Cp4.1LG01g25630 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g25630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionActin-related protein 2/3 complex subunit 5
LocationCp4.1LG01: 20936164 .. 20945168 (+)
RNA-Seq ExpressionCp4.1LG01g25630
SyntenyCp4.1LG01g25630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCGGACACATTTTCCATTTCAGATTCTTACCTCCCAAGCTTCCTTTATTCATTTCGGGCTCGGGTTGGGTTAAAACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTTGCATGAAAGTTCTGCACTCTCTGCGCATTTGAATTCCAGAGCCGAAAGCTTCCGTACCCTCTGGCTTTCTGCGGCGCAAAATAGAATTCGTCAGAGCTATGTTTCACTCACACTGCACTCTTTCGAGGAAAGGCCCTTCAGGTGCCATTTGGGTCGCTGCTTACTTCTTCAAGAAGCTTAAGAAATCTCTGGTTATAGAGACTGATATTCCATCCTCTGTTGGTTCGCCTTCCTCTTTCTTCAAGTCTTTAAATTTTATTCCCATTTTTCGTATATGCATTTGGGATTTGGAGATAACGGGAATGTGTCCCATTATCGAGATGTTTACTGAAGTGATTCCACTGCGCCTGGTTTTGGGCTTATGGAGTTGCTTCATAGCGTTTAAATGATTATATTTCCTAACATATTGTGAATAGTTGTAGTTTTCTGTTGCCAATTTTTGAAAGTAGGACCCTGGAAACCTTCTCGTACTCGTAGTGCATTTGTGATTTTGATTCTTGTTGTTTGTTTATGAAATCCATTATCGTAAAAGAGTCCATTTAGTGAGGGAATTACCTGTTTGATTGAGTTTCTGAGACTTGATTTTATAATTGGTTTGGATTTCTGCTTTTACAGATCATCCGATTCACTAGGTTACCTTCTTCCTAGAAAAACCTAAAACGTAAATAGACGACCGGTTGGAATGTTCTTAGAATCTATTTCGTTTTTTTTTTGGTAATACTGTTCTTTTTTTTAAAAAGATTAGGAATTTATGCGTGAAAATAATTGCGGCTGTGTGCACTTTGTGGAGAAGAACGAGTAATGTCGTTTGAATATGAAAATGTCCAAAAGTGGACCGCCATGGACTTGGAGGTCTTATGTGTTGCTTTCCAGCTTGTTTTTTTTATAAAACTTTTTAAAATTTGTGAAAACAGTGATTAGATAGATGGCAATCCTTCAAAAGCTCGTAGAGTTTAATAGAAGAACAGCTTCTATTGATTTGGAAAAGAAAGCTTCCACAACAACAAAACATGGGGGAAACAACTTTTAGAAACAAATGTCAAATAATCTTGTGATTCCACTATCGAGAGGTTTAGTAGTCTAAGAACAGTCGAGTTGTCTGTAGAGCTTAGCTAGAACGAATGTGTGATTTCATAGTGATAGCAAAAGGAGTAATTGGATCTATCTATATGTATAGAACTCAGGGATAACCATATATGGAATACCTATCCCAAATGTGTGAATCCCACGTTGGTTGGGGAGGAGAATGAAACATCCTTTATAAGGGTGTTGAAACTTTTCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGACCGAAAGGGAAAGCCTAAAGCGGATAATATTTGCTAGCGGTGGGCTTGGGTCGTTACAGTTGGTATCAGAGTCAGACATTGGACTATGTGCCAACGAGGAGGCAGTTCCCCGAAAGGGGGTAGACATGAGACGGTGTGCCAGTAAGGACGCTGGGCTTTGAAAGGGGGTGGATTTGGTGGGGTCCCACATCAATTGGAGAAAGGAACAAGTGCTAGCGAGGACGCTAGGCCCCGAGGGGGTGGATTGTGAGAATCCCACATTGGTTGGAGAGGAGAACGAAACACCCTTTATAAGGGTATGGAAACCTTTCCTTAGCAGATGCGTTTTAAAGGCTTGAGGGGAAGCCCGAAAGGAAAAGCTCAGAGAGGACAATATCTGCTAGCGGTGGACTTGGGCCGTTACACCAAATGACTGTTAAGGGCTCTATTTGTAACTATCGTTTTCTACGCTCAGTTTCGATCACCATTGTTCCTCTATCCTGTTCATGTTTCCGTGTGTTTGTAAATTTTGCTAGACGAGTTAAATGTTGCTTACAGGTACAGTATAGTTTTCTAATTATTAATTGAAAGGGCTTATGCCCTTTCTACTGTGATTCATAATCTGTACTAATTTCTAGTTCATTCCCAGTTTTTTCTACAATCAGTTATGCTGCATGCTTCAAAATGATCTGCTTTTTGATACTTTCTTTTCAAACTGAAATTGCATATGCACACATTTCCTCTTCATTTACTTGCTGTTACTTCTATTTTGTATGGGCTCTGATCGCTCTTTCCTCTCTGTCCTGTATTTGTTGCCTGTTTGTAGATAAAATTTTGCAAGATGAAATGAACGCTGTGACATATAGAGTAATGGCCTACCTCCTCCTCGGCATTGCCCGGATATATTCCAAAAAAGTTGAATATCTGTATGTTGACTGCAATAAAGTGCTGACCGAAATCAATGAATTTGTGGTCACCACAAAGAATAGTGCTAGAAAGGAAAAGCAAACACCTTATTATGCTATTACTCTTCCTAAAAGATTTGAACTCGACTCGTTTGATCTGGGGATTATTGAGGACCTTACTGGGTAGGTTATCTAGTTTAGTTAATTTCTCTGTTTGGCTTATCTTATTTATCTTTTATTATAAATATTTCTAACTCGATGTTCCTTCGTTTTTTAGAAGCAACATGGTATGCCATGAAGAGATTACCCTCAAAGGTATGTGTTTATTTTACATTCTTCTGCTAATACTTCTTTTTTTCTAACAATCCTATTCTGCATGTCGTATAATTTATACAGATAGCATGTGGAAAAACGACATCACACTGTCAGTTGACGAGGTAAGTGTTTCATCATGTTTAGCGCTTAAACGAGTCAGACTAAATTAATTTGATTGAGCGTTTGTAAATAGTTGTTAAAGTCGATTTAAGAGTTCAGCTTAAGAAGTTCAAACTTTATCAACGTGTATAGAGTTGGAAATTTTATCTTACACTGTTGCAGAACCATGGCGAGGAATTCACTCCACTGCACAGTATTTGCTATTCTGATGATACCTTATTCAAAGAGTATGTAGGCCAAGCTCCACTGTTGCTTCCTTGACTTCAATATTCGATTTTCATTCTATGCAGGGTGATCATTTTTTTAATATTCTTATTGCTCCAGAGTCTTTTCGCCTCACCTCAAGGACAGTGAGATGCAGGCAAGCTCATTACATCACGATATTGTGTCAGAAAATTTTCAAGTGAGTGCATTCTCTGATGAAAATTATGAGATTGAGGTATTTGGAATTGAGAATACGCATATCAAAGCAATCGAACAATTTAATGAAGATCATCGATCTGATGAAGAAGAGATGAAGAAGGAGAAAATGCTGCAATATGAACATGTAGTTCCTGAAGCAAGCACTGAAATGGTTTTGACTGATAGATTTTCTCATGAAGAAACTGTAATTGTCAAGGAAGTTTCTATAACAGAGCATTTGAAATTATCTGAAGAAGATAATCAGAGTGTGGGAATTCGATCAGAAAATGAACTTGAGTTCATGAATGGAGGCGATAACATCAGCATCTTGGAAAGAAGCATGGAGAAACTTAGAGATAATTCTGCAACTCTTGTGGATAGCATGGATATCAACATGTCTTGGAGTGCACAAAATGAACCTACAAAACTTATTGGAACGGATAGTGAAGGGGATACTTTGAATTTTCTTGAAATGCAATCACCTGAAATGGAAGACCATGATGGAACTCGAAACAGTCTTCAACTATCTATTTCACTCGATGGAATGTTTGATTCCAAATTTCCAGATTTTACAGGTGGGTAAAATTTCTGAACCAACTTCCATCATTTAAATGATTTATCTACAATTTTGTGTAATTTTGACTACTTAAATCACGTGTTAATCTGTTTTTTTTCATGTAGGTACCAAGACACCTGAGTTTACAACAATTTCGACTCCAGCTAATAAGGAGAGACCGAGGACATCAAGGAAGAGAAAATGCATTGTTGATGATCCTATTGTTTTGTCGAACGAGTAAGTTCCCTCGTAGTTTTGTTTAGATCAGTTTTGTTGGTGAATTGTTATCTTCTTTCGACACACAAATGAGATAACATGTTGCTAAAACTGTATCAGAAAATTTAAGCGAAGCATATATGATGCCAGCAACTTGGTTTCAAAAAGAAGCAAATGTCCTCGTAGTGGTCTTGCTGTCTGGAAAGCTAGTCAAATTTCTACTCTCTCCTTTGGCTTCTCGGTGCCTTTGATGTCCTGTAAGTCTATGAGGCTCTTGACTGGGTTCTTTGAAAATCATATTTGATCTAAAAGCAAAAAAGTATTAAATTTTAATTTGTCCTCTGATGATGTTTTTCTACAGGTGTTTCGCCCGAGCTTAAGTCCCTTCTTTCTAAGACGTTAGTGAACATATCGGAATCTGCTGAATTGGTGAAATCTCATGAAAACTTGGATGATCCAAGTTCTCCAGCTTTTGACATGTTAGTGAAAATGGATAGCCCGGTCACAGTTTCCAAAACTGGAGAGCATTCAAATGAACCAGAGATTTCTGGATCTCCCACTACCTACAGATCTGAACAAACCACCATTTCTGTGGATAGAGCTTCAGTTTCTGAAGCTTCTGTCCTGGAACAGTTGTCTACATCAGAACCTCAAACTTCAGATAGACTGGAGCAAATAGCAATAGCACCAGGGACACCTGTTCGGTGCTCAACATCAGCTAGATTATTTGGGAGTCCAGATAGCCCTAAAGTTCCTAACTCAAAAGCAGTAAGGCTTGTTAAATTTTTGGGAAATGTATTCAATATATTTTGTTGATCCCAGTTTTCGTCGTTTGTTCAGCAGCTAAGGTTTTGTGAAGAGGATGCACTGGAACCGGGCAGCCCTGCGAGAACAAGGTAAGGTGGATCGGATTCGAGTTTGTGAACTGCTCTTACATTTCATTCCCACTTGGTGTTGACTTGTGAGAGCTGTGATGATGGTACAGAATGGTATGTGGGTGTCTTCTCCAAAATTTTAGAAATCAAAGGGTGCAAACCGTGGGAGAGGCTGCAAATTTGAGACAGCTTCTTAGCAGGAAAACGAGAAAAGAGAGTGCTAAAGTATTCTATGAGATATTGGTATGTTTGTTTGCTTGTTTGCTTGTTTGTTTGTTGTTAGCAAAAGTAAAGCATAATTGGGGTGTCTCATATACAAATATGGTGCGTAGTGCAGGTACTGAAAACCAAAAACTGCGTGGATGTGAGACAAGATTGTGCGTACGGTGACATCTTAGTATGGAAATTGGGAAACTGGGACACACAGGCCAGTTTTGATGTAGAGTAGAGTAGGTGATGAGTTTTAGGTGGTGTGGAAGGGGCGTGAGGCTAGTTTTGATGTACAGTAAGTTCCATAAGTTAGCAGCAGCAGCAGCCTGTGCTTGGTGTTGTAATAGATGATGATCTTTTGATGAATGGTTCATATCAGACAGAAGTGGAACCAAAGGCGTTTGGCTCGGATTCAGCACACTATTTGGACACTCTTTTGATCATCTTTTTGCTCGAAGAATAACATCTATTTTTACAACAACAACAATAATAATAATATTTTTATCATTACGCTCCCATGTAATTTTAATTTTATTATATATTTATATCTAAAAAATTAAGAATTTTCTCCAAAATAAATATTTGCCGGCTGCCGCAGCTGCACCCACGCACCAACTGTCTTCTTTCGTTTCTCATTATCTTCGTTTCTGCTGCTGCCGTTGCTAGTCGCCGGTCGTCGGTACGCCCCCACCGCCACGTTTTTCTTCTTCTCTTCTTATATCCTTCCCTGCCGCAACCTCACGCCACCATGGGTCAGTTTTCTATCGCAGCCTCTCCATCTTTCGATTTTTGCCATCGAAGTCTGTCCGGAAGCTTTTTTTTCTTTTTTTTTTTCATAAGAATTCCGCATATTTTCATATTTAGGATTTNTCAAAATAGGGTAAAATTGAGATTAGGCCAATTTTAGTTTAAAATCCTGCCAAACCCGACTTATTTTGGATGGAAAACTTTTGGATCAAAGCAAGATCTCATATCATTTTGGATTTCAAATTCTATTTTTTCTATTCATACCAAACAGAAGTGCCTTCTAAATCCAGGGTTTCCTAACAAAGGCTAAGTTCGAGGAAATTCTACTGGAGGTTGGGTGATAGGCGAAAATGTCAGATGCATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTAATGATCTCTATATCTGCTCTTTGATTTCTAAGATTTAAATATGTTTAGCTCCTCCTAACTTCCATTTTTAATAATTGAAAATGCCTCGATTAGCAATTTGTTTGCTCGTTCAGGTCTAAAACAGTCGAAGCTCTAAAAACTGCCCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGGTATCCTTTCTTTCATTTATGATCTCTTGCATGCTTCGTTATTGTTTTTCTACATCGTGTTCTTTTTTCCTTGCAAGATCTAATAAGTTTTTGTGTTCATTATTATTAAATTTGTGGGTGATCTTTAGAAGTCTATAGGCAATTACGGTAGGTTCTCTGCTATTGGATGATAGTCATTTTCAATTATCGTGATCTTTTTGAATGCTTTTCCTGTATTATCTCGATGATGGGGTCAATTAGAACTTGCTGGTAGTTGATATATTTTTCGGAAGTAGTCTGCTCCATTTGCTTGCAGCTGCTCAAAATGGATGGACGTGTTATATTTTACGTTTACGTGTTGTCGGTCTGCCTGAATTGGGCGAGAATTGAATAAATCTGATGTGATTTTTTGGACTTCTGCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTGAGTTCTTATGGTATTTAACTGCTAAGATGTCTATATTCCTATTGCTTCGATTATCTTTATGCGTATGAAGCTGGTTATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTCATGTTGATAAAAAATGATATGTCCACGTTGATAGGGATTGTGTTAGTCCCTAGTGCTTGGATGATTGGATGGCTGATCTTCATAACCGTTTAGCTAGAAATACCTCGTCACACCTTCTTAAGTTAGAAGGTCACAACCAGCCTTTCTCTCAATACACAGCAGCACTTGATTCCACTGATGTCTGCCCCTTATTTGTCTCCCACATTAAGTTCTGAAGTTTTACAGAATTTTGCTAATCTTTTGTTAAGGGCATGTTTGGAGTAACTTTCGAAGTGAAGTCATCCTAAACACCAGTAAGAAATAAGTATGGGCCCTTGCCAACCCTGATTGCACTACAAAGTTAAAATTATACAGTCCCGGTCGGGTTTCTTGAGATTATTTTGGGGTTAAAATTCCAGCATGAGGGCATAGAATTTTGGGGAGTGATACAAACCAAATAACTATATCGATATTATGTAGAATGAAGAAATGAAAAAGGGCTAGTGTTTTAGGAACTTTGAACCTTCTTCTTGAGTTCTTTTTTTTTTCAAGCTTAAACCAACTAAACTATTACCTACTTCAATCTCCTTCCCCTCCTAAAAAACCTCCTAGCTAATGACTATTATACCTTTACCAACCTAATGATATTTCTGGTTTCTTCTACCCAATATCTTTGCAAGAAAGCGCCTATGAACTATCTTCTATTTCGTTGTATTCTCTTTTTCTGACCCATAATAGGTAACTTTTATTGGTCTTTCAGGCTGTTTTCTTGTTTCTTGAACTTGAGCATTGATTGACATAGATATACTAGTACTTACAGGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGATTTTCCTTAACTTGATAGAACATTGCGAGCCCTCACCCTTTGGCCGATGTCAAAAATCATATTATTTTCTCTCAGTGTATGTGAAATTGCTTTTCAGAGAATGTTTGTGTTAAGCTGAGTAGACGTCTATAGCTGTCAGCTGTCACATTATATTAGAAAAAAACAGGTACTGAATTTCATTGAGTTCAGGATACTTTGAATTGCATTATTTTGAAGAACGTGTGAGTATTGTTATTTGTTTGGCTAGATTGGAAGGGACCAAAATATATACGGCTTATTTCTTTGTTCAGGATTACACAACTTGTAGGAATTACTTTCCGACTTTAAGAAATATGATTCCCATTCAATATAAACCTTTGTCAATAACTCAACTTGTTTTCATTTTACTATTGAACATGATTTAAGATCTAAGAAAGTATTGAGTAACTCTATAGTATTGAATGGGAGTCATATCAACACACAACTTATTATTATTATTAGTTCAAGAATATTCAATATTTTGAAACAACATACACCATCTTTTGAAAACTAATTAATAAAATAAAGTTGTTGAACTAAAAAAACTCGAAACGCATCCTTTACTGGCGCTCCATGAATCAGTGAGCAATGGTTTTGGCTTTCCAAGGACCTTCAGCTGTAGCAGAGGAGGTGCTGCCTGGTTTGGTGTTGAGAGGTGGCGGTTCTCACGTTTTGGCTGTCCAAAATATTGATGAAATGCATTGAGATATATGGGTAAGAAATCCTCAAATTTACAATTATCATACCTGCTGCTTGTCATCTGCAAAGAAAAGCCGAGTACAGTAGAGAATAGGCCGAGTGTTGTACCACCTTGTCGGGTTCACGATAAGACTCAAGATGCCTCCCTCCCCCCTCCACAGTTCTACACTTTTGACCATCCCACAGTTTCTCGAGAGTAGACCACTGGTTCGGCGTTTATAATCAAACTTTGAAATAAAGGCATATGCTTTGAAGTAATAATCAAAGGAAAGAGTCATGAATCAGCAGTATGAGATGATCTTCATGTATGTTACAACATTCTCCCAAATGCCTC

mRNA sequence

TCCGGACACATTTTCCATTTCAGATTCTTACCTCCCAAGCTTCCTTTATTCATTTCGGGCTCGGGTTGGGTTAAAACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTTGCATGAAAGTTCTGCACTCTCTGCGCATTTGAATTCCAGAGCCGAAAGCTTCCGTACCCTCTGGCTTTCTGCGGCGCAAAATAGAATTCGTCAGAGCTATGTTTCACTCACACTGCACTCTTTCGAGGAAAGGCCCTTCAGGTGCCATTTGGGTCGCTGCTTACTTCTTCAAGAAGCTTAAGAAATCTCTGGTTATAGAGACTGATATTCCATCCTCTGTTGATAAAATTTTGCAAGATGAAATGAACGCTGTGACATATAGAGTAATGGCCTACCTCCTCCTCGGCATTGCCCGGATATATTCCAAAAAAGTTGAATATCTGTATGTTGACTGCAATAAAGTGCTGACCGAAATCAATGAATTTGTGGTCACCACAAAGAATAGTGCTAGAAAGGAAAAGCAAACACCTTATTATGCTATTACTCTTCCTAAAAGATTTGAACTCGACTCGTTTGATCTGGGGATTATTGAGGACCTTACTGGAAGCAACATGGTATGCCATGAAGAGATTACCCTCAAAGATAGCATGTGGAAAAACGACATCACACTGTCAGTTGACGAGAACCATGGCGAGGAATTCACTCCACTGCACAGTATTTGCTATTCTGATGATACCTTATTCAAAGAAGTCTTTTCGCCTCACCTCAAGGACAGTGAGATGCAGGCAAGCTCATTACATCACGATATTGTGTCAGAAAATTTTCAAGTGAGTGCATTCTCTGATGAAAATTATGAGATTGAGGTATTTGGAATTGAGAATACGCATATCAAAGCAATCGAACAATTTAATGAAGATCATCGATCTGATGAAGAAGAGATGAAGAAGGAGAAAATGCTGCAATATGAACATGTAGTTCCTGAAGCAAGCACTGAAATGGTTTTGACTGATAGATTTTCTCATGAAGAAACTGTAATTGTCAAGGAAGTTTCTATAACAGAGCATTTGAAATTATCTGAAGAAGATAATCAGAGTGTGGGAATTCGATCAGAAAATGAACTTGAGTTCATGAATGGAGGCGATAACATCAGCATCTTGGAAAGAAGCATGGAGAAACTTAGAGATAATTCTGCAACTCTTGTGGATAGCATGGATATCAACATGTCTTGGAGTGCACAAAATGAACCTACAAAACTTATTGGAACGGATAGTGAAGGGGATACTTTGAATTTTCTTGAAATGCAATCACCTGAAATGGAAGACCATGATGGAACTCGAAACAGTCTTCAACTATCTATTTCACTCGATGGAATGTTTGATTCCAAATTTCCAGATTTTACAGGTACCAAGACACCTGAGTTTACAACAATTTCGACTCCAGCTAATAAGGAGAGACCGAGGACATCAAGGAAGAGAAAATGCATTGTTGATGATCCTATTGTTTTGTCGAACGAAAAATTTAAGCGAAGCATATATGATGCCAGCAACTTGGTTTCAAAAAGAAGCAAATGTCCTCGTAGTGGTCTTGCTGTCTGGAAAGCTAGTCAAATTTCTACTCTCTCCTTTGGCTTCTCGGTGCCTTTGATGTCCTGTGTTTCGCCCGAGCTTAAGTCCCTTCTTTCTAAGACGTTAGTGAACATATCGGAATCTGCTGAATTGGTGAAATCTCATGAAAACTTGGATGATCCAAGTTCTCCAGCTTTTGACATGTTAGTGAAAATGGATAGCCCGGTCACAGTTTCCAAAACTGGAGAGCATTCAAATGAACCAGAGATTTCTGGATCTCCCACTACCTACAGATCTGAACAAACCACCATTTCTGTGGATAGAGCTTCAGTTTCTGAAGCTTCTGTCCTGGAACAGTTGTCTACATCAGAACCTCAAACTTCAGATAGACTGGAGCAAATAGCAATAGCACCAGGGACACCTGTTCGGTGCTCAACATCAGCTAGATTATTTGGGAGTCCAGATAGCCCTAAAGTTCCTAACTCAAAAGCAGTAAGGCTTGTTAAATTTTTGGGAAATGTATTCAATATATTTTGTTGATCCCAGTTTTCGTCGTTTGTTCAGCAGCTAAGGTTTTGTGAAGAGGATGCACTGGAACCGGGCAGCCCTGCGAGAACAAGAATGGTATGTGGGTGTCTTCTCCAAAATTTTAGAAATCAAAGGGTGCAAACCGTGGGAGAGGCTGCAAATTTGAGACAGCTTCTTAGCAGGAAAACGAGAAAAGAGAGTGCTAAAGTATTCTATGAGATATTGGTACTGAAAACCAAAAACTGCGTGGATGTGAGACAAGATTGTGCGTACGGTGACATCTTAGTATGGAAATTGGGAAACTGGGACACACAGGCCAGTTTTGATGTAGAGTAGAGTAGGTGATGAGTTTTAGGTGGTGTGGAAGGGGCGTGAGGCTAGTTTTGATGTACAGTAAGTTCCATAAGTTAGCAGCAGCAGCAGCCTGTGCTTGGTGTTGTAATAGATGATGATCTTTTGATGAATGGTTCATATCAGACAGAAGTGGAACCAAAGGCGTTTGGCTCGGATTCAGCACACTATTTGGACACTCTTTTGATCATCTTTTTGCTCGAAGAATAACATCTATTTTTACAACAACAACAATAATAATAATATTTTTATCATTACGCTCCCATGTAATTTTAATTTTATTATATATTTATATCTAAAAAATTAAGAATTTTCTCCAAAATAAATATTTGCCGGCTGCCGCAGCTGCACCCACGCACCAACTGTCTTCTTTCGTTTCTCATTATCTTCGTTTCTGCTGCTGCCGTTGCTAGTCGCCGGTCGTCGGTACGCCCCCACCGCCACGTTTTTCTTCTTCTCTTCTTATATCCTTCCCTGCCGCAACCTCACGCCACCATGGGGTTTCCTAACAAAGGCTAAGTTCGAGGAAATTCTACTGGAGGTTGGGTGATAGGCGAAAATGTCAGATGCATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAAAACAGTCGAAGCTCTAAAAACTGCCCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGATTTTCCTTAACTTGATAGAACATTGCGAGCCCTCACCCTTTGGCCGATGTCAAAAATCATATTATTTTCTCTCAGTGTATGTGAAATTGCTTTTCAGAGAATGTTTGTGTTAAGCTGAGTAGACGTCTATAGCTGTCAGCTGTCACATTATATTAGAAAAAAACAGGTACTGAATTTCATTGAGTTCAGGATACTTTGAATTGCATTATTTTGAAGAACGTGTGAGTATTGTTATTTGTTTGGCTAGATTGGAAGGGACCAAAATATATACGGCTTATTTCTTTGTTCAGGATTACACAACTTGTAGGAATTACTTTCCGACTTTAAGAAATATGATTCCCATTCAATATAAACCTTTGTCAATAACTCAACTTGTTTTCATTTTACTATTGAACATGATTTAAGATCTAAGAAAGTATTGAGTAACTCTATAGTATTGAATGGGAGTCATATCAACACACAACTTATTATTATTATTAGTTCAAGAATATTCAATATTTTGAAACAACATACACCATCTTTTGAAAACTAATTAATAAAATAAAGTTGTTGAACTAAAAAAACTCGAAACGCATCCTTTACTGGCGCTCCATGAATCAGTGAGCAATGGTTTTGGCTTTCCAAGGACCTTCAGCTGTAGCAGAGGAGGTGCTGCCTGGTTTGGTGTTGAGAGGTGGCGGTTCTCACGTTTTGGCTGTCCAAAATATTGATGAAATGCATTGAGATATATGGGTAAGAAATCCTCAAATTTACAATTATCATACCTGCTGCTTGTCATCTGCAAAGAAAAGCCGAGTACAGTAGAGAATAGGCCGAGTGTTGTACCACCTTGTCGGGTTCACGATAAGACTCAAGATGCCTCCCTCCCCCCTCCACAGTTCTACACTTTTGACCATCCCACAGTTTCTCGAGAGTAGACCACTGGTTCGGCGTTTATAATCAAACTTTGAAATAAAGGCATATGCTTTGAAGTAATAATCAAAGGAAAGAGTCATGAATCAGCAGTATGAGATGATCTTCATGTATGTTACAACATTCTCCCAAATGCCTC

Coding sequence (CDS)

ATGTCAGATGCATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAAAACAGTCGAAGCTCTAAAAACTGCCCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGA

Protein sequence

MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRALADTINTV
Homology
[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy Swiss-Prot
Match: Q9M117 (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 234.2 bits (596), Expect = 8.6e-61
Identity = 115/129 (89.15%), Postives = 120/129 (93.02%), Query Frame = 0 

Query: 5   FVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FVEADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVHR
Sbjct: 4   FVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVHR 63

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           ALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTE+AGLGCILR
Sbjct: 64  ALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILR 123

Query: 125 ALADTINTV 134
            L DTINTV
Sbjct: 124 CLTDTINTV 132

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy Swiss-Prot
Match: B3H6Y2 (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-55
Identity = 105/130 (80.77%), Postives = 115/130 (88.46%), Query Frame = 0 

Query: 4   AFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVH 63
           AFVEADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSANWIVVH
Sbjct: 6   AFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSANWIVVH 65

Query: 64  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCIL 123
           RA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTE+AGLGCIL
Sbjct: 66  RAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAGLGCIL 125

Query: 124 RALADTINTV 134
           R L+DT NTV
Sbjct: 126 RCLSDTTNTV 135

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy Swiss-Prot
Match: Q6DE18 (Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5-b PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.1e-10
Identity = 33/105 (31.43%), Postives = 60/105 (57.14%), Query Frame = 0 

Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++SL++Q + + A ++AL  SP N++++  K     +V + L + K  +++   ++LDP
Sbjct: 42  EVDSLIRQGELLRAFQSALRNSPVNSKNQVAKERTQAIVLKVLTSFKSNEIEKAVNTLDP 101

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G       +    L+ HEK     GLG I+R L
Sbjct: 102 NGIDLLMKYIYKGFEKPTENSSAILLQWHEKAFVIGGLGSIVRVL 146

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy Swiss-Prot
Match: O15511 (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy Swiss-Prot
Match: Q5R516 (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of Cp4.1LG01g25630 vs. NCBI nr
Match: XP_022989961.1 (actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita maxima] >XP_023544147.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita pepo subsp. pepo] >XP_023544156.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266 bits (679), Expect = 1.35e-89
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 133
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]
BLAST of Cp4.1LG01g25630 vs. NCBI nr
Match: XP_022922896.1 (actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata] >XP_022922905.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata] >KAG6602679.1 Actin-related protein 2/3 complex subunit 5A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033365.1 Actin-related protein 2/3 complex subunit 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263 bits (672), Expect = 1.58e-88
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 133
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]
BLAST of Cp4.1LG01g25630 vs. NCBI nr
Match: XP_022989957.1 (actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989958.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989959.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989960.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_023544102.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544112.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544120.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544130.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544139.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259 bits (662), Expect = 5.86e-87
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 133
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]
BLAST of Cp4.1LG01g25630 vs. NCBI nr
Match: XP_010089302.1 (actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 258 bits (658), Expect = 2.31e-86
Identity = 127/132 (96.21%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 2   SDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIV 61
           +DAFVEADNAEAIITRIEHKSRKIESLLKQSK VEALKTALEGSPPNTRDERCKSANWIV
Sbjct: 4   TDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIV 63

Query: 62  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGC 121
           VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AGLGC
Sbjct: 64  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC 123

Query: 122 ILRALADTINTV 133
           ILR+LADT+NTV
Sbjct: 124 ILRSLADTVNTV 135

[Close]
BLAST of Cp4.1LG01g25630 vs. NCBI nr
Match: XP_022922855.1 (actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922865.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922874.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922881.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922889.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata])

HSP 1 Score: 256 bits (655), Expect = 6.85e-86
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 133
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy TrEMBL
Match: A0A6J1JLM3 (Actin-related protein 2/3 complex subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC111486990 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 6.55e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 133
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy TrEMBL
Match: A0A6J1E5D8 (Actin-related protein 2/3 complex subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111430708 PE=3 SV=1)

HSP 1 Score: 263 bits (672), Expect = 7.66e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 133
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy TrEMBL
Match: A0A6J1JH92 (Actin-related protein 2/3 complex subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC111486990 PE=3 SV=1)

HSP 1 Score: 259 bits (662), Expect = 2.84e-87
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 133
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy TrEMBL
Match: W9R3V7 (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 258 bits (658), Expect = 1.12e-86
Identity = 127/132 (96.21%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 2   SDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIV 61
           +DAFVEADNAEAIITRIEHKSRKIESLLKQSK VEALKTALEGSPPNTRDERCKSANWIV
Sbjct: 4   TDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIV 63

Query: 62  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGC 121
           VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AGLGC
Sbjct: 64  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC 123

Query: 122 ILRALADTINTV 133
           ILR+LADT+NTV
Sbjct: 124 ILRSLADTVNTV 135

[Close]
BLAST of Cp4.1LG01g25630 vs. ExPASy TrEMBL
Match: A0A6J1E4Q3 (Actin-related protein 2/3 complex subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111430708 PE=3 SV=1)

HSP 1 Score: 256 bits (655), Expect = 3.32e-86
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 133
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]
BLAST of Cp4.1LG01g25630 vs. TAIR 10
Match: AT4G01710.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 234.2 bits (596), Expect = 6.1e-62
Identity = 115/129 (89.15%), Postives = 120/129 (93.02%), Query Frame = 0 

Query: 5   FVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FVEADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVHR
Sbjct: 4   FVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVHR 63

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           ALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTE+AGLGCILR
Sbjct: 64  ALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILR 123

Query: 125 ALADTINTV 134
            L DTINTV
Sbjct: 124 CLTDTINTV 132

[Close]
BLAST of Cp4.1LG01g25630 vs. TAIR 10
Match: AT5G65274.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 215.7 bits (548), Expect = 2.3e-56
Identity = 105/130 (80.77%), Postives = 115/130 (88.46%), Query Frame = 0 

Query: 4   AFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVH 63
           AFVEADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSANWIVVH
Sbjct: 6   AFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSANWIVVH 65

Query: 64  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCIL 123
           RA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTE+AGLGCIL
Sbjct: 66  RAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAGLGCIL 125

Query: 124 RALADTINTV 134
           R L+DT NTV
Sbjct: 126 RCLSDTTNTV 135

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g25630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1178.6e-6189.15Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=... [more]
B3H6Y23.2e-5580.77Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q6DE189.1e-1031.43Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5... [more]
O155111.5e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=... [more]
Q5R5161.5e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=... [more]
BLAST of Cp4.1LG01g25630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022989961.11.35e-89100.00actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita maxima] >XP_0... [more]
XP_022922896.11.58e-8899.25actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata] >XP... [more]
XP_022989957.15.86e-8797.06actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_0... [more]
XP_010089302.12.31e-8696.21actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin... [more]
XP_022922855.16.85e-8696.32actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP... [more]
BLAST of Cp4.1LG01g25630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JLM36.55e-90100.00Actin-related protein 2/3 complex subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1E5D87.66e-8999.25Actin-related protein 2/3 complex subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1JH922.84e-8797.06Actin-related protein 2/3 complex subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
W9R3V71.12e-8696.21Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484... [more]
A0A6J1E4Q33.32e-8696.32Actin-related protein 2/3 complex subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
BLAST of Cp4.1LG01g25630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G01710.16.1e-6289.15ARP2/3 complex 16 kDa subunit (p16-Arc) [more]
AT5G65274.12.3e-5680.77ARP2/3 complex 16 kDa subunit (p16-Arc) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006789Actin-related protein 2/3 complex subunit 5PFAMPF04699P16-Arccoord: 10..129
e-value: 2.3E-23
score: 83.3
IPR006789Actin-related protein 2/3 complex subunit 5PANTHERPTHR12644ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARCcoord: 3..131
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilyGENE3D1.25.40.190coord: 15..130
e-value: 1.5E-31
score: 111.0
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilySUPERFAMILY69103Arp2/3 complex 16 kDa subunit ARPC5coord: 5..129
NoneNo IPR availablePANTHERPTHR12644:SF0ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5coord: 3..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25630.1Cp4.1LG01g25630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015629 actin cytoskeleton
molecular_function GO:0051015 actin filament binding