Cp4.1LG02g01390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g01390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	organelle RRM domain-containing protein 2, mitochondrial-like
Location	Cp4.1LG02: 4715946 .. 4719017 (+)
RNA-Seq Expression	Cp4.1LG02g01390
Synteny	Cp4.1LG02g01390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGCAGACTGCAACGTGGGCTTTTTTACAAGTTTTTCTTAGTCTGTTCCTGAAAGGGTTTAGCAGCTTAAACCCACAAGGCCATGGCGCTCAGATCGGCTGCGGCGGTGGCTTCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCATCTCGTACTCTACCGATAATCTCGCAGGCAATTTGGGACTGGGAGAAACTGGAATCAAGCACGACTGCCTTCGTTTCTGGGCGGCTTTTCTCTAGCACTTCAATTTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCAGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTTGTTTCCGGTAACTCACTCTTTCTTAATCTAGATGTCTTTTGTTTATTTGTTTTAATAATCGTGTAGTTGTTTCTCGTAAATGTGTCGCGATTTGTACATCGACCATTTTTCTGGTAGTGAATTTGCGAATATTGTTGTGTTTAATGGTTCTATTCCTGCCGAATCATTTCTGTGTGGCTATGGTTTCGTTACGTATTGGAGTTTGTGGAATTTCAGTTTTCCTGTTGTTTCTTTTTCCTTCTCTTTAATTATTAATTTGTTCGATAGCTTTTTAGTTAGTGTTAACACATCTTTTTGAATTTTATACTTTTTTCTCCTCCCCGTTCTTGAGTTTGCTTCACCCCTGGGTTAGCAATTGTTGTGATGCATCCGTATATTTATCACGTTTTTAACATCGGAGAGTTAAGTCGTGGTAGAATATCAAGTGTTGTATGCTTAAGTCTATGCTTGATCACATGAGGGGCGTTGGCTTTCTCTACTTTGATCTCTTTTAATGATCGGTTCTTGGAGGTTGGAACTGAAATTTGGCTATGAATGTGTCTTTTTCATTTTACTGTTTGTTCCCCAGTAGAGGAATTATTCTGATTTTTAATCCAGATAATTGAATTATTGTTGTTGCTCTAAAAAAAAGTCCCTGTTTTTCATGTGACGTTGGTGTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACTACTGAAAAACTAAATGAAGCCTTCGCAAAGTTCGGAGAAGTTGTTCATGGTCTGTCCGTTCTCTTTGCTTATGTTTGATTTGGGCTTAGGCCTGAAGAATTTCCGTCTTTTACCTTTTGTCTTCCCTTCTGTTTACAGCAAGAGTCGTGACTGATCGAGTGACTGGATACTCTAAAGGATTCGGCTTTGTGAAATATGCTACTTTGGAGGATGCAGCCAAAGGCATAGAGGGTATGGATGGCAAGGTAAGTTGGCATCAATTCCCTCTTTTCTCATTCGAGACATGAAGCTTGTCTGTTGTGTAGTTTTATCCACATTTATACAAGATTACTGGATCTCTTACTCATGTTTTGTGACTGTGTTAGGAGAGAGGCCAAGGTTGTTGACTACTCTACGAACAGAAACCCTAATAAATGAGAGAGAAAATAAATTAGAATATGCTTTATTATGCTAATGGGGCTTACTACACAAATAAATACAAGATTCCTGAATATGGCTAAGTTAGCATTCTAGAGCATTTGATCAGCAGCATGGAAAACATATTACCTCGAACAATACTCAGCTATTGACTGTGATACCTGCTTTGAATCTTGAGTCTGATTATATCTGACTTGGTAGAAATTTCTCATTCTCATTTGCAATGGTGTTTGCTTGATGTAATTCTTTCAAACATAGTATTATTATGTGGAAACTCATAGATTTAGTTATAGAGCTTTTCTTCTACAATTAGAATCCGGAGTGATATTCATATCCTAGGTAAACCATAAGCTCAAAGCTGTGTGTGGTATAATTTCTCTTGGACTTAAGCCAACACATGGTGGTTTCATATTGATCAAATATTCGAAGGAGTATAACCTTGTTGCCAAAATTTGGATGGTATTTGACAATCCCTTGTGAAGGTCTTTCTCACCGTTAGTTTGATGGTACGCCCCTTTAGGGTGTGAAGCCTTTGTTGCGGATGCATGTTGCCTGGACTTTCTTTTGGGTTTTATGCAAGAAAAGAAACCAAAAGGTGCTCTTCGACAAAGAGCTCACCTTTGGTGGGTGTTTTGATTTTGTTATTTATCATTACTAGTATCATCAATTGTTAAAACCATTGCCAATATGTTGCTAAATTGTTAATGAGCCTTCGTTGGTCAAAAGGTCTTGAAAGAACAGACTTAACAATTAAACAATTAATTGATTTAGGTCTCTTTTAAATCCATTTTGTTCATTTTTGGAGTTCTACAATTGTAGGGGTGGGAGACTAAACCATTTACTTTGACATAACTTCCCTAGGTTTTCTTCACTATAATTTTTGACATTTTGGTAGAATAATTTTGTTATTGGCTGTTCGAATTAATTTGATTCCATGCAGTTTAAACATATACTCAGGTAAACTTTATAATGGGGAGACTGGTTTGATGCTTGCTTTTGAACACACGCTGTAATTTGTTTATCATGATTGAATGATGATGAAACTCCATTTATTTTACCTCTTAATGTTTTCCAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGCACCACTCTGCTCCTCAGCATAGCCAGCGACCATATTAATTTTTGCAAGGAAGAATGCTTGCCTATCCACTAAGCTCTCCTGGTCTGCAAAATGGCACGCAACATTTATACACGATTCAAGTTCTTTTTCTCAATGGAGGTTCGTTATTCTCTTCCATTGCTTAGAACCTTTTTGTACTACGGAACTGGAGATTAGCCGCAAGATTCAGAGTATATTTAAATTGAGAGAAGAAATTTTATACGTACCATGTATGACCCTATTTCTAAATACACTTAGTTAAAACTAATTTATATATAAATTCGCAAATAAACTTACTTTCCAGTGCATTTTTTGTCAAGTGAAATTGGATTGAATATAATTTTCTTTTGATATGCTGCGTAGAAGTGAAGATAAGCTTGATTCAAGCTTAATAAAGGGAATTATGTATGTAATCTCATAAAAGAAACTAGAAAGAAATACTAGATTTCTTCTTGCTTATGAAATGCTGAAAAGTTCTTCAT

mRNA sequence

CAAAGCAGACTGCAACGTGGGCTTTTTTACAAGTTTTTCTTAGTCTGTTCCTGAAAGGGTTTAGCAGCTTAAACCCACAAGGCCATGGCGCTCAGATCGGCTGCGGCGGTGGCTTCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCATCTCGTACTCTACCGATAATCTCGCAGGCAATTTGGGACTGGGAGAAACTGGAATCAAGCACGACTGCCTTCGTTTCTGGGCGGCTTTTCTCTAGCACTTCAATTTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCAGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTTGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTAAATGAAGCCTTCGCAAAGTTCGGAGAAGTTGTTCATGCAAGAGTCGTGACTGATCGAGTGACTGGATACTCTAAAGGATTCGGCTTTGTGAAATATGCTACTTTGGAGGATGCAGCCAAAGGCATAGAGGGTATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGCACCACTCTGCTCCTCAGCATAGCCAGCGACCATATTAATTTTTGCAAGGAAGAATGCTTGCCTATCCACTAAGCTCTCCTGGTCTGCAAAATGGCACGCAACATTTATACACGATTCAAGTTCTTTTTCTCAATGGAGGTTCGTTATTCTCTTCCATTGCTTAGAACCTTTTTGTACTACGGAACTGGAGATTAGCCGCAAGATTCAGAGTATATTTAAATTGAGAGAAGAAATTTTATACGTACCATGTATGACCCTATTTCTAAATACACTTAGTTAAAACTAATTTATATATAAATTCGCAAATAAACTTACTTTCCAGTGCATTTTTTGTCAAGTGAAATTGGATTGAATATAATTTTCTTTTGATATGCTGCGTAGAAGTGAAGATAAGCTTGATTCAAGCTTAATAAAGGGAATTATGTATGTAATCTCATAAAAGAAACTAGAAAGAAATACTAGATTTCTTCTTGCTTATGAAATGCTGAAAAGTTCTTCAT

Coding sequence (CDS)

ATGGCGCTCAGATCGGCTGCGGCGGTGGCTTCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCATCTCGTACTCTACCGATAATCTCGCAGGCAATTTGGGACTGGGAGAAACTGGAATCAAGCACGACTGCCTTCGTTTCTGGGCGGCTTTTCTCTAGCACTTCAATTTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCAGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTTGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTAAATGAAGCCTTCGCAAAGTTCGGAGAAGTTGTTCATGCAAGAGTCGTGACTGATCGAGTGACTGGATACTCTAAAGGATTCGGCTTTGTGAAATATGCTACTTTGGAGGATGCAGCCAAAGGCATAGAGGGTATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGCACCACTCTGCTCCTCAGCATAGCCAGCGACCATATTAA

Protein sequence

MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY

Homology

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BLAST of Cp4.1LG02g01390 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-37
Identity = 88/149 (59.06%), Postives = 104/149 (69.80%), Query Frame = 0


Query: 26  LPIISQAIWDWEKLESSTTAFVSGRLF-SSTSISSFIPPPLPPSAQQREKPEPSTNLFVS 85
           LP IS+A+      E ++      RLF S+ S  SF+ P        R + EPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKF 145
           GLSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKF
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 126

Query: 146 LDGWVIFAEYARPRPPPEHHSAPQHSQRP 174
           LDGWVIFAEYARPR   + +    +  RP
Sbjct: 127 LDGWVIFAEYARPREQSQSYQPQNNMSRP 150

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BLAST of Cp4.1LG02g01390 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 47  VSGRLFSS-TSISSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEV 106
           + G L SS  S  S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

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BLAST of Cp4.1LG02g01390 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 37/81 (45.68%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           ++ LF+ GLS  TT + L+EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 138 EGMDGKFLDGWVIFAEYARPR 159
              +G+ L+G  IF +YA+ +
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAK 113

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BLAST of Cp4.1LG02g01390 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 67  PSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q  +   S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

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BLAST of Cp4.1LG02g01390 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 33/93 (35.48%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 75  PEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAA 134
           P  +  LF++GLS  T+ + L  AF  FGE+V  +++ D+++  SKG+ F++Y T E A 
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337

Query: 135 KGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP 168
             ++ M+GK ++GW+I  + A+ +P  ++ S P
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTKPFRQNRSQP 370

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BLAST of Cp4.1LG02g01390 vs. NCBI nr
Match: XP_023521975.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338 bits (867), Expect = 6.33e-117
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60
           MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY 174

[Close]

BLAST of Cp4.1LG02g01390 vs. NCBI nr
Match: XP_022940520.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschata] >KAG6607832.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015229.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332 bits (851), Expect = 1.74e-114
Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60
           MALRSAAAVA RSLRRLITGTSSRTLPIISQAIWDWEKLESST AFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP HSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174

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BLAST of Cp4.1LG02g01390 vs. NCBI nr
Match: XP_022981627.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 328 bits (841), Expect = 5.84e-113
Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60
           MALRSAAAVASR LRRLI GTSSRTLPIISQAIWDWEKLESST AFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVASRCLRRLIIGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPS+NLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSSNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP HSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174

[Close]

BLAST of Cp4.1LG02g01390 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 290 bits (743), Expect = 4.73e-98
Identity = 151/169 (89.35%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60
           MALRSAAA A RSLRRLITGTS+RTLPIISQ I DWEKLE ST AF+SGRLFSS S SSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQH 169
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE++    H
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGFRPH 169

[Close]

BLAST of Cp4.1LG02g01390 vs. NCBI nr
Match: XP_022937407.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschata] >KAG7024884.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281 bits (719), Expect = 2.15e-94
Identity = 149/168 (88.69%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEK-LESSTTAFVSGRLFSSTSISS 60
           MALRSAAA A RSLRRLITGTS+RTLPI  QAI D EK    +T AFVSGRLFSS S SS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP 167
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEH++ P
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVP 168

[Close]

BLAST of Cp4.1LG02g01390 vs. ExPASy TrEMBL
Match: A0A6J1FQV3 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111446092 PE=4 SV=1)

HSP 1 Score: 332 bits (851), Expect = 8.44e-115
Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60
           MALRSAAAVA RSLRRLITGTSSRTLPIISQAIWDWEKLESST AFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP HSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174

[Close]

BLAST of Cp4.1LG02g01390 vs. ExPASy TrEMBL
Match: A0A6J1IUI1 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111480692 PE=4 SV=1)

HSP 1 Score: 328 bits (841), Expect = 2.83e-113
Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60
           MALRSAAAVASR LRRLI GTSSRTLPIISQAIWDWEKLESST AFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVASRCLRRLIIGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPS+NLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSSNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP HSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174

[Close]

BLAST of Cp4.1LG02g01390 vs. ExPASy TrEMBL
Match: A0A6J1FB41 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111443707 PE=4 SV=1)

HSP 1 Score: 281 bits (719), Expect = 1.04e-94
Identity = 149/168 (88.69%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEK-LESSTTAFVSGRLFSSTSISS 60
           MALRSAAA A RSLRRLITGTS+RTLPI  QAI D EK    +T AFVSGRLFSS S SS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP 167
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEH++ P
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVP 168

[Close]

BLAST of Cp4.1LG02g01390 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 278 bits (712), Expect = 1.21e-93
Identity = 145/167 (86.83%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60
           MALRSAAA A RSLRRLITGTS+RTLP+  QAI D EK   +T AFVSGRLFSS S SSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKL+E FAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP 167
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEH++ P
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVP 167

[Close]

BLAST of Cp4.1LG02g01390 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 276 bits (707), Expect = 7.51e-93
Identity = 145/165 (87.88%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60
           MALRSAAA A RSLR+LIT TS+RTLPIISQAI DWEK E ST  F+SGRLFSS S SSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKL+EAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHS 165
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE+++
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNN 165

[Close]

BLAST of Cp4.1LG02g01390 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-38
Identity = 88/149 (59.06%), Postives = 104/149 (69.80%), Query Frame = 0


Query: 26  LPIISQAIWDWEKLESSTTAFVSGRLF-SSTSISSFIPPPLPPSAQQREKPEPSTNLFVS 85
           LP IS+A+      E ++      RLF S+ S  SF+ P        R + EPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKF 145
           GLSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKF
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 126

Query: 146 LDGWVIFAEYARPRPPPEHHSAPQHSQRP 174
           LDGWVIFAEYARPR   + +    +  RP
Sbjct: 127 LDGWVIFAEYARPREQSQSYQPQNNMSRP 150

[Close]

BLAST of Cp4.1LG02g01390 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-25
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           S  LFVSGLS+ TT EKL +AFA FG++V ARV+TDR +G SKGFGFV YAT+EDA K  
Sbjct: 33  SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92

Query: 138 EGMDGKFLDGWVIFAEYARPRPP 161
             M+ KFLDGWVIF + ARPR P
Sbjct: 93  AEMNAKFLDGWVIFVDPARPREP 115

[Close]

BLAST of Cp4.1LG02g01390 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 47  VSGRLFSS-TSISSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEV 106
           + G L SS  S  S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of Cp4.1LG02g01390 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 9.6e-15
Identity = 37/81 (45.68%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           ++ LF+ GLS  TT + L+EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 138 EGMDGKFLDGWVIFAEYARPR 159
              +G+ L+G  IF +YA+ +
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAK 113

[Close]

BLAST of Cp4.1LG02g01390 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 67  PSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q  +   S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g01390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	3.9e-37	59.06	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	2.0e-17	46.02	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.4e-13	45.68	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FNR1	3.0e-13	42.39	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q8L440	1.5e-12	35.48	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Cp4.1LG02g01390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521975.1	6.33e-117	100.00	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita pepo su...	[more]
XP_022940520.1	1.74e-114	98.28	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschat...	[more]
XP_022981627.1	5.84e-113	97.13	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]	[more]
XP_038896843.1	4.73e-98	89.35	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_022937407.1	2.15e-94	88.69	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschat...	[more]

BLAST of Cp4.1LG02g01390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQV3	8.44e-115	98.28	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A6J1IUI1	2.83e-113	97.13	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1FB41	1.04e-94	88.69	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A6J1INZ4	1.21e-93	86.83	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A0A0LD10	7.51e-93	87.88	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV...	[more]

BLAST of Cp4.1LG02g01390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	2.8e-38	59.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	4.6e-25	66.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.4e-18	46.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	9.6e-15	45.68	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	2.1e-14	42.39	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 80..153 e-value: 1.1E-23 score: 94.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 81..147 e-value: 7.7E-20 score: 70.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 79..157 score: 18.393282
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 66..173 e-value: 6.1E-29 score: 102.9
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 50..169
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 50..169
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 59..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g01390.1	Cp4.1LG02g01390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding