Cp4.1LG01g25900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g25900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 20977957 .. 20978274 (-)
RNA-Seq ExpressionCp4.1LG01g25900
SyntenyCp4.1LG01g25900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAAGGTGCAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCATGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

mRNA sequence

ATGGATTCAAGGTGCAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCATGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

Coding sequence (CDS)

ATGGATTCAAGGTGCAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCATGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

Protein sequence

MDSRCRSARPLVPHGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMASSNQRVVHEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS
Homology
BLAST of Cp4.1LG01g25900 vs. NCBI nr
Match: KAG6602687.1 (hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206 bits (523), Expect = 1.07e-66
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MDSRCRSARPLVPHGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMASSNQRVV 60
           MDSRCRSARPLVPHGEAMASSRNTKPT T LNASSCSCHVSFMVHHQERAKMASSNQRVV
Sbjct: 1   MDSRCRSARPLVPHGEAMASSRNTKPTATLLNASSCSCHVSFMVHHQERAKMASSNQRVV 60

Query: 61  HEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
           HEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEG IS
Sbjct: 61  HEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGSIS 105

BLAST of Cp4.1LG01g25900 vs. NCBI nr
Match: KAA0056544.1 (hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK02718.1 hypothetical protein E5676_scaffold1154G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 1.32e-34
Identity = 77/114 (67.54%), Postives = 84/114 (73.68%), Query Frame = 0

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       HGEAM  SR   PT +  NAS CS H+SF VHHQER  MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRKMAPTTS--NASLCSSHISFTVHHQERVMMAP 60

Query: 61  SNQRV-VHE-AMN-VHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
           SN+RV VH+ AMN VHEA  WN YGV VDEHIDRKAA+YISSVQERF+LEGLI+
Sbjct: 61  SNRRVLVHDQAMNNVHEATLWNLYGVGVDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of Cp4.1LG01g25900 vs. NCBI nr
Match: KAE8652260.1 (hypothetical protein Csa_022307 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 3.85e-32
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 14  HGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMASSNQRVVHE-AMN-VHEAKF 73
           HGEAM  SR+ K T T+ NAS CS H+SF VHHQERA MA SN RVVH+ AMN VHEA  
Sbjct: 134 HGEAMTGSRS-KITPTTSNASLCSSHISFTVHHQERALMAPSNHRVVHDQAMNNVHEATL 193

Query: 74  WNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
           WN YGV VDEHIDRKA++YISSVQERF+LEGLI+
Sbjct: 194 WNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 226

BLAST of Cp4.1LG01g25900 vs. NCBI nr
Match: KAG6578363.1 (hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (257), Expect = 3.06e-26
Identity = 71/115 (61.74%), Postives = 74/115 (64.35%), Query Frame = 0

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMAS 60
           MD+RCR AR LV       HGE MAS               CS HVSFMVH QERA M  
Sbjct: 1   MDARCR-ARGLVKGMLGPLHGEGMAS---------------CSSHVSFMVHRQERAAMPP 60

Query: 61  SNQRVVHE-AMN-VHEAKFWN--GYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
           SNQRVVH+ AMN V EA F N  G G   DEHIDRKAAMYISSVQERFRLEGLI+
Sbjct: 61  SNQRVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 99

BLAST of Cp4.1LG01g25900 vs. NCBI nr
Match: EXC33380.1 (hypothetical protein L484_010790 [Morus notabilis])

HSP 1 Score: 50.1 bits (118), Expect = 4.60e-05
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 0

Query: 6   RSARPLVPHGEA---MASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMASSNQRVVHE 65
           R+A+P    G +     SS+  KP   S +A S    V F+VH Q+  K   S   V+ +
Sbjct: 10  RAAKPSSTSGTSHVQYTSSKAMKPISQS-SAPSVPASVGFVVH-QDYVKPKVSF--VLPD 69

Query: 66  AMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
                  +F N YG+ VDE +D KAA YISSVQERF+LE + S
Sbjct: 70  NTRDLPVQFDNLYGISVDEGVDTKAATYISSVQERFKLERINS 108

BLAST of Cp4.1LG01g25900 vs. ExPASy TrEMBL
Match: A0A0A0LQT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 6.69e-37
Identity = 78/113 (69.03%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       HGEAM  SR+ K T T+ NAS CS H+SF VHHQERA MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRS-KITPTTSNASLCSSHISFTVHHQERALMAP 60

Query: 61  SNQRVVHE-AMN-VHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
           SN RVVH+ AMN VHEA  WN YGV VDEHIDRKA++YISSVQERF+LEGLI+
Sbjct: 61  SNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

BLAST of Cp4.1LG01g25900 vs. ExPASy TrEMBL
Match: A0A5A7UMY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00160 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 6.37e-35
Identity = 77/114 (67.54%), Postives = 84/114 (73.68%), Query Frame = 0

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       HGEAM  SR   PT +  NAS CS H+SF VHHQER  MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRKMAPTTS--NASLCSSHISFTVHHQERVMMAP 60

Query: 61  SNQRV-VHE-AMN-VHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
           SN+RV VH+ AMN VHEA  WN YGV VDEHIDRKAA+YISSVQERF+LEGLI+
Sbjct: 61  SNRRVLVHDQAMNNVHEATLWNLYGVGVDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of Cp4.1LG01g25900 vs. ExPASy TrEMBL
Match: W9SYV9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010790 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.23e-05
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 0

Query: 6   RSARPLVPHGEA---MASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMASSNQRVVHE 65
           R+A+P    G +     SS+  KP   S +A S    V F+VH Q+  K   S   V+ +
Sbjct: 10  RAAKPSSTSGTSHVQYTSSKAMKPISQS-SAPSVPASVGFVVH-QDYVKPKVSF--VLPD 69

Query: 66  AMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
                  +F N YG+ VDE +D KAA YISSVQERF+LE + S
Sbjct: 70  NTRDLPVQFDNLYGISVDEGVDTKAATYISSVQERFKLERINS 108

BLAST of Cp4.1LG01g25900 vs. ExPASy TrEMBL
Match: A0A059APA4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01634 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.95e-04
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 19  ASSRNTKPTGTSLNASSCSCHVSFMVHH----QERAKMASSNQRVVHEAMNVHEAKFWNG 78
           A+  ++K T T  + S+    V+F+VH     Q +A+M S    +V +      A+F   
Sbjct: 29  AAQYSSKVTPTQSSPSTAMTRVAFVVHQDKISQPKAQMVSV---IVPDKGRDSLAQFDKV 88

Query: 79  YGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
           +G+ VDE +D KA  YISSVQERF+LE + S
Sbjct: 89  FGMPVDESVDLKATNYISSVQERFKLEWVNS 116

BLAST of Cp4.1LG01g25900 vs. ExPASy TrEMBL
Match: A0A2P5FC89 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_089200 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.57e-04
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 73  NGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 105
           N YGV VDE +D KAA YISSVQERF+LE + S
Sbjct: 85  NLYGVAVDESVDSKAASYISSVQERFKLERVNS 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6602687.11.07e-6697.14hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0056544.11.32e-3467.54hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK0271... [more]
KAE8652260.13.85e-3272.34hypothetical protein Csa_022307 [Cucumis sativus][more]
KAG6578363.13.06e-2661.74hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sorori... [more]
EXC33380.14.60e-0540.78hypothetical protein L484_010790 [Morus notabilis][more]
Match NameE-valueIdentityDescription
A0A0A0LQT56.69e-3769.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1[more]
A0A5A7UMY16.37e-3567.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
W9SYV92.23e-0540.78Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010790 PE=4 SV=1[more]
A0A059APA41.95e-0438.46Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01634 PE=4 SV... [more]
A0A2P5FC895.57e-0469.70Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_089200 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR36030FAMILY NOT NAMEDcoord: 19..102
NoneNo IPR availablePANTHERPTHR36030:SF1SUBFAMILY NOT NAMEDcoord: 19..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25900.1Cp4.1LG01g25900.1mRNA