Cp4.1LG02g01970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g01970
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Actin cytoskeleton-regulatory complex protein pan1, putative isoform 1
Location	Cp4.1LG02: 4293005 .. 4295687 (+)
RNA-Seq Expression	Cp4.1LG02g01970
Synteny	Cp4.1LG02g01970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGTTGGCCTCGAGCTTTTGTTGGAACTAAAATCCAATTTTTGAGAGAGAGCAAATCTCGGAGACGGGTTTTAGATTTACATGGAAACCAAACCAAACCCACATGAGTAAATTGCAGTGGGGATGGATCATACGACTCATTTTTCACCATCACAGTCGGTCTACCCATCAAATCAGGAGAGTGGAGCGAGGATTTGGGCGACTTAATCGATTTCTCACTCTCTTAATGTATTATTCTAAATCTCTTCATTCCTATTTTCAAATCTTCCCCTTCTTCTTCGATTCATTTGATTTCATTTGATTTTTTCTTCCGGACATGTAACTGGATTTCAGAACAATCTAACTCTTTCGAATCTTTTTCTTCTTCTTCCTCTTCCTCTGCGAGATTTTTGCTTTATTTTGCTGCTTCGATCCTTGTAATTCCTGTTGATTTTTGCCCGTTTTTGTTTTATTTTTGTACATCTCGTTCTTGTTTGTTCAGAATCCTTCATGCTTTGTGAAGTGGATTATAGAGCTAGGGTTTTAGTTTTAGTACTGAAAAAGCTGAAACTAGGGCGGGAGTTATTAGAATCTTAGGTTTTTGTTTTGAATCATAGATGGAAGATGATAGGAATGGGCGAAGAAGACCAAAAACGGAGGTGTTTTAATCATAGATTTGGGAGTTTTGGGACAATTGGTGGTATTAGTGGTAGATCTTCTTCTAAGAAACTAAAGCCGAAGCCTAGGAAAGTTCCTCAAAGAGGGCTTGGTGTTGCACAGCTTGAGAGGATTAGATTAGAAGAACAGCAGAAGAATGGTTCTGGTGCTGCTATTTTTTCATCTCCTTCTCCATTATCACCAACTAAATCCTCCTCTTATATGTCGTTACCGATCCCCGGTTTTCGCCAATCCAATCGTTCTTCATCTTCGTCTTCGTCTTCGTTCCTCTCGCTCCCTCCAGTGAGTCTCTCCTCTTCCACCTTAATGTTTGGACCTCCTCTGCCTGTTCTTAACATGGCTGTTAAAGATTCTTTCACTGTTCCATTGGTGGATCAAGCAAATAGTGGTGGATCTGAAACTGGGTTGTCTGCAGTTTCTATTTTGGAGCAGGGAAATGCTCTCAAATGGCATAGCTCTTGTGAATACTCTCTTGAGAAGGAGAATTGTGGGTTCCATCCCGGTCAGGCGTTTCGTTCGAATTTCGATTTCCCTTATGAAGTTAGCCCTCCCTGGCCTTCCCCTGAACTCCTTCAAAGAGCTCAGCAGAATCATTCACCTTCTCCAATGGTAATCCATGAGTTCTTCTTTTTCTTTGATTGTATTCTTTTTAATACCTATTTGATTAATGGAACTTGCAGGTGAATGTGTCTTCAACAACTTCACAGTCTTCTGGCCTTAATACCCAGATAGAGCCCCCTTCAAACCAAAGCTATTGTTATGGCAACTACTCAACCATCTGGGCAGACAAGGAAGAGAAGGTGAATTCATTTACTTTAACCATTATGGTTTTCTAGAGAGATTGATTATCCACCACTGAAACATGCTCTGCTCTTGTTTTGTGGAATTTCAGTATTTAGTTTAGCTCAAAGTATAGCTGTTTCTATGAAAATGATTGTGTAAATTATGTAGTTACAGATGGTTGGCACAAACAGATTGTCTCTCTTTAATCCAAACAATCCAACCGATCCGACTTTCAATTACAACCACTCTTCCTTAGCTATTCCAAATAGATCCAATGATTCTACTTCGCACGGCAGTGGAAGTGCACCGAGTTGTCGGTACGACAAACTCTGATTTGATCTTACTCTATATGCTCTAGATATACTGTAACAGCTCAAGCCTACCGCTAATAGATATTGTCGGGTGATTGTGAGATCCCACAAGCATTCTTTATAAGGGTGTGGAAACCTATTCTAACAAACGCGTTTTAAAAACCTTGAGGGAAGCACGTAGGATAATATCTGCTAGTGGTGGGCTTGCCTGTTACATATACAATGATATATGCCAAAAGTGTTGTTTCAATGTGCAGAGAGGTTCATACACCGAGTTCTTTGGAAAACGACAAAGAAGATGCTGACTTAAAAGGAAACTTCCTTAGCCTTGCTTGGACATCATGTCCAAGCTCGAACAATGTCAACTGCCCTCCAACTTATCCGCTTCTGCAGAACCATATGCATTCCGATCATCCTTTTCAGGTGAGAAAAGAGAGAGGGTGTAATGGTTTACATAGCTTTGGTTGTGTGTTTTGCTGAAAATCGTTTCTTTTTCGATTGATATGTCGAAGGGAGGAGGGAGACGCGGCAGGTCGACGGGAAAGCAGCCGTTCTACAGCTTCCTTCCACCTGCAGAGGCAAGAACGAGGAGAGAGAACGAGATGGCGGTGAACAACAAGTTCAAGGGCGAAGCTGGAGAAAGAGTTGATCTAGATTTGAAGCTGTAGAAGGTAGAGAGGCTAATGCTTTGTTGTTGGTACCAAAAGTGGCTGGTGTTCATATCATATCTTAGAAATCAATTGCTACAAAACCTGTATGTTACTCTCTTACAACTTCTGGTTTTTGGTTAAATTATGCAAAATTTATGTTAGGAAATCCAAATCTTAGCCTGAGGTTGGTTTCTTCTTGCTGCCTTTTTTGTTTTTAATTTTCTGTGGTTGGTGTCTAGCTCTAGTACCATTTGAAACCGCTCAAGCCCATCGCTAGTAGAA

mRNA sequence

TGGGTTGGCCTCGAGCTTTTGTTGGAACTAAAATCCAATTTTTGAGAGAGAGCAAATCTCGGAGACGGGTTTTAGATTTACATGGAAACCAAACCAAACCCACATGAGTAAATTGCAGTGGGGATGGATCATACGACTCATTTTTCACCATCACAGTCGGTCTACCCATCAAATCAGGAGAGTGGAGCGAGGATTTGGGCGACTTAATCGATTTCTCACTCTCTTAATGTATTATTCTAAATCTCTTCATTCCTATTTTCAAATCTTCCCCTTCTTCTTCGATTCATTTGATTTCATTTGATTTTTTCTTCCGGACATGTAACTGGATTTCAGAACAATCTAACTCTTTCGAATCTTTTTCTTCTTCTTCCTCTTCCTCTGCGAGATTTTTGCTTTATTTTGCTGCTTCGATCCTTGTAATTCCTGTTGATTTTTGCCCGTTTTTGTTTTATTTTTGTACATCTCGTTCTTGTTTGTTCAGAATCCTTCATGCTTTGTGAAGTGGATTATAGAGCTAGGGTTTTAGTTTTAGTACTGAAAAAGCTGAAACTAGGGCGGGAGTTATTAGAATCTTAGGTTTTTGTTTTGAATCATAGATGGAAGATGATAGGAATGGGCGAAGAAGACCAAAAACGGAGGTGTTTTAATCATAGATTTGGGAGTTTTGGGACAATTGGTGGTATTAGTGGTAGATCTTCTTCTAAGAAACTAAAGCCGAAGCCTAGGAAAGTTCCTCAAAGAGGGCTTGGTGTTGCACAGCTTGAGAGGATTAGATTAGAAGAACAGCAGAAGAATGGTTCTGGTGCTGCTATTTTTTCATCTCCTTCTCCATTATCACCAACTAAATCCTCCTCTTATATGTCGTTACCGATCCCCGGTTTTCGCCAATCCAATCGTTCTTCATCTTCGTCTTCGTCTTCGTTCCTCTCGCTCCCTCCAGTGAGTCTCTCCTCTTCCACCTTAATGTTTGGACCTCCTCTGCCTGTTCTTAACATGGCTGTTAAAGATTCTTTCACTGTTCCATTGGTGGATCAAGCAAATAGTGGTGGATCTGAAACTGGGTTGTCTGCAGTTTCTATTTTGGAGCAGGGAAATGCTCTCAAATGGCATAGCTCTTGTGAATACTCTCTTGAGAAGGAGAATTGTGGGTTCCATCCCGGTCAGGCGTTTCGTTCGAATTTCGATTTCCCTTATGAAGTTAGCCCTCCCTGGCCTTCCCCTGAACTCCTTCAAAGAGCTCAGCAGAATCATTCACCTTCTCCAATGGTGAATGTGTCTTCAACAACTTCACAGTCTTCTGGCCTTAATACCCAGATAGAGCCCCCTTCAAACCAAAGCTATTGTTATGGCAACTACTCAACCATCTGGGCAGACAAGGAAGAGAAGAACCATATGCATTCCGATCATCCTTTTCAGGGAGGAGGGAGACGCGGCAGGTCGACGGGAAAGCAGCCGTTCTACAGCTTCCTTCCACCTGCAGAGGCAAGAACGAGGAGAGAGAACGAGATGGCGGTGAACAACAAGTTCAAGGGCGAAGCTGGAGAAAGAGTTGATCTAGATTTGAAGCTGTAGAAGGTAGAGAGGCTAATGCTTTGTTGTTGGTACCAAAAGTGGCTGGTGTTCATATCATATCTTAGAAATCAATTGCTACAAAACCTGTATGTTACTCTCTTACAACTTCTGGTTTTTGGTTAAATTATGCAAAATTTATGTTAGGAAATCCAAATCTTAGCCTGAGGTTGGTTTCTTCTTGCTGCCTTTTTTGTTTTTAATTTTCTGTGGTTGGTGTCTAGCTCTAGTACCATTTGAAACCGCTCAAGCCCATCGCTAGTAGAA

Coding sequence (CDS)

ATGATAGGAATGGGCGAAGAAGACCAAAAACGGAGGTGTTTTAATCATAGATTTGGGAGTTTTGGGACAATTGGTGGTATTAGTGGTAGATCTTCTTCTAAGAAACTAAAGCCGAAGCCTAGGAAAGTTCCTCAAAGAGGGCTTGGTGTTGCACAGCTTGAGAGGATTAGATTAGAAGAACAGCAGAAGAATGGTTCTGGTGCTGCTATTTTTTCATCTCCTTCTCCATTATCACCAACTAAATCCTCCTCTTATATGTCGTTACCGATCCCCGGTTTTCGCCAATCCAATCGTTCTTCATCTTCGTCTTCGTCTTCGTTCCTCTCGCTCCCTCCAGTGAGTCTCTCCTCTTCCACCTTAATGTTTGGACCTCCTCTGCCTGTTCTTAACATGGCTGTTAAAGATTCTTTCACTGTTCCATTGGTGGATCAAGCAAATAGTGGTGGATCTGAAACTGGGTTGTCTGCAGTTTCTATTTTGGAGCAGGGAAATGCTCTCAAATGGCATAGCTCTTGTGAATACTCTCTTGAGAAGGAGAATTGTGGGTTCCATCCCGGTCAGGCGTTTCGTTCGAATTTCGATTTCCCTTATGAAGTTAGCCCTCCCTGGCCTTCCCCTGAACTCCTTCAAAGAGCTCAGCAGAATCATTCACCTTCTCCAATGGTGAATGTGTCTTCAACAACTTCACAGTCTTCTGGCCTTAATACCCAGATAGAGCCCCCTTCAAACCAAAGCTATTGTTATGGCAACTACTCAACCATCTGGGCAGACAAGGAAGAGAAGAACCATATGCATTCCGATCATCCTTTTCAGGGAGGAGGGAGACGCGGCAGGTCGACGGGAAAGCAGCCGTTCTACAGCTTCCTTCCACCTGCAGAGGCAAGAACGAGGAGAGAGAACGAGATGGCGGTGAACAACAAGTTCAAGGGCGAAGCTGGAGAAAGAGTTGATCTAGATTTGAAGCTGTAG

Protein sequence

MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEEQQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEPPSNQSYCYGNYSTIWADKEEKNHMHSDHPFQGGGRRGRSTGKQPFYSFLPPAEARTRRENEMAVNNKFKGEAGERVDLDLKL

Homology

[Close]

BLAST of Cp4.1LG02g01970 vs. NCBI nr
Match: XP_023523897.1 (uncharacterized protein LOC111788000 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 596 bits (1536), Expect = 1.73e-212
Identity = 322/415 (77.59%), Postives = 322/415 (77.59%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTL 120
           QQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTL
Sbjct: 61  QQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTL 120

Query: 121 MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN 180
           MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN
Sbjct: 121 MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN 180

Query: 181 CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP 240
           CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP
Sbjct: 181 CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP 240

Query: 241 PSNQSYCYGNYSTIWADKEEK--------------------------------------- 300
           PSNQSYCYGNYSTIWADKEEK                                       
Sbjct: 241 PSNQSYCYGNYSTIWADKEEKMVGTNRLSLFNPNNPTDPTFNYNHSSLAIPNRSNDSTSH 300

Query: 301 ------------------------------------------------------NHMHSD 322
                                                                 NHMHSD
Sbjct: 301 GSGSAPSCREVHTPSSLENDKEDADLKGNFLSLAWTSCPSSNNVNCPPTYPLLQNHMHSD 360

[Close]

BLAST of Cp4.1LG02g01970 vs. NCBI nr
Match: XP_023523896.1 (uncharacterized protein LOC111788000 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 595 bits (1534), Expect = 3.75e-212
Identity = 322/417 (77.22%), Postives = 322/417 (77.22%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTL 120
           QQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTL
Sbjct: 61  QQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTL 120

Query: 121 MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN 180
           MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN
Sbjct: 121 MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN 180

Query: 181 CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP 240
           CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP
Sbjct: 181 CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP 240

Query: 241 PSNQSYCYGNYSTIWADKEEK--------------------------------------- 300
           PSNQSYCYGNYSTIWADKEEK                                       
Sbjct: 241 PSNQSYCYGNYSTIWADKEEKLQMVGTNRLSLFNPNNPTDPTFNYNHSSLAIPNRSNDST 300

Query: 301 --------------------------------------------------------NHMH 322
                                                                   NHMH
Sbjct: 301 SHGSGSAPSCREVHTPSSLENDKEDADLKGNFLSLAWTSCPSSNNVNCPPTYPLLQNHMH 360

[Close]

BLAST of Cp4.1LG02g01970 vs. NCBI nr
Match: KAG6607903.1 (hypothetical protein SDJN03_01245, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 574 bits (1480), Expect = 6.47e-204
Identity = 316/420 (75.24%), Postives = 318/420 (75.71%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEE+QKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEEQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTL 120
           QQKNG+GAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSS  FLSLPPVSLSSSTL
Sbjct: 61  QQKNGAGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSS--FLSLPPVSLSSSTL 120

Query: 121 MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN 180
           MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN
Sbjct: 121 MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN 180

Query: 181 CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP 240
           CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP
Sbjct: 181 CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP 240

Query: 241 PSNQSYCYGNYSTIWADKEEK--------------------------------------- 300
           PSNQSYCYGNYS IWADKEEK                                       
Sbjct: 241 PSNQSYCYGNYSPIWADKEEKLQMVGTNRLSLFNPNNPTDPTFNYNHSSLAIPNRSNDST 300

Query: 301 --------------------------------------------------------NHMH 322
                                                                   NHMH
Sbjct: 301 SHGSGSAPSCREVRTPSSLENDKEDDDLKGNFLSLAWTSCPSSNNVNCPPTYPLLQNHMH 360

[Close]

BLAST of Cp4.1LG02g01970 vs. NCBI nr
Match: XP_022981261.1 (uncharacterized protein LOC111480450 isoform X2 [Cucurbita maxima])

HSP 1 Score: 567 bits (1461), Expect = 5.62e-201
Identity = 315/421 (74.82%), Postives = 318/421 (75.53%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEE+QKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEEQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGA--AIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSS 120
           QQKNG+GA  AIFSSPSPLSPTKSSSYMSLPIP FRQSNRSSSSSSSSFLSLPPVSLSSS
Sbjct: 61  QQKNGAGAGAAIFSSPSPLSPTKSSSYMSLPIPSFRQSNRSSSSSSSSFLSLPPVSLSSS 120

Query: 121 TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEK 180
           TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSC YSLEK
Sbjct: 121 TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCLYSLEK 180

Query: 181 ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQI 240
           ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQR QQNHSPSPMVNVSSTTSQSSGLNTQI
Sbjct: 181 ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRVQQNHSPSPMVNVSSTTSQSSGLNTQI 240

Query: 241 EPPSNQSYCYGNYSTIWADKEEK------------------------------------- 300
           EPPSNQSYCYGNYSTIWADKEEK                                     
Sbjct: 241 EPPSNQSYCYGNYSTIWADKEEKMVGTNRLSLFNPNNPTDPTFNYNHYSLAIPNRSNDST 300

Query: 301 --------------------------------------------------------NHMH 322
                                                                   NHMH
Sbjct: 301 SHGSGSAPSCREVHTPSSLENNKEDDDLKGNFLSLAWTSCPSSNNVNCPRTYPLLQNHMH 360

[Close]

BLAST of Cp4.1LG02g01970 vs. NCBI nr
Match: XP_022981260.1 (uncharacterized protein LOC111480450 isoform X1 [Cucurbita maxima])

HSP 1 Score: 566 bits (1459), Expect = 1.22e-200
Identity = 315/423 (74.47%), Postives = 318/423 (75.18%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEE+QKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEEQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGA--AIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSS 120
           QQKNG+GA  AIFSSPSPLSPTKSSSYMSLPIP FRQSNRSSSSSSSSFLSLPPVSLSSS
Sbjct: 61  QQKNGAGAGAAIFSSPSPLSPTKSSSYMSLPIPSFRQSNRSSSSSSSSFLSLPPVSLSSS 120

Query: 121 TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEK 180
           TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSC YSLEK
Sbjct: 121 TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCLYSLEK 180

Query: 181 ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQI 240
           ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQR QQNHSPSPMVNVSSTTSQSSGLNTQI
Sbjct: 181 ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRVQQNHSPSPMVNVSSTTSQSSGLNTQI 240

Query: 241 EPPSNQSYCYGNYSTIWADKEEK------------------------------------- 300
           EPPSNQSYCYGNYSTIWADKEEK                                     
Sbjct: 241 EPPSNQSYCYGNYSTIWADKEEKLQMVGTNRLSLFNPNNPTDPTFNYNHYSLAIPNRSND 300

Query: 301 ----------------------------------------------------------NH 322
                                                                     NH
Sbjct: 301 STSHGSGSAPSCREVHTPSSLENNKEDDDLKGNFLSLAWTSCPSSNNVNCPRTYPLLQNH 360

[Close]

BLAST of Cp4.1LG02g01970 vs. ExPASy TrEMBL
Match: A0A6J1IW23 (uncharacterized protein LOC111480450 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480450 PE=4 SV=1)

HSP 1 Score: 567 bits (1461), Expect = 2.72e-201
Identity = 315/421 (74.82%), Postives = 318/421 (75.53%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEE+QKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEEQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGA--AIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSS 120
           QQKNG+GA  AIFSSPSPLSPTKSSSYMSLPIP FRQSNRSSSSSSSSFLSLPPVSLSSS
Sbjct: 61  QQKNGAGAGAAIFSSPSPLSPTKSSSYMSLPIPSFRQSNRSSSSSSSSFLSLPPVSLSSS 120

Query: 121 TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEK 180
           TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSC YSLEK
Sbjct: 121 TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCLYSLEK 180

Query: 181 ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQI 240
           ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQR QQNHSPSPMVNVSSTTSQSSGLNTQI
Sbjct: 181 ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRVQQNHSPSPMVNVSSTTSQSSGLNTQI 240

Query: 241 EPPSNQSYCYGNYSTIWADKEEK------------------------------------- 300
           EPPSNQSYCYGNYSTIWADKEEK                                     
Sbjct: 241 EPPSNQSYCYGNYSTIWADKEEKMVGTNRLSLFNPNNPTDPTFNYNHYSLAIPNRSNDST 300

Query: 301 --------------------------------------------------------NHMH 322
                                                                   NHMH
Sbjct: 301 SHGSGSAPSCREVHTPSSLENNKEDDDLKGNFLSLAWTSCPSSNNVNCPRTYPLLQNHMH 360

[Close]

BLAST of Cp4.1LG02g01970 vs. ExPASy TrEMBL
Match: A0A6J1IZ00 (uncharacterized protein LOC111480450 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480450 PE=4 SV=1)

HSP 1 Score: 566 bits (1459), Expect = 5.90e-201
Identity = 315/423 (74.47%), Postives = 318/423 (75.18%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEE+QKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEEQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGA--AIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSS 120
           QQKNG+GA  AIFSSPSPLSPTKSSSYMSLPIP FRQSNRSSSSSSSSFLSLPPVSLSSS
Sbjct: 61  QQKNGAGAGAAIFSSPSPLSPTKSSSYMSLPIPSFRQSNRSSSSSSSSFLSLPPVSLSSS 120

Query: 121 TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEK 180
           TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSC YSLEK
Sbjct: 121 TLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCLYSLEK 180

Query: 181 ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQI 240
           ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQR QQNHSPSPMVNVSSTTSQSSGLNTQI
Sbjct: 181 ENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRVQQNHSPSPMVNVSSTTSQSSGLNTQI 240

Query: 241 EPPSNQSYCYGNYSTIWADKEEK------------------------------------- 300
           EPPSNQSYCYGNYSTIWADKEEK                                     
Sbjct: 241 EPPSNQSYCYGNYSTIWADKEEKLQMVGTNRLSLFNPNNPTDPTFNYNHYSLAIPNRSND 300

Query: 301 ----------------------------------------------------------NH 322
                                                                     NH
Sbjct: 301 STSHGSGSAPSCREVHTPSSLENNKEDDDLKGNFLSLAWTSCPSSNNVNCPRTYPLLQNH 360

[Close]

BLAST of Cp4.1LG02g01970 vs. ExPASy TrEMBL
Match: A0A6J1FMW9 (uncharacterized protein LOC111446628 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446628 PE=4 SV=1)

HSP 1 Score: 563 bits (1452), Expect = 6.15e-200
Identity = 313/422 (74.17%), Postives = 315/422 (74.64%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEE+QKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEEQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGA----AIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLS 120
           QQKNG+GA    AIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSS  FLSLPPVSL 
Sbjct: 61  QQKNGAGAGAGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSS--FLSLPPVSLP 120

Query: 121 SSTLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSL 180
           SSTLMFGPPLPVLNMAVKDSFT PLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSL
Sbjct: 121 SSTLMFGPPLPVLNMAVKDSFTFPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSL 180

Query: 181 EKENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNT 240
           EKENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTS SSGLNT
Sbjct: 181 EKENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSHSSGLNT 240

Query: 241 QIEPPSNQSYCYGNYSTIWADKEEK----------------------------------- 300
           QIEPPSNQSYCYGNYS IWADKEEK                                   
Sbjct: 241 QIEPPSNQSYCYGNYSPIWADKEEKMVGTNRLSLFNPNNPTDPTFNYNHSSLAIPNRSND 300

Query: 301 ----------------------------------------------------------NH 322
                                                                     NH
Sbjct: 301 STSHGSGSAPSCREVHTPSSLENDKEDDDLKGNFLSLAWTSCPSSNNVNCPPTYPLLQNH 360

[Close]

BLAST of Cp4.1LG02g01970 vs. ExPASy TrEMBL
Match: A0A6J1FRP1 (uncharacterized protein LOC111446628 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446628 PE=4 SV=1)

HSP 1 Score: 563 bits (1450), Expect = 1.33e-199
Identity = 313/424 (73.82%), Postives = 315/424 (74.29%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGMGEE+QKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE
Sbjct: 1   MIGMGEEEQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60

Query: 61  QQKNGSGA----AIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLS 120
           QQKNG+GA    AIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSS  FLSLPPVSL 
Sbjct: 61  QQKNGAGAGAGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSS--FLSLPPVSLP 120

Query: 121 SSTLMFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSL 180
           SSTLMFGPPLPVLNMAVKDSFT PLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSL
Sbjct: 121 SSTLMFGPPLPVLNMAVKDSFTFPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSL 180

Query: 181 EKENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNT 240
           EKENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTS SSGLNT
Sbjct: 181 EKENCGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSHSSGLNT 240

Query: 241 QIEPPSNQSYCYGNYSTIWADKEEK----------------------------------- 300
           QIEPPSNQSYCYGNYS IWADKEEK                                   
Sbjct: 241 QIEPPSNQSYCYGNYSPIWADKEEKLQMVGTNRLSLFNPNNPTDPTFNYNHSSLAIPNRS 300

Query: 301 ------------------------------------------------------------ 322
                                                                       
Sbjct: 301 NDSTSHGSGSAPSCREVHTPSSLENDKEDDDLKGNFLSLAWTSCPSSNNVNCPPTYPLLQ 360

[Close]

BLAST of Cp4.1LG02g01970 vs. ExPASy TrEMBL
Match: A0A5D3DWV3 (Actin cytoskeleton-regulatory complex protein pan1, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001170 PE=4 SV=1)

HSP 1 Score: 415 bits (1066), Expect = 3.76e-141
Identity = 218/264 (82.58%), Postives = 235/264 (89.02%), Query Frame = 0


Query: 1   MIGMGEEDQKRRCFNHRFGSFGTIGGISGRSSSKKLKPKPRKVPQRGLGVAQLERIRLEE 60
           MIGM EE+QK+RC+N+RFGSFGTIGGISGRSSSKKLKPKP+KVPQRGLGVAQLE+IRLEE
Sbjct: 1   MIGMAEEEQKQRCYNNRFGSFGTIGGISGRSSSKKLKPKPKKVPQRGLGVAQLEKIRLEE 60

Query: 61  QQKNGSGAAIFSSPSPLSPTKSSSYMSLPIPGFRQSNRSSSSSSSSFLSLPPVSLSSSTL 120
           QQKN + AAIFSS SPLSPTKSSSY+SLPIP F QSNRSSSSSS  F S PPV++SSS  
Sbjct: 61  QQKNDAAAAIFSSSSPLSPTKSSSYLSLPIPSFLQSNRSSSSSS--FPSPPPVNISSSAS 120

Query: 121 MFGPPLPVLNMAVKDSFTVPLVDQANSGGSETGLSAVSILEQGNALKWHSSCEYSLEKEN 180
           MFGPPLPVLNM VKDSFTVPLVDQANSGGSETGLSAV+ILEQGNALKW +SCEY LEKEN
Sbjct: 121 MFGPPLPVLNMPVKDSFTVPLVDQANSGGSETGLSAVTILEQGNALKWQNSCEYYLEKEN 180

Query: 181 CGFHPGQAFRSNFDFPYEVSPPWPSPELLQRAQQNHSPSPMVNVSSTTSQSSGLNTQIEP 240
            G  PG AFRSNFDFPY V+P  PS +LLQRAQ+N +PSPMVN+SSTTS SSGLN QIEP
Sbjct: 181 YGVDPGLAFRSNFDFPYGVNPGLPSTKLLQRAQENQTPSPMVNLSSTTSMSSGLNVQIEP 240

Query: 241 PSNQSYCYGNYSTIWADKEEKNHM 264
           PSNQSYCYGNYSTIW DKEEK  M
Sbjct: 241 PSNQSYCYGNYSTIWPDKEEKLQM 262

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g01970 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g01970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523897.1	1.73e-212	77.59	uncharacterized protein LOC111788000 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023523896.1	3.75e-212	77.22	uncharacterized protein LOC111788000 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6607903.1	6.47e-204	75.24	hypothetical protein SDJN03_01245, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022981261.1	5.62e-201	74.82	uncharacterized protein LOC111480450 isoform X2 [Cucurbita maxima]	[more]
XP_022981260.1	1.22e-200	74.47	uncharacterized protein LOC111480450 isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG02g01970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IW23	2.72e-201	74.82	uncharacterized protein LOC111480450 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IZ00	5.90e-201	74.47	uncharacterized protein LOC111480450 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FMW9	6.15e-200	74.17	uncharacterized protein LOC111446628 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FRP1	1.33e-199	73.82	uncharacterized protein LOC111446628 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5D3DWV3	3.76e-141	82.58	Actin cytoskeleton-regulatory complex protein pan1, putative isoform 1 OS=Cucumi...	[more]

BLAST of Cp4.1LG02g01970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..103
None	No IPR available	PANTHER	PTHR33388:SF1	OS01G0212500 PROTEIN	coord: 278..322 coord: 5..264
IPR040356	SPEAR family	PANTHER	PTHR33388	OS01G0212500 PROTEIN	coord: 278..322 coord: 5..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g01970.1	Cp4.1LG02g01970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity