Cp4.1LG01g26170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g26170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic
Location	Cp4.1LG01: 21311562 .. 21312388 (+)
RNA-Seq Expression	Cp4.1LG01g26170
Synteny	Cp4.1LG01g26170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTAGGCCTTCCCAATCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAACGCGTTGGGTCCAAGTTTGGCCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTACGTGAGCTTGGCTAGCTGGCTGCATATGCTTCGTTAATTTCGTTTTGAATTTGATTGATGTTGGTATCATGGTTTGTTCTGTGTATATATGCGCGCAGGTTCTTAGGAGTCGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAGCTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTCCTCCTCTTTAAGGAACCATATTATTGA

mRNA sequence

ATGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTAGGCCTTCCCAATCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAACGCGTTGGGTCCAAGTTTGGCCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTTCTTAGGAGTCGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAGCTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTCCTCCTCTTTAAGGAACCATATTATTGA

Coding sequence (CDS)

ATGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTAGGCCTTCCCAATCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAACGCGTTGGGTCCAAGTTTGGCCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTTCTTAGGAGTCGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAGCTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTCCTCCTCTTTAAGGAACCATATTATTGA

Protein sequence

MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY

Homology

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy Swiss-Prot
Match: Q9SMS0 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhT PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.2e-70
Identity = 138/217 (63.59%), Postives = 170/217 (78.34%), Query Frame = 0


Query: 26  RTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPRPSQSRRDQKEQNNNNNNNALG 85
           R   +YASQ P    +P PGVDTRIHW++ +EGWIGG      R D  +  + +  N L 
Sbjct: 39  RVTRIYASQGPTKPSKPSPGVDTRIHWESPDEGWIGG------RSDPAKSVDEDKTNLLS 98

Query: 86  -PSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKL 145
               A+L+ +S DSHYQFLGV  +ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KFMKL
Sbjct: 99  DEKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKL 158

Query: 146 KQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQSWKSTPDMVDRLAGR 205
           ++VY VLS+EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GR
Sbjct: 159 REVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGR 218

Query: 206 NMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 242
           NM+LSDQA TALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 219 NMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy Swiss-Prot
Match: Q75VW3 (Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) OX=608538 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-10
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 99  HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 158
           +YQ LGV  +A  EEIK AYRRL+KEYHPD ++   + AS+KF ++ + Y +LS+EE RK
Sbjct: 6   YYQILGVSKDATAEEIKKAYRRLAKEYHPDISA--DENASEKFKEINEAYHILSDEERRK 65

Query: 159 FYDWTLAQEEASRQADKLRIKLEDPYEQELQSWKSTP 196
            YD  L   +     D +   ++D  E   Q  + +P
Sbjct: 66  EYDRILKSGDEKSYRDFMEY-IQDFLESIWQGMRRSP 99

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy Swiss-Prot
Match: Q5N0G1 (Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 99  HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 158
           +YQ LGV  +AD +EIK AYRRL+++YHPD    P   A DKF ++ + YEVLS  E+R 
Sbjct: 5   YYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEP--GAEDKFKEINRAYEVLSEPETRA 64

Query: 159 FYD 162
            YD
Sbjct: 65  RYD 65

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy Swiss-Prot
Match: Q5KWZ8 (Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 99  HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 158
           +Y+ LGV   A  +EIK AYR+LSK+YHPD    P   A++KF ++K+ YEVLS++E R 
Sbjct: 6   YYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAP--DAAEKFKEIKEAYEVLSDDEKRA 65

Query: 159 FYD 162
            YD
Sbjct: 66  RYD 66

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy Swiss-Prot
Match: Q45552 (Chaperone protein DnaJ OS=Geobacillus stearothermophilus OX=1422 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 99  HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 158
           +Y+ LGV   A  EEIK AYR+LSK+YHPD    P   A++KF ++K+ YEVLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEP--DAAEKFKEIKEAYEVLSDDQKRA 65

Query: 159 FYD 162
            YD
Sbjct: 66  HYD 66

[Close]

BLAST of Cp4.1LG01g26170 vs. NCBI nr
Match: XP_023521950.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553300.1 NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 476 bits (1226), Expect = 1.95e-169
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60
           MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 1   MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60

Query: 61  GGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120
           GGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 61  GGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 181 EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 240
           EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 181 EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 240

[Close]

BLAST of Cp4.1LG01g26170 vs. NCBI nr
Match: XP_022963850.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita moschata])

HSP 1 Score: 468 bits (1204), Expect = 4.10e-166
Identity = 236/239 (98.74%), Postives = 237/239 (99.16%), Query Frame = 0


Query: 3   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 62
           MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG
Sbjct: 1   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 60

Query: 63  PRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 122
           P PSQSRRDQKEQNNNNNNNALGPSL DLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS
Sbjct: 61  PTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 120

Query: 123 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 182
           KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED
Sbjct: 121 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 180

Query: 183 PYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 241
           PYEQELQ+WKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY
Sbjct: 181 PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 239

[Close]

BLAST of Cp4.1LG01g26170 vs. NCBI nr
Match: KAG6602740.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 470 bits (1210), Expect = 1.99e-163
Identity = 237/241 (98.34%), Postives = 239/241 (99.17%), Query Frame = 0


Query: 1   MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60
           +AMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 233 LAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 292

Query: 61  GGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120
           GGP PSQSRRDQKEQNNNNNNNALGPSL DLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 293 GGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 352

Query: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 353 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 412

Query: 181 EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 240
           EDPYEQELQ+WKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 413 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 472

[Close]

BLAST of Cp4.1LG01g26170 vs. NCBI nr
Match: KAG7033427.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 470 bits (1210), Expect = 2.70e-163
Identity = 237/241 (98.34%), Postives = 239/241 (99.17%), Query Frame = 0


Query: 1   MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60
           +AMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 242 LAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 301

Query: 61  GGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120
           GGP PSQSRRDQKEQNNNNNNNALGPSL DLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 302 GGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 361

Query: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 362 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 421

Query: 181 EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 240
           EDPYEQELQ+WKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 422 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 481

[Close]

BLAST of Cp4.1LG01g26170 vs. NCBI nr
Match: XP_022990181.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita maxima])

HSP 1 Score: 453 bits (1166), Expect = 2.28e-160
Identity = 233/241 (96.68%), Postives = 234/241 (97.10%), Query Frame = 0


Query: 1   MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60
           MAMASP IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 1   MAMASP-IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60

Query: 61  GGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120
           GGP PSQSRRDQKEQNNN    ALGPS ADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 61  GGPTPSQSRRDQKEQNNN----ALGPSFADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 181 EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 240
           EDPYEQELQ+WKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 181 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 236

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy TrEMBL
Match: A0A6J1HJ56 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464036 PE=4 SV=1)

HSP 1 Score: 468 bits (1204), Expect = 1.98e-166
Identity = 236/239 (98.74%), Postives = 237/239 (99.16%), Query Frame = 0


Query: 3   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 62
           MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG
Sbjct: 1   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 60

Query: 63  PRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 122
           P PSQSRRDQKEQNNNNNNNALGPSL DLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS
Sbjct: 61  PTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 120

Query: 123 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 182
           KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED
Sbjct: 121 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 180

Query: 183 PYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 241
           PYEQELQ+WKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY
Sbjct: 181 PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 239

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy TrEMBL
Match: A0A6J1JM84 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487152 PE=4 SV=1)

HSP 1 Score: 453 bits (1166), Expect = 1.10e-160
Identity = 233/241 (96.68%), Postives = 234/241 (97.10%), Query Frame = 0


Query: 1   MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60
           MAMASP IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 1   MAMASP-IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60

Query: 61  GGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120
           GGP PSQSRRDQKEQNNN    ALGPS ADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 61  GGPTPSQSRRDQKEQNNN----ALGPSFADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 181 EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 240
           EDPYEQELQ+WKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 181 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 236

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy TrEMBL
Match: A0A5D3BJW7 (NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002250 PE=4 SV=1)

HSP 1 Score: 384 bits (987), Expect = 1.95e-133
Identity = 200/242 (82.64%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 3   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 62
           MAS   PNSL  ++TFHSPA  FRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 63  GPRPSQSRRDQKEQNNNNN--NNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYR 122
           G +        KE N+ NN  NN LGPSLADLLNNSSDSHYQFLGVGAEA++EEIKSAYR
Sbjct: 61  GKK--------KESNDQNNESNNMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYR 120

Query: 123 RLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIK 182
           RLSKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIK
Sbjct: 121 RLSKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIK 180

Query: 183 LEDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEP 241
           LEDPYEQELQ+W+STPDMVDRL GRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEP
Sbjct: 181 LEDPYEQELQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEP 234

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy TrEMBL
Match: A0A1S3CHS6 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501040 PE=4 SV=1)

HSP 1 Score: 384 bits (987), Expect = 1.95e-133
Identity = 200/242 (82.64%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 3   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 62
           MAS   PNSL  ++TFHSPA  FRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 63  GPRPSQSRRDQKEQNNNNN--NNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYR 122
           G +        KE N+ NN  NN LGPSLADLLNNSSDSHYQFLGVGAEA++EEIKSAYR
Sbjct: 61  GKK--------KESNDQNNESNNMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYR 120

Query: 123 RLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIK 182
           RLSKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIK
Sbjct: 121 RLSKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIK 180

Query: 183 LEDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEP 241
           LEDPYEQELQ+W+STPDMVDRL GRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEP
Sbjct: 181 LEDPYEQELQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEP 234

[Close]

BLAST of Cp4.1LG01g26170 vs. ExPASy TrEMBL
Match: A0A6J1DG49 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020201 PE=4 SV=1)

HSP 1 Score: 379 bits (973), Expect = 2.38e-131
Identity = 200/240 (83.33%), Postives = 215/240 (89.58%), Query Frame = 0


Query: 3   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPP-PGVDTRIHWQNDEEGWIG 62
           MASP IPNSLFL+R+ + PAR    W VYASQ PNNRQRP  PGVDTRIHWQN+EEGWIG
Sbjct: 1   MASPPIPNSLFLHRSSYVPARI---WRVYASQAPNNRQRPSLPGVDTRIHWQNEEEGWIG 60

Query: 63  GPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 122
           GP PSQS RDQ +Q       + GP+LA+LLNNSSDSHYQFLGV AEA+LEEIKSAYRRL
Sbjct: 61  GPMPSQSNRDQNKQE------SSGPNLAELLNNSSDSHYQFLGVNAEAELEEIKSAYRRL 120

Query: 123 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 182
           SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLE
Sbjct: 121 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLE 180

Query: 183 DPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 241
           DPYEQEL+++KSTPDMVDRLAGRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 181 DPYEQELENFKSTPDMVDRLAGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 231

[Close]

BLAST of Cp4.1LG01g26170 vs. TAIR 10
Match: AT4G09350.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.5e-71
Identity = 138/217 (63.59%), Postives = 170/217 (78.34%), Query Frame = 0


Query: 26  RTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPRPSQSRRDQKEQNNNNNNNALG 85
           R   +YASQ P    +P PGVDTRIHW++ +EGWIGG      R D  +  + +  N L 
Sbjct: 39  RVTRIYASQGPTKPSKPSPGVDTRIHWESPDEGWIGG------RSDPAKSVDEDKTNLLS 98

Query: 86  -PSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKL 145
               A+L+ +S DSHYQFLGV  +ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KFMKL
Sbjct: 99  DEKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKL 158

Query: 146 KQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQSWKSTPDMVDRLAGR 205
           ++VY VLS+EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GR
Sbjct: 159 REVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGR 218

Query: 206 NMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 242
           NM+LSDQA TALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 219 NMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of Cp4.1LG01g26170 vs. TAIR 10
Match: AT3G17830.1 (Molecular chaperone Hsp40/DnaJ family protein )

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 99  HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 158
           HY  L V   A L+EIKS+YR+L+++YHPD    P   A DKF ++   YEVLS+EE R 
Sbjct: 64  HYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNP--GAEDKFKQISAAYEVLSDEEKRS 123

Query: 159 FYD 162
            YD
Sbjct: 124 AYD 124

[Close]

BLAST of Cp4.1LG01g26170 vs. TAIR 10
Match: AT1G80030.1 (Molecular chaperone Hsp40/DnaJ family protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-10
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 95  SSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNE 154
           +S  +Y  LGV   A+ +EIK+AYRRL+++YHPD    P   A++KF ++   YEVLS+E
Sbjct: 72  TSGDYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEP--GATEKFKEISAAYEVLSDE 131

Query: 155 ESRKFYD 162
           + R  YD
Sbjct: 132 QKRALYD 136

[Close]

BLAST of Cp4.1LG01g26170 vs. TAIR 10
Match: AT1G80030.3 (Molecular chaperone Hsp40/DnaJ family protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-10
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 95  SSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNE 154
           +S  +Y  LGV   A+ +EIK+AYRRL+++YHPD    P   A++KF ++   YEVLS+E
Sbjct: 72  TSGDYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEP--GATEKFKEISAAYEVLSDE 131

Query: 155 ESRKFYD 162
           + R  YD
Sbjct: 132 QKRALYD 136

[Close]

BLAST of Cp4.1LG01g26170 vs. TAIR 10
Match: AT1G80030.2 (Molecular chaperone Hsp40/DnaJ family protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-10
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 95  SSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNE 154
           +S  +Y  LGV   A+ +EIK+AYRRL+++YHPD    P   A++KF ++   YEVLS+E
Sbjct: 72  TSGDYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEP--GATEKFKEISAAYEVLSDE 131

Query: 155 ESRKFYD 162
           + R  YD
Sbjct: 132 QKRALYD 136

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g26170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMS0	2.2e-70	63.59	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q75VW3	1.1e-10	41.24	Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12...	[more]
Q5N0G1	1.9e-10	52.38	Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG...	[more]
Q5KWZ8	2.5e-10	50.79	Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=...	[more]
Q45552	3.3e-10	50.79	Chaperone protein DnaJ OS=Geobacillus stearothermophilus OX=1422 GN=dnaJ PE=3 SV...	[more]

BLAST of Cp4.1LG01g26170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521950.1	1.95e-169	100.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022963850.1	4.10e-166	98.74	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita moschata]	[more]
KAG6602740.1	1.99e-163	98.34	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic, partial [Cucurbita argy...	[more]
KAG7033427.1	2.70e-163	98.34	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma ...	[more]
XP_022990181.1	2.28e-160	96.68	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita maxima]	[more]

BLAST of Cp4.1LG01g26170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ56	1.98e-166	98.74	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1JM84	1.10e-160	96.68	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A5D3BJW7	1.95e-133	82.64	NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CHS6	1.95e-133	82.64	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A6J1DG49	2.38e-131	83.33	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Momordica charantia O...	[more]

BLAST of Cp4.1LG01g26170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09350.1	1.5e-71	63.59	Chaperone DnaJ-domain superfamily protein	[more]
AT3G17830.1	6.8e-11	50.79	Molecular chaperone Hsp40/DnaJ family protein	[more]
AT1G80030.1	2.0e-10	46.27	Molecular chaperone Hsp40/DnaJ family protein	[more]
AT1G80030.3	2.0e-10	46.27	Molecular chaperone Hsp40/DnaJ family protein	[more]
AT1G80030.2	2.0e-10	46.27	Molecular chaperone Hsp40/DnaJ family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 134..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
IPR001623	DnaJ domain	PRINTS	PR00625	JDOMAIN	coord: 100..118 score: 48.1 coord: 136..156 score: 35.13 coord: 118..133 score: 43.45
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 97..156 e-value: 2.3E-18 score: 77.0
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 99..161 e-value: 1.2E-19 score: 70.1
IPR001623	DnaJ domain	PROSITE	PS50076	DNAJ_2	coord: 98..164 score: 18.029549
IPR001623	DnaJ domain	CDD	cd06257	DnaJ	coord: 99..153 e-value: 2.17164E-17 score: 71.8077
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 87..184 e-value: 1.1E-20 score: 75.7
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 40..160
IPR044618	NAD(P)H-quinone oxidoreductase subunit T-like	PANTHER	PTHR45283	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC	coord: 3..240
IPR018253	DnaJ domain, conserved site	PROSITE	PS00636	DNAJ_1	coord: 141..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g26170.1	Cp4.1LG01g26170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)