prosopis alba])

HSP 1 Score: 152 bits (384), Expect = 7.30e-40
Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVG+ AVPDPRLH  SDLSKS RAVPASIE  +I 
Sbjct: 66  STLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDLSKSQRAVPASIEFVDIA 125

Query: 69  FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLDQ 118
                V+  S+ + VRCFEDNDIVHVNGK+DPKT ID+INLEL FSDLDQ
Sbjct: 126 G---LVKGASQGEVVRCFEDNDIVHVNGKVDPKTDIDVINLELVFSDLDQ 172

[Close]

BLAST of Cp4.1LG02g02510 vs. NCBI nr
Match: MBA0809245.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 145 bits (365), Expect = 1.28e-39
Identity = 79/125 (63.20%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVG+ AVPDPRLH  S+LSKS RAVPASIE  +I 
Sbjct: 62  STLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSELSKSQRAVPASIEFVDIA 121

Query: 69  ---------------FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYF 118
                          F        S LQ VRCFEDNDIVHVNGK+DPK+ ID+INLEL F
Sbjct: 122 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVF 181

[Close]

BLAST of Cp4.1LG02g02510 vs. NCBI nr
Match: KAG4204549.1 (hypothetical protein ERO13_A04G050966v2 [Gossypium hirsutum])

HSP 1 Score: 145 bits (365), Expect = 1.53e-39
Identity = 79/125 (63.20%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVG+ AVPDPRLH  S+LSKS RAVPASIE  +I 
Sbjct: 62  STLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSELSKSQRAVPASIEFVDIA 121

Query: 69  ---------------FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYF 118
                          F        S LQ VRCFEDNDIVHVNGK+DPK+ ID+INLEL F
Sbjct: 122 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVF 181

[Close]

BLAST of Cp4.1LG02g02510 vs. NCBI nr
Match: XP_038898081.1 (ribosome-binding ATPase YchF isoform X4 [Benincasa hispida])

HSP 1 Score: 150 bits (378), Expect = 2.48e-39
Identity = 82/125 (65.60%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVGV AVPDPRLH+ SDLSKS RAVPASIE  +I 
Sbjct: 67  STLFNAVVENGKAQAANFPFCTIEPNVGVVAVPDPRLHKLSDLSKSQRAVPASIEFVDIA 126

Query: 69  ---------------FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYF 118
                          F        S LQ VRCFEDNDI+HVNGKIDPKT ID+INLEL F
Sbjct: 127 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVNGKIDPKTDIDMINLELVF 186

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy TrEMBL
Match: A0A7J9HK09 (OBG-type G domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_024915 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 6.21e-40
Identity = 79/125 (63.20%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVG+ AVPDPRLH  S+LSKS RAVPASIE  +I 
Sbjct: 62  STLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSELSKSQRAVPASIEFVDIA 121

Query: 69  ---------------FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYF 118
                          F        S LQ VRCFEDNDIVHVNGK+DPK+ ID+INLEL F
Sbjct: 122 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVF 181

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy TrEMBL
Match: A0A6J1FB19 (Obg-like ATPase 1 OS=Cucurbita moschata OX=3662 GN=LOC111443686 PE=3 SV=1)

HSP 1 Score: 150 bits (378), Expect = 1.79e-39
Identity = 83/125 (66.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVGV AVPDPRLH+ SDLSKS RAVPASIE  +I 
Sbjct: 67  STLFNAVVENGKAQAANFPFCTIEPNVGVVAVPDPRLHKLSDLSKSQRAVPASIEFVDIA 126

Query: 69  ---------------FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYF 118
                          F        S LQ VRCFEDNDIVHVNGKIDPKT ID+INLEL F
Sbjct: 127 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKIDPKTDIDVINLELVF 186

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy TrEMBL
Match: A0A5A7UAY0 (Ribosome-binding ATPase YchF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001780 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.80e-39
Identity = 81/125 (64.80%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVGV AVPDPRLH+ SDLSKS RAV ASIE  +I 
Sbjct: 67  STLFNAVVENGKAQAANFPFCTIEPNVGVVAVPDPRLHKLSDLSKSQRAVAASIEFVDIA 126

Query: 69  ---------------FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYF 118
                          F        S LQ VRCFEDNDIVHVNGKIDPKT ID+INLEL  
Sbjct: 127 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKIDPKTDIDVINLELVL 186

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy TrEMBL
Match: A0A061F8X9 (Obg-like ATPase 1 OS=Theobroma cacao OX=3641 GN=TCM_032434 PE=3 SV=1)

HSP 1 Score: 149 bits (376), Expect = 2.36e-39
Identity = 77/110 (70.00%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVG+ AVPDPRLH  S+LSKS RAVPASIE  +I 
Sbjct: 64  STLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSELSKSQRAVPASIEFVDIA 123

Query: 69  FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLDQ 118
                V+  S+ + VRCFEDNDIVHVNGK+DPK+ ID+INLEL FSDLDQ
Sbjct: 124 G---LVKGASQGEVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQ 170

[Close]

BLAST of Cp4.1LG02g02510 vs. ExPASy TrEMBL
Match: A0A5J5A212 (OBG-type G domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_009884 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 5.40e-39
Identity = 80/125 (64.00%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVG+ AVPDPRLH  SDLSKS RAVPASIE  +I 
Sbjct: 103 STLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDLSKSQRAVPASIEFVDIA 162

Query: 69  ---------------FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYF 118
                          F        S LQ VRCFEDNDIVHVNGK+DPK+ ID+INLEL F
Sbjct: 163 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVF 222

[Close]

BLAST of Cp4.1LG02g02510 vs. TAIR 10
Match: AT1G56050.1 (GTP-binding protein-related )

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-31
Identity = 72/125 (57.60%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 9   SLLHPRSVENGKAQAAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT 68
           S L    VENGKAQAA FPFCTIEPNVG+ AVPD RL   S LS S + VPASIE  +I 
Sbjct: 67  STLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSKLSGSQKTVPASIEFVDIA 126

Query: 69  ---------------FYPMFVRWRSKLQAVRCFEDNDIVHVNGKIDPKTGIDLINLELYF 119
                          F        S LQ VRCFEDNDI+HVNGK+DPK+ ID+INLEL F
Sbjct: 127 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVNGKVDPKSDIDVINLELIF 186

[Close]

BLAST of Cp4.1LG02g02510 vs. TAIR 10
Match: AT1G30580.1 (GTP binding )

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-08
Identity = 35/110 (31.82%), Postives = 50/110 (45.45%), Query Frame = 0


Query: 23  AAKFPFCTIEPNVGVFAVPDPRLHQFSDLSKSIRAVPASIEDWEIT--------FYPMFV 82
           A  FPFCTIEPN     +PD R        K    +PA +E  +I            +  
Sbjct: 51  AENFPFCTIEPNEARVNIPDERFDWLCQTYKPKSEIPAFLEIHDIAGLVRGAHEGQGLGN 110

Query: 83  RWRSKLQAV-------RCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLD 118
            + S ++AV       R FED DI+HV+  +DP   ++ I  EL   D++
Sbjct: 111 NFLSHIRAVDGIFHVLRAFEDADIIHVDDIVDPVRDLETITEELRLKDIE 160

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0ABU3	7.5e-17	39.64	Ribosome-binding ATPase YchF OS=Escherichia coli O157:H7 OX=83334 GN=ychF PE=3 S...	[more]
P0ABU2	7.5e-17	39.64	Ribosome-binding ATPase YchF OS=Escherichia coli (strain K12) OX=83333 GN=ychF P...	[more]
P0ABU4	7.5e-17	39.64	Ribosome-binding ATPase YchF OS=Shigella flexneri OX=623 GN=ychF PE=3 SV=2	[more]
P44681	1.3e-16	42.34	Ribosome-binding ATPase YchF OS=Haemophilus influenzae (strain ATCC 51907 / DSM ...	[more]
Q7VMI2	8.3e-16	40.54	Ribosome-binding ATPase YchF OS=Haemophilus ducreyi (strain 35000HP / ATCC 70072...	[more]

BLAST of Cp4.1LG02g02510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037484.1	2.59e-59	77.44	Ribosome-binding ATPase YchF, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_028752406.1	7.30e-40	71.82	uncharacterized protein LOC114712104 isoform X2 [Prosopis alba]	[more]
MBA0809245.1	1.28e-39	63.20	hypothetical protein [Gossypium harknessii]	[more]
KAG4204549.1	1.53e-39	63.20	hypothetical protein ERO13_A04G050966v2 [Gossypium hirsutum]	[more]
XP_038898081.1	2.48e-39	65.60	ribosome-binding ATPase YchF isoform X4 [Benincasa hispida]	[more]

BLAST of Cp4.1LG02g02510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9HK09	6.21e-40	63.20	OBG-type G domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_0...	[more]
A0A6J1FB19	1.79e-39	66.40	Obg-like ATPase 1 OS=Cucurbita moschata OX=3662 GN=LOC111443686 PE=3 SV=1	[more]
A0A5A7UAY0	1.80e-39	64.80	Ribosome-binding ATPase YchF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A061F8X9	2.36e-39	70.00	Obg-like ATPase 1 OS=Theobroma cacao OX=3641 GN=TCM_032434 PE=3 SV=1	[more]
A0A5J5A212	5.40e-39	64.00	OBG-type G domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_009884...	[more]

BLAST of Cp4.1LG02g02510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56050.1	2.5e-31	57.60	GTP-binding protein-related	[more]
AT1G30580.1	2.9e-08	31.82	GTP binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..70 e-value: 1.5E-5 score: 26.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 20..120
IPR023192	TGS-like domain superfamily	GENE3D	1.10.150.300		coord: 89..122 e-value: 5.0E-5 score: 25.7
None	No IPR available	PANTHER	PTHR23305:SF18	OBG-LIKE ATPASE 1	coord: 9..118
None	No IPR available	PANTHER	PTHR23305	OBG GTPASE FAMILY	coord: 9..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g02510.1	Cp4.1LG02g02510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0035639	purine ribonucleoside triphosphate binding
molecular_function	GO:0032555	purine ribonucleotide binding
molecular_function	GO:0043021	ribonucleoprotein complex binding