Cp4.1LG02g02450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g02450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine/arginine-rich splicing factor SR45
Location	Cp4.1LG02: 3796385 .. 3802356 (-)
RNA-Seq Expression	Cp4.1LG02g02450
Synteny	Cp4.1LG02g02450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCTCTCTCATGTTTTCGTCATTTACGTGTCGACCATTTTTTGTGTTGCTTCTCCTTTCACTATCTCTAATCTCGAACGATACCAGACGGGTTTAAGCTAGGGTTCCGATTCTTGCAGCTCTTGCTGGCCATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCTCCGTCGAGATCGGGATCCTCTTCACGTTCCCGCTCATACTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCACGCTCCAGGTCACGGTCTGTATCTGTGTCCCATTCCAGGTCCATTTCCTCGTCGTCGTCTCCCTCCCGCAGTGCTAGTTCTCGGAGCCGAAGTCCCCCTCCTCAGAGAAAGAGGTTCGTCTTTCTTTCGCTTGAACTTGCATTTTTCATTTTTGGCTCCTGCATTTGGTGCTTATTGTTTGTTAGTGTGAGAGCAAGTATCAGAATTAGGAATTTTATGATTCGAAAAATCATTAGCATCATGCGTCGAAATCACATTTTCATTTTTTTTTTTTCCAGTTCTACTGAAACAGCTCGGAGGACTCGCGCTTCACCTCCACCAGCTAAACGAAGTTCTCCACCACCCAGGCAATAACATCTCCATCTACAGTCAAATCCAACTTCATTATTTGTTAATGGCATGCATTTTCCGATAAGTCGATCATTTTTGCTTTGGCGCGGTTTTTGATGCGCCGGCCTTTTGGTACAGAAATAAATCTTAGGAAATACAATGCTGTAATTATTTGAATTCAGTACTTCTTTAGCAATTATTTGAATTCAGCACTTCTTTAGCAATTATTTGAATTCAGCACTTCTTCAGAACTGTTGTGTAGCTATTGCATTATTTTCAACTTTTAGTCATTCTTCCCTTGTTGAAGTTGAATATGATAAACAATATTCTATTACCATTATTTATCTTGCAATTGTAAATTTTATCTTTAGTTATCTATGATGACTTACAATTTTTATGTAATTGACCATTTCGAAATTGTCATATGCTTTTTGTTTATATTAATATTTCCCCTAGTCATGTATTTTGTTTATATAAATATTTCTTTTAGTCACGCATTTGTAAATCAACGATTTACATCCATTGTTTTCTTTTGGTGATATTTTCCTTGTCTGTCAGTCATCTATATATCTATTTTGTTTTTCAAACTGTTTCTATTGATTTCAGGAAACCATCACCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAGAGAAATCTTCAGTATGTTTTTTCACTCGCCTTCTTTAGCTTCTAACAATTATCCTGATGGATTAATGCAGTTTTGTTTTCATATCATTCTTTGTTAAACGTTACTAGTAGAGCAAAGAGTATAGATGGGGAGCTGTCTTGTGATGAGGTTTGGGAGGTGGTGAGGTTCAATGCCTCATGAGCATCAGTCGCTAGGTCTTGTTGTAGTTTTGTGGGACTGTTTTGTTGGGTTTGTTTTTTTTGTATGCCCTTGTTTATTCATTTTTCTCCATGATAGTTTGATCTCTTAAAAAAAAATCAAAGATTTAAACAAAAACAACTTTATTTCAAGCTTCAGTACATCATCTTAAGGTTATACTTTGACCTGATGAATGTAGCATTTTGTCTTAAAAATTAAACTTGGTATGTTCTTGAACATATGCCTTTATGTAGTAGATTCAATTCAACATAGTTTGTTAGAATGATCATTGACCATGTTGTTTTGTCCTTAACAATTGAGTAATTTGTCATATCGATTACTCTTCATCATATCTGTTTTGTTAAGTTACTGTATGTGCAGTCCTTCCTTTCCTCTCCTTTCCTCATGAATATGTTGCATAACTAGTTGTAAATTTGTTAGTCTCATTCAATCAAAAAGGTCACTCTCAAATATGAATTTTTCTCCAAAATATCTTTATGGTTAAGCTTCATGATTAATGGATTGGATAGGTAATCCGTTACCTTCTTTTTTTTTTTTTTTTTTAATAATTATTTTAACTACTTTTGTAGCTCTGATGAATTTATTTTTTCCGATACCTTCTAGGTAATTTTGGTGAAGTAGTCAATGTTGAGCTGGCAATGGATCGCACAGTGAGTTTGTACCATGTTGTATTTAACAAGTTTTTCTTGAATAATATATTGATATCTGTTTAAATGCGTACAGGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGTATGTTTTGCTTAAATGTTCAAGTACTTGAAGTGCATCTATTGATAATGCCATCACTGGGAAATGATTGTGATGATTGGCTAACTGTAGGCCCAAATTGATGGAAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAAATGGCATCACCTCCAAGGACTGCTGCAGCTGCTTCTAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGACGATATGAAAAGACAGAGAGAACGTATAACTCATTAATTATATATTTTTTCAATGTCTAACGTTCCCCCCCTATTATTCTACTTTATTTTATTTTTCATGGGAGTATATTATTTTAGTGATTTGTTTCTGGTTTGTTACATCAGCTTCACCTCGTCGAAAGCCTCCGTCACCTAGAAGACGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCCAGAAGACAACCTGATTCTCCACGCCGCCGTCCGGAGTCTCCTCCCCGTCGCCGTGTTGACTCTCCTCCTAGAAGGAGGCCTGCATCACCAATGAGAGGTGGCCGTTCCCCATCACCTTTGGGAAGGCGACATAGATCTCCCCCAAGGTTGAGTATCATCCCCGCCCCACCCACCCACACACACACACACACCAAATTTATCTCTTTCTTTTAATGGTGAGAGCATCAACATTGTTTAACTTTGGTGATTAGGCCCTCTCCAAGAAGAATTCGTGGCAGCCCTGTTCGGAGACGTTCACCACCTCCTCCTAGGCGCCGGTATTATGCATTGACTGTTTTAGAAGATCGTAAATCTGTTCTCTTGCAATTTGAATGATACATGGATATGTATATTGTTGCTAACTTCACAAATATATCATATAGTGACAACGTTGACTATTAATGTCTTGCTTCACTTGTTAAATTGTATCCTATTATTTTCGAGTTGGAGCATTTGTTTGGAGAGTATTAAATTATGCAGAAAAAGCATATGTAAACATTATTTTTTTTATCTTGAATTATTGTTTTTAGAGTACGGGTTTTTATTCTTTGAAGATTTTTAGTCACTGTAGTTATTTTGAAGAATACTAAAAGTTGCATCAAGTTTAATTTAGTTATGCGGTTCTTGTTGGCCATTGATGATTTTGTTATGCCTAGCTACAGGTAAACTGTGGTTTTTGGGTGATCCAAGCAAATTCAAAGTAATGCTATGGTTGACTTAGAATGAAGTAATAGCTAGTAGAGTGTAACTTTTGATGTAACTATTTAAAAATTTACTTGTTTCCATTATGGTTCAGAGGTGTTCCTACAGTTGAATCGTAGGTATTAGAAGAACGGTGAATGAGGGCATGATTACTTCTAATGTTTGAGAAATTAACATATTTAAGCTTCACAGTGAGCTTTTAATTTCTTGGTCACTGGTTGAGCATGGTTTATACTTGAATATGTTGTAGTCTGATTAAGTGGTTTCAGTTGCATTTATTCTTCGGTTAATGAGTGTTACATAATTAATTGTGTTTCTTTTTCAGTACACCTCCTCGACGGGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCCATTAGAAGACCAGGTCGATCACGTTCCCGGTCATTTTCACCACGGAGGTATCTGGATGCATAATGAGTTTTTTTTTATTCATAATTGCCTTTTGAAGAAAAATTATTTTATATTGTTTGATTGGTCCACCCTGTGTTTGGGGGGCCATAAATCAAAATACGAAGTAGATCACAGAAGTTACTACCATTGTCGTTGATCAAGAAAGGAAGATAATCACAATAAACTCTCTGAGCTGTCTCAACTGTGCTAGGAAACAATTGTGCGGTGACATATTGCATTAATTCATTTGAAGGTTCTCCTAGTTCTATTTGTCCATCATAGATAGAGCCTTGCTAGTACTGAACCAAAGAATTATATTGGCGCAGAAACTAGGTCTCATAAGATGTTTGAATAAAGATTGGAAGTCAATTGTGTGGTGACATTGCGTTTGGGCCCCGAGGGATCCTTCCGTTCTAGACAATGGAAACCAGCTATTGTAGGATAGCTAATCTAAAGTTGAGCATTCACAGTGCGTGCTTTTAGTATTTGTAAAGGGCATAACGTCTCAGATGCTCTTGGCTAAAGCAAGCCAATTGTCTTTCAAAAGAAGCATACATGTGCAGATGCATCATCTTTTTTTCAATTGTCGAACAGCTAGGCCTAGACCTAAATATTGCTGTTTGGTGTTGTGATCGTGGGATTTAGATTTTTTAAGGCTAGTTACAAGTTCTGAATTTAACAACTTAAGCATACCATTACTTATGTATAAATTATAATGATGCTTAGAAACTAAGCTTTAACGATCTCAGTTTCCTATTTACTACCCAAGACATTGTGTAAATCAGAAATATCTCCAAATTAGTTGCATAACATTTGTATTATAAGGTTAGGTGGCTAGTTTAGTATCCATATCATCTGCTACTTTACCCTTTCTATGATCGTTTACTTTCCCTAACTATATAATATTCCACAGAGCTACTACCCTTACTAGTTTTTTTTTGTCCACTGTAAGCATATATTTATACTTAGTTTTCTTACGGTACAGAGGTCGGCCGGGAGCTGCTGGTAGACGTGGGAGATCATCATCTTACTCTGCATCGCCAAGTCCACGGAAGGTTCGTAGTGATTAATCTTGCCTTTATTCTCTTCTCTGGGCTTGTTGCTTACTTTTCCTTGCATCCAAAGTCACTTCAATATTCCTTATTTATGTTACAGGTCGCCAGGAGAGTATCTCGCAGTCCAAGAAGGTAAACCCGTGCATTAAATAAAATATTGGTCGACATGTCGATATTCATATCTGGATGTTGAGAATATTAGGGCTTGGTTCTTGGACCTTTTGCTGTTTCTTCTTTGACTAACTATGAATGTTTTTCCAAACCCGCTAACCACTGAGCTTCTAGATAAACAAGATGACCAGGGTACAGTGCCCATTTTATAGTGAGTTTAGGATGACATCTGAAAAAGATAAAGTACCAACTTCTTAGCACTAATTAAGTGCTTCTAAAAGTAAGCACTTTAATGCTTTTCAAGTGCCTTTAGAGTTCTGTGATCTTGGTTGTGTAGCCAAACACTGCAAAGTTATAAAATAAAGTATTTTTAGTTCGCTAAAATCACTTTTTACTGTTCTAAAAGTCATTAGAACAGCTTTTAATCTTGTATTCTTGTCGTCGTTATTATAATGCGATTGTTTTTGCTGTGTAGTAGGCCATTGAGAGGTAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCGCAAGCCATAAGAACTCGTCTACGTATCGTTCGGTCTCTCTCTAATTCTCTCTTGTTCATCTAGTGAAAAGCCTTCTTGTAGCAAAAATATTTGGATTAAATGCCATTTAGGTTTAGTTTCCAGTTATTATGAATTGTTTACATATGCTTTGTTCCAGCAGCTGCAGTCTGTAGTAATATTACACTTCTACAATAGAAAGCCCAGACGTCGAGTTTCCCGTTTTCAAGCCGTTATATTTTATGGCGTTTTTGTGTGGAAGATTCGAACCTTTGATTTGATGTCTTGATTGTGACTATACGTTTTGTATCAGTTGAGCCATGTTCGACTTGTTTAAGACGTGATTGGTAGGCAATTTAAATACTAAAAGTTATGTTCGTGTTTGTGTGTTTGGTAGCAAATTT

mRNA sequence

TTCTCTCTCTCATGTTTTCGTCATTTACGTGTCGACCATTTTTTGTGTTGCTTCTCCTTTCACTATCTCTAATCTCGAACGATACCAGACGGGTTTAAGCTAGGGTTCCGATTCTTGCAGCTCTTGCTGGCCATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCTCCGTCGAGATCGGGATCCTCTTCACGTTCCCGCTCATACTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCACGCTCCAGGTCACGGTCTGTATCTGTGTCCCATTCCAGGTCCATTTCCTCGTCGTCGTCTCCCTCCCGCAGTGCTAGTTCTCGGAGCCGAAGTCCCCCTCCTCAGAGAAAGAGGAAACCATCACCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAGAGAAATCTTCAGTAATTTTGGTGAAGTAGTCAATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCCCAAATTGATGGAAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAAATGGCATCACCTCCAAGGACTGCTGCAGCTGCTTCTAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGACGATATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCGTCACCTAGAAGACGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCCAGAAGACAACCTGATTCTCCACGCCGCCGTCCGGAGTCTCCTCCCCGTCGCCGTGTTGACTCTCCTCCTAGAAGGAGGCCTGCATCACCAATGAGAGGTGGCCGTTCCCCATCACCTTTGGGAAGGCGACATAGATCTCCCCCAAGGCCCTCTCCAAGAAGAATTCGTGGCAGCCCTGTTCGGAGACGTTCACCACCTCCTCCTAGGCGCCGTACACCTCCTCGACGGGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCCATTAGAAGACCAGGTCGATCACGTTCCCGGTCATTTTCACCACGGAGAGGTCGGCCGGGAGCTGCTGGTAGACGTGGGAGATCATCATCTTACTCTGCATCGCCAAGTCCACGGAAGGTCGCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCATTGAGAGGTAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCGCAAGCCATAAGAACTCGTCTACGTATCGTTCGGTCTCTCTCTAATTCTCTCTTGTTCATCTAGTGAAAAGCCTTCTTGTAGCAAAAATATTTGGATTAAATGCCATTTAGGTTTAGTTTCCAGTTATTATGAATTGTTTACATATGCTTTGTTCCAGCAGCTGCAGTCTGTAGTAATATTACACTTCTACAATAGAAAGCCCAGACGTCGAGTTTCCCGTTTTCAAGCCGTTATATTTTATGGCGTTTTTGTGTGGAAGATTCGAACCTTTGATTTGATGTCTTGATTGTGACTATACGTTTTGTATCAGTTGAGCCATGTTCGACTTGTTTAAGACGTGATTGGTAGGCAATTTAAATACTAAAAGTTATGTTCGTGTTTGTGTGTTTGGTAGCAAATTT

Coding sequence (CDS)

ATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCTCCGTCGAGATCGGGATCCTCTTCACGTTCCCGCTCATACTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCACGCTCCAGGTCACGGTCTGTATCTGTGTCCCATTCCAGGTCCATTTCCTCGTCGTCGTCTCCCTCCCGCAGTGCTAGTTCTCGGAGCCGAAGTCCCCCTCCTCAGAGAAAGAGGAAACCATCACCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAGAGAAATCTTCAGTAATTTTGGTGAAGTAGTCAATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCCCAAATTGATGGAAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAAATGGCATCACCTCCAAGGACTGCTGCAGCTGCTTCTAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGACGATATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCGTCACCTAGAAGACGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCCAGAAGACAACCTGATTCTCCACGCCGCCGTCCGGAGTCTCCTCCCCGTCGCCGTGTTGACTCTCCTCCTAGAAGGAGGCCTGCATCACCAATGAGAGGTGGCCGTTCCCCATCACCTTTGGGAAGGCGACATAGATCTCCCCCAAGGCCCTCTCCAAGAAGAATTCGTGGCAGCCCTGTTCGGAGACGTTCACCACCTCCTCCTAGGCGCCGTACACCTCCTCGACGGGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCCATTAGAAGACCAGGTCGATCACGTTCCCGGTCATTTTCACCACGGAGAGGTCGGCCGGGAGCTGCTGGTAGACGTGGGAGATCATCATCTTACTCTGCATCGCCAAGTCCACGGAAGGTCGCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCATTGAGAGGTAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCGCAAGCCATAA

Protein sequence

MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSASSRSRSPPPQRKRKPSPVRESLVLHIDALSRNVHEGHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPGAAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP

Homology

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BLAST of Cp4.1LG02g02450 vs. ExPASy Swiss-Prot
Match: Q9SEE9 (Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR45 PE=1 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 5.2e-106
Identity = 286/417 (68.59%), Postives = 322/417 (77.22%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRS PS SGSSSRS S S S S S SRS SRSR    S SRS+SSSSSPSRS 
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-SPSRSISRSR----SRSRSLSSSSSPSRSV 60

Query: 61  SSRSRSP---------PPQRKRKPSP-------------VRESLVLHIDALSRNVHEGHL 120
           SS SRSP         P +R R P P             V+ESLVLH+D+LSRNV+E HL
Sbjct: 61  SSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHL 120

Query: 121 REIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFT 180
           +EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R+DAEKAQ+YMDGAQIDG V++A FT
Sbjct: 121 KEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFT 180

Query: 181 LPQRQKMASPPRTAAAASKRDGPKPENVGADAEKD-DMKRQREPSPRRKPP-SPRRRSPV 240
           LP RQK++SPP+  +AA KRD PK +N  ADAEKD   +R RE SP+RK   SPRRRSP+
Sbjct: 181 LPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRRSPL 240

Query: 241 ARRGGSPRRQ-PDSP-RRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPS 300
            RRG SPRR+ PDSP RRRP SP RRR D+PPRRRPASP RG    SP  RR+RSPPR S
Sbjct: 241 PRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGS 300

Query: 301 PRRIRGSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRR 360
           PRRIRGSPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRPGRSRS S SPR+
Sbjct: 301 PRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPRK 360

Query: 361 GRPGAAGRRGRSSSYSASPSPRKVARRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 388
           GR G AGRRGRSSSYS+SPSPR++ R++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 GR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 409

[Close]

BLAST of Cp4.1LG02g02450 vs. ExPASy Swiss-Prot
Match: Q3KPW1 (RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis OX=8355 GN=rnps1-b PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-17
Identity = 104/255 (40.78%), Postives = 130/255 (50.98%), Query Frame = 0


Query: 5   SRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSASSRS 64
           ++ RRS  S S SSSRSRS S S S S S S S S S S + SRS SSSSS S S+SS S
Sbjct: 39  AKKRRSASSGSSSSSRSRSSSSSSSSSGSSSGSSSGSSSSASSRSGSSSSSRSSSSSSSS 98

Query: 65  RSPPPQRKR----------------------KPSPVRESLVLHIDALSRNVHEGHLREIF 124
            SP P R+R                      + SP      +HI  L+RNV + H+ EIF
Sbjct: 99  GSPSPSRRRHDNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIF 158

Query: 125 SNFGEVVNVELAMDR-TVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQ 184
           S +G++  +++ +DR   +L KGY YVEF+   +AEKA  +MDG QIDG  I A   L  
Sbjct: 159 STYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLTP 218

Query: 185 RQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGG 237
               A P R   +  +R  P P           M R+  P  RR+  SPRRRSPV RR  
Sbjct: 219 WPMRAMPRR--FSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRRRSR 278

[Close]

BLAST of Cp4.1LG02g02450 vs. ExPASy Swiss-Prot
Match: Q5XG24 (RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis OX=8355 GN=rnps1-a PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-16
Identity = 106/260 (40.77%), Postives = 131/260 (50.38%), Query Frame = 0


Query: 5   SRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSASSRS 64
           ++ RRS  S S SSS SRS S S S S S S S S S S + SRS SSSSS S S+SS S
Sbjct: 39  AKKRRSGSSGSSSSSHSRSSSSSSSSSGSSSGSSSGSSSSASSRSGSSSSSRSSSSSSSS 98

Query: 65  RSPPPQRKR----------------------KPSPVRESLVLHIDALSRNVHEGHLREIF 124
            SP P R+R                      + SP      +HI  L+RNV + H+ EIF
Sbjct: 99  GSPSPSRRRHDNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIF 158

Query: 125 SNFGEVVNVELAMDR-TVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTL-- 184
           S +G++  +++ +DR   +L KGY YVEF+   +AEKA  +MDG QIDG  I A   L  
Sbjct: 159 STYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLTP 218

Query: 185 -PQR--QKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPV 237
            P R   +  SPPR       R  P P           M R+  P  RR+  SPRRRSPV
Sbjct: 219 WPMRPMPRRFSPPR-------RMLPPP----------PMWRRSPPRMRRRSRSPRRRSPV 278

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BLAST of Cp4.1LG02g02450 vs. ExPASy Swiss-Prot
Match: Q28E41 (RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis OX=8364 GN=rnps1 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-16
Identity = 106/256 (41.41%), Postives = 130/256 (50.78%), Query Frame = 0


Query: 5   SRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVS-HSRSISSSSSPSRSASSR 64
           +R RRS  S S SSSRSRS S S S S S S S S S S S  SRS SSSSS S S+SS 
Sbjct: 64  ARKRRSASSGSSSSSRSRSSSSSSSSSGSSSGSSSGSSSSSASSRSGSSSSSRSSSSSSS 123

Query: 65  SRSPPPQRKR----------------------KPSPVRESLVLHIDALSRNVHEGHLREI 124
           S SP P R+R                      + SP      +HI  L+RNV + H+ EI
Sbjct: 124 SGSPSPSRRRHDNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEI 183

Query: 125 FSNFGEVVNVELAMDR-TVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLP 184
           FS +G++  +++ +DR   +L KGY YVEF+   +AEKA  +MDG QIDG  I A   L 
Sbjct: 184 FSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLT 243

Query: 185 QRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARRG 237
                A P R   +  +R  P P           M R+  P  RR+  SPRRRSPV RR 
Sbjct: 244 PWPMRAMPRR--FSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRRRS 303

[Close]

BLAST of Cp4.1LG02g02450 vs. ExPASy Swiss-Prot
Match: Q15287 (RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-16
Identity = 100/243 (41.15%), Postives = 132/243 (54.32%), Query Frame = 0


Query: 5   SRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSS-SPSR----- 64
           +R R S  S SGSS+ + S SGS S SS+ SRS S S S S S S SS S SPSR     
Sbjct: 75  TRSRSSSTSSSGSSTSTGSSSGSSS-SSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 134

Query: 65  SASSRSRSPPPQR----KRKPSPVRESLVLHIDALSRNVHEGHLREIFSNFGEVVNVELA 124
              SRS+S PP+R    +++ SP  +   +HI  L+RNV + H+ EIFS +G++  +++ 
Sbjct: 135 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMP 194

Query: 125 MDRT-VNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMASPPRTAA 184
           ++R   +L KGY YVEF+   +AEKA  +MDG QIDG  I A   L    +   PPR  +
Sbjct: 195 VERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPR--PPPRRFS 254

Query: 185 AASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPRRQPDSPRRR 237
              +   P P           M R+  P  RR+  SPRRRSPV RR  SP R+    R  
Sbjct: 255 PPRRMLPPPP-----------MWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 303

[Close]

BLAST of Cp4.1LG02g02450 vs. NCBI nr
Match: XP_023525494.1 (serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG7037487.1 Serine/arginine-rich splicing factor SR45 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 646 bits (1667), Expect = 2.18e-231
Identity = 387/410 (94.39%), Postives = 387/410 (94.39%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Cp4.1LG02g02450 vs. NCBI nr
Match: XP_022940299.1 (serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 645 bits (1664), Expect = 6.24e-231
Identity = 386/410 (94.15%), Postives = 387/410 (94.39%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Cp4.1LG02g02450 vs. NCBI nr
Match: XP_022981103.1 (serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 642 bits (1655), Expect = 1.46e-229
Identity = 384/410 (93.66%), Postives = 386/410 (94.15%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDIKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRR PDSPRRRP+SPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRHPDSPRRRPDSPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Cp4.1LG02g02450 vs. NCBI nr
Match: XP_023525493.1 (serine/arginine-rich splicing factor SR45-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 642 bits (1655), Expect = 1.52e-229
Identity = 387/411 (94.16%), Postives = 387/411 (94.16%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPR-RPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPR RPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Cp4.1LG02g02450 vs. NCBI nr
Match: XP_022940297.1 (serine/arginine-rich splicing factor SR45-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 640 bits (1652), Expect = 4.35e-229
Identity = 386/411 (93.92%), Postives = 387/411 (94.16%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPR-RPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPR RPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Cp4.1LG02g02450 vs. ExPASy TrEMBL
Match: A0A6J1FJN7 (serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445960 PE=4 SV=1)

HSP 1 Score: 645 bits (1664), Expect = 3.02e-231
Identity = 386/410 (94.15%), Postives = 387/410 (94.39%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Cp4.1LG02g02450 vs. ExPASy TrEMBL
Match: A0A6J1J163 (serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480352 PE=4 SV=1)

HSP 1 Score: 642 bits (1655), Expect = 7.08e-230
Identity = 384/410 (93.66%), Postives = 386/410 (94.15%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDIKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRR PDSPRRRP+SPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRHPDSPRRRPDSPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Cp4.1LG02g02450 vs. ExPASy TrEMBL
Match: A0A6J1FJ74 (serine/arginine-rich splicing factor SR45-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445960 PE=4 SV=1)

HSP 1 Score: 640 bits (1652), Expect = 2.10e-229
Identity = 386/411 (93.92%), Postives = 387/411 (94.16%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPR-RPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPR RPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Cp4.1LG02g02450 vs. ExPASy TrEMBL
Match: A0A6J1IT16 (serine/arginine-rich splicing factor SR45-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480352 PE=4 SV=1)

HSP 1 Score: 637 bits (1643), Expect = 4.94e-228
Identity = 384/411 (93.43%), Postives = 386/411 (93.92%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDIKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRR PDSPRRRP+SPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRHPDSPRRRPDSPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPR-RPLRGRSSSRSSSSSSPPRKP 387
           AAGRRGRSSSYSASPSPRKVARRVSRSPR RPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Cp4.1LG02g02450 vs. ExPASy TrEMBL
Match: A0A0A0KZM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV=1)

HSP 1 Score: 593 bits (1529), Expect = 1.49e-210
Identity = 366/419 (87.35%), Postives = 371/419 (88.54%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRS--ISSSSSPSR 60
           MAKPSRGRRSPPS S SSSRSRS+SGSDSRSSSRSRSRS SVS S SRS  ISSSSS SR
Sbjct: 1   MAKPSRGRRSPPSGSASSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SASSRSRSPPPQRK-----------------------RKPSPVRESLVLHIDALSRNVHE 120
           S SSRSRSPPPQRK                       RKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPPPQRKSPTETARRSRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180
           GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA
Sbjct: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180

Query: 181 RFTLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKM +PPRT A   KRDGPKPENVG DAEKDDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDAEKDDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 VARRGGSPRRQPDSPRRRPESPPRRRVDSP-------PRRRPASPMRGGRSPSPLGRRHR 300
           VARRGGSPRRQPDSPRRRP+SPPRRR++SP       PRRRPASPMRGGRSPSPL RRHR
Sbjct: 241 VARRGGSPRRQPDSPRRRPDSPPRRRIESPFRRDSPPPRRRPASPMRGGRSPSPLARRHR 300

Query: 301 SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRS 360
           SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRP RSRSRS
Sbjct: 301 SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360

Query: 361 FSPRRGRPGAAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 387
           FSPRRGRPGAAGRRGRSSSYSASPSPRKV RRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 FSPRRGRPGAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 419

[Close]

BLAST of Cp4.1LG02g02450 vs. TAIR 10
Match: AT1G16610.1 (arginine/serine-rich 45 )

HSP 1 Score: 386.0 bits (990), Expect = 3.7e-107
Identity = 286/417 (68.59%), Postives = 322/417 (77.22%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRS PS SGSSSRS S S S S S SRS SRSR    S SRS+SSSSSPSRS 
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-SPSRSISRSR----SRSRSLSSSSSPSRSV 60

Query: 61  SSRSRSP---------PPQRKRKPSP-------------VRESLVLHIDALSRNVHEGHL 120
           SS SRSP         P +R R P P             V+ESLVLH+D+LSRNV+E HL
Sbjct: 61  SSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHL 120

Query: 121 REIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFT 180
           +EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R+DAEKAQ+YMDGAQIDG V++A FT
Sbjct: 121 KEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFT 180

Query: 181 LPQRQKMASPPRTAAAASKRDGPKPENVGADAEKD-DMKRQREPSPRRKPP-SPRRRSPV 240
           LP RQK++SPP+  +AA KRD PK +N  ADAEKD   +R RE SP+RK   SPRRRSP+
Sbjct: 181 LPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRRSPL 240

Query: 241 ARRGGSPRRQ-PDSP-RRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPS 300
            RRG SPRR+ PDSP RRRP SP RRR D+PPRRRPASP RG    SP  RR+RSPPR S
Sbjct: 241 PRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGS 300

Query: 301 PRRIRGSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRR 360
           PRRIRGSPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRPGRSRS S SPR+
Sbjct: 301 PRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPRK 360

Query: 361 GRPGAAGRRGRSSSYSASPSPRKVARRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 388
           GR G AGRRGRSSSYS+SPSPR++ R++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 GR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 409

[Close]

BLAST of Cp4.1LG02g02450 vs. TAIR 10
Match: AT1G16610.2 (arginine/serine-rich 45 )

HSP 1 Score: 379.4 bits (973), Expect = 3.4e-105
Identity = 282/415 (67.95%), Postives = 318/415 (76.63%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRS PS SGSSSRS S S S S S SRS SRSR    S SRS+SSSSSPSRS 
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-SPSRSISRSR----SRSRSLSSSSSPSRSV 60

Query: 61  SSRSRSP---------PPQRKRKPSP-------------VRESLVLHIDALSRNVHEGHL 120
           SS SRSP         P +R R P P             V+ESLVLH+D+LSRNV+E HL
Sbjct: 61  SSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHL 120

Query: 121 REIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFT 180
           +EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R+DAEKAQ+YMDGAQIDG V++A FT
Sbjct: 121 KEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFT 180

Query: 181 LPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVAR 240
           LP RQK++SPP+  +AA KRD PK +N  ADAEKD   R+    PR +  SPRRRSP+ R
Sbjct: 181 LPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRR----PRER-LSPRRRSPLPR 240

Query: 241 RGGSPRRQ-PDSP-RRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPR 300
           RG SPRR+ PDSP RRRP SP RRR D+PPRRRPASP RG    SP  RR+RSPPR SPR
Sbjct: 241 RGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPR 300

Query: 301 RIRGSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGR 360
           RIRGSPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRPGRSRS S SPR+GR
Sbjct: 301 RIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPRKGR 360

Query: 361 PGAAGRRGRSSSYSASPSPRKVARRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 388
            G AGRRGRSSSYS+SPSPR++ R++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 -GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 402

[Close]

BLAST of Cp4.1LG02g02450 vs. TAIR 10
Match: AT1G16610.3 (arginine/serine-rich 45 )

HSP 1 Score: 379.0 bits (972), Expect = 4.5e-105
Identity = 285/427 (66.74%), Postives = 321/427 (75.18%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRS PS SGSSSRS S S S S S SRS SRSR    S SRS+SSSSSPSRS 
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-SPSRSISRSR----SRSRSLSSSSSPSRSV 60

Query: 61  SSRSRSP---------PPQRKRKPSP-------------VRESLVLHIDALSRNVHEGHL 120
           SS SRSP         P +R R P P             V+ESLVLH+D+LSRNV+E HL
Sbjct: 61  SSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHL 120

Query: 121 REIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFT 180
           +EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R+DAEKAQ+YMDGAQIDG V++A FT
Sbjct: 121 KEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFT 180

Query: 181 LPQRQKMASPPRTAAAASKRDGPKPENVGADAEKD-DMKRQREPSPRRKPP-SPRRRSPV 240
           LP RQK++SPP+  +AA KRD PK +N  ADAEKD   +R RE SP+RK   SPRRRSP+
Sbjct: 181 LPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRRSPL 240

Query: 241 ARRGGSPRRQ-PDSP-RRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPS 300
            RRG SPRR+ PDSP RRRP SP RRR D+PPRRRPASP RG    SP  RR+RSPPR S
Sbjct: 241 PRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGS 300

Query: 301 PRRIRGSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRR 360
           PRRIRGSPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRPGRSRS S SPR+
Sbjct: 301 PRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPRK 360

Query: 361 ----------GRPGAAGRRGRSSSYSASPSPRKVARRV--SRSPRRPLRG-RSSSRSSSS 388
                     G  G AGRRGRSSSYS+SPSPR++ R++  SRSP+RPLRG RSSS SSSS
Sbjct: 361 YVGTHLNFFLGGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSS 420

[Close]

BLAST of Cp4.1LG02g02450 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 44.3 bits (103), Expect = 2.6e-04
Identity = 105/295 (35.59%), Postives = 131/295 (44.41%), Query Frame = 0


Query: 48  RSISSSSSPSRSASSRSRSPPPQRKRKPSPVRESLVLHIDALSRNVHEGHLREIFSNFGE 107
           R  S + SP R    R RSP P+ +           L +  L  +  +  LR+ F  FG 
Sbjct: 2   RGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGP 61

Query: 108 VVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMAS 167
           V ++ L  D     P+G+G+V+F   +DA  A+ +MDG  + G  +   F    R+K   
Sbjct: 62  VKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK--- 121

Query: 168 PPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPS--PRRRSPVARRGGSPRR 227
              T   A +R G                  R    RR PP    R RSP  RRG S  R
Sbjct: 122 --PTEMRARERGG-----------------GRFRDRRRTPPRYYSRSRSPPPRRGRSRSR 181

Query: 228 QPD----SPRR---RPESPPRRRVDS--PPRRRPASPMRGGRSPSPLGRRHRSPPRPSPR 287
             D     PRR   R  SP   R D      R PAS    GRS +P+  + RS   PSPR
Sbjct: 182 SGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRS-LSPSPR 241

Query: 288 R-IRGSPVRRRSPPPPRRRT-PPRRARS-PPRRSPVVRRRSRSPIRRPGRSRSRS 329
           R I  SP R RSP P R R+  PRR+ S  PRRS   RR  RS    P RSRS+S
Sbjct: 242 RSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRSQS 273

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEE9	5.2e-106	68.59	Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR4...	[more]
Q3KPW1	2.0e-17	40.78	RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis OX=8355 GN=rnp...	[more]
Q5XG24	1.0e-16	40.77	RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis OX=8355 GN=rnp...	[more]
Q28E41	1.0e-16	41.41	RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis OX=8364 GN=r...	[more]
Q15287	5.0e-16	41.15	RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 P...	[more]

BLAST of Cp4.1LG02g02450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525494.1	2.18e-231	94.39	serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita pepo subsp....	[more]
XP_022940299.1	6.24e-231	94.15	serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita moschata]	[more]
XP_022981103.1	1.46e-229	93.66	serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita maxima]	[more]
XP_023525493.1	1.52e-229	94.16	serine/arginine-rich splicing factor SR45-like isoform X1 [Cucurbita pepo subsp....	[more]
XP_022940297.1	4.35e-229	93.92	serine/arginine-rich splicing factor SR45-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG02g02450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJN7	3.02e-231	94.15	serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1J163	7.08e-230	93.66	serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1FJ74	2.10e-229	93.92	serine/arginine-rich splicing factor SR45-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1IT16	4.94e-228	93.43	serine/arginine-rich splicing factor SR45-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A0A0KZM9	1.49e-210	87.35	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV...	[more]

BLAST of Cp4.1LG02g02450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16610.1	3.7e-107	68.59	arginine/serine-rich 45	[more]
AT1G16610.2	3.4e-105	67.95	arginine/serine-rich 45	[more]
AT1G16610.3	4.5e-105	66.74	arginine/serine-rich 45	[more]
AT1G55310.1	2.6e-04	35.59	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 83..156 e-value: 1.2E-18 score: 77.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 86..154 e-value: 1.8E-14 score: 53.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 82..160 score: 16.005526
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 11..168 e-value: 4.0E-26 score: 93.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..330
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..387
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..387
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..66
None	No IPR available	PANTHER	PTHR15481:SF9	BNAA09G56240D PROTEIN	coord: 1..379
None	No IPR available	PANTHER	PTHR15481	RIBONUCLEIC ACID BINDING PROTEIN S1	coord: 1..379
IPR034201	RNPS1, RNA recognition motif	CDD	cd12365	RRM_RNPS1	coord: 84..156 e-value: 5.04394E-38 score: 129.598
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 16..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g02450.1	Cp4.1LG02g02450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding