Cp4.1LG01g25160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g25160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionchlorophyll(Ide) b reductase NOL, chloroplastic
LocationCp4.1LG01: 18481183 .. 18486327 (-)
RNA-Seq ExpressionCp4.1LG01g25160
SyntenyCp4.1LG01g25160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCGTTCTCCTTCATCTCGCGTAACGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGAGTTACAGTCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGTGAAGGCTGAAATCTTTCAGCAGAGAGGGCCTATGATTCCTCCTTAGAATGTTTTGATCGCTGGTTCTACTAAAGGTGTGGCGTCCTTTTGTTCATTTTGTTTGTTTGATATATTGCGTTATGCTTTGGTTTCCTGTTGCATCTATTAATTTCCTGCTGGTTTTTTGTTTATAGTTTTGCTTGAACTTATGGCGTCTGGTGTTTGACGTCGTTTTTGTAAGCAAGAAATTCCGAACTGTACTCGCTCAACTGTATTTTTGCTTTTTTGACGAAATTTTGGGTGGTGGAATACATATTTGTTTATCTGATTGACTTGAATTCTTTTTAGGAATTTGGTTTGAGGAACTTCCTGGCTGGCTCTTTCCTCTTAGTTTTATTAAGAATTTGAAGGTATGTTTTAGACTATGATTTCACGTGTACAGTTGCAGTTTGGATTAGTAAGCTTTAAGGTTCACGAGCTTATATCATACGATTGAAGTCAAACTTATTGTTTGGAACGATTGTCGAATGTTTTATTTGTTTGGACTTCGTAGAAAGATGGATACATTGGAGGTTAGAGCCTAATCAATTAAAGTTTGAGTGCTTAAATGAGTGCTAAGATATCCTCCGGATTAATATCCTTCTAATTATCAAGTTAGTCATAAACTTCATAAATTAGGCCTTTGGACATATAATTTTTCAAACTGTTTTGCTACGAGGACCAAAGAACAACCGGTTATTCTTAGGATTTTCATCTAAATCCAAGGAAAATGTTTACTATGTATTTGCACACAGTTACCTGAATTTTCTTGATCGTGTAGATTTAGTCATATTCTAATCACTTACAGATCCTTGGGATGGGAGTTTTTCATTTGAGTGCGGATATAGAGTACTTCTTTGACACATCAGTGCATTTAACTTCCTTATGTTCGTTCGTATGGTGCTTTCTACTCATATTTGCAATGTATTCAGGAATAGGATATGCGGTTGCCAAACAGTTTCTGAAAGCAGGTGACAATGTTGTAATCTGTTCACTATCAGGTAACATATGCACTATGCTCATCATGAAACCTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATTCATGAACACTCGTGTAGGACTCTGAATAAATCTGTACAGGACTGTAAAATATTAACTAAAGAGTTACATTTTCTAGTACTTGCGCACACTTATATAATTATTGCATGTCGAGTTCATTTTTCAGTCATGTTTAGAGTAGGAGCTTCATGAATTAAATGGAGTTTGACTGCAGGTTATTTTGTAAAGTATGTATGAAGCTGTATTTGTAATACATTTCCGCCATCTTACTTATCAGGTATATAGGATATTTGATCAATTCAGCTATTTGGAGAATCTCGAGTCTATGGTTTCATTATTTAACATCGTTATTAGTTTATTTTCCCTGAAGAGTTCAATAATTTTCTTTTTTAATTTTCAAGCTTTGGGTTCTTATGTGTTTGTGGTTATTTTAATTTTATAGATCTATGAGTGGCGTTGTGCACATTCTTTTAACAATTTATTAATACACTTCTGTTCCCATAAAAATGTGTTTGATTTATTGATTAGGTACGGATTCTCCTAATAATCATGATAAGCATCTATGGTTAGCTCCTGCTAAACTTTTTCAATTTAATTTGTTCTTCGCAGATGTTTTTTCATCATTTTTCTATCATTTCCTTGTTTGCCATGTACTATTTGCATTTGGAGCAGTTGCCGACACTTCAAGCTCGTCCTAATCTAATTCTACTTTACAGGGTACTAAATGTGACGTGCGAGAAGGAGAGGATGTAAAAATTGTAGTCAATTTTGTGCAGAAAAGTCTTAAATACATTGATATATGGGTATCTACTTCAAATTGTTCTTTCTCTTCCCCTTCCCTCCCCTTCTACATGAAGACCAAATGAGTAAATCTTGATTTCCATCAACTACAATATAAGTCTATTTGGTATCAAAGAATCTATATGATATTGAACATCTTAGATAGGTGGCCTTTAATGTTTGAACATGAATCATAACCTCGAGACCATCTAAATTTACTTGTCTCTTTTACTTTTGGCTGACTCGTGGTGGTGAAGATGTCGTTAATATAGCAATTTGATTGAAATCTTCAAAAAAAAAATTGAAAGTAGAACATGATATCTCTAGAATAATCCACATATACAGGATTTGTGTGCATGTATACGCTTTTTGTACTTGAGTAAATGAGCAAACACAGTAGGGATAACGCCAGCAATTATGAAATAGTAACTATTGAAATGAGAAATAGGTTGTTGTGTATAATGATGCTATTGAGATGTCCCACTAAAGAAATGCCTCGTGTGGATAGCTTTATCATGTCATTGAGGTTTTTTCATACAATCCTAACACGTGCCTGTCTGAAAAGCGTTGGCCTATACAATGCTTAGATGGACAAAGTATGCATTTTCATAATTTACAATTGCAATATTTAACGTATTATAGGAAACTGGACTTAAAAGAACAAAAAATGTTTCATCGTCTACTATTTCAATTGTTGATTGATTTTGGTGAGAGGATATGATGAGTCTCATACACAGTTTTTTTTATGTCTTATAATTCATACTACTTTGGTGGGATTTTGTTTGCTTCTATTGCTATTTAACGTATTGCAAGAACAATGCAGACCAATAATGCAGGGTCAAATGCTTATAGCTTTAAGCCTTTGCTCGAGACTTCAGATGAAGATCTCATGTGAGCTTCCTCCTTCTGATCTCCAAATCTCAATGACATGAAATGGAAATTCTTTTGGTTTATTCCTTAGACGCTCTCTAATGCAGTGAAGTTGTCACTACAAATGCTCTTGTAAATCATGCATAGTTCCTGACTTCTTGTTTAGGCAATAAAGATGATGTTAAACAAACCTCGAGGAGGTCATATTTTCAACATTGATGGGGCTGGTTCTGATGGGCGACCCACCCCTAGGTACTGTTCTTTCTATTATTAACATTCTCTCTTATGTCTGAACTTGTTATAAAGTTCTTCCTCTTATGTATAATTTTTTTCAAGAAGAATGCAGAAGGCATGAGAAACGCACAAGAAATCTATTGTGCATTTGGATGACATCCACAATGTGCTGCTCATTTCATCTCCATTACTTGAATAACAGATGGAGCAAATAATTTTATACCGAAACGTGTGAAGGTTTATTTCTCTTAAGCACTTCTGATGAATCTAAGGATAAATTAATATGAAATTATTAGGATGAGCCCAGACAGTTTGAATATATGTACAAGAGAAGACTTCAGACCTCCAATTGTTTATGGATGGGCCCTACAATCTATGTTAGAAAAAAAATTATGGTAACGATTGATTTTATATTTTTGTTTCTCTTTTTCCTCGGTAAGACAAATTGTTATATTTTGAAGGAGCCTATTAAGGTGGGTGAGGCTATTTACATGCATTTGTTCTGTTTATATAGTGATCACTTACTCTGTTACTGAAAAATAATAATAATAATAATTGCTCCTGCACTTCTTCTTCATGTCCGCGGCCTTTGAGTTTACAGGTCGCAGAATACCTTGGCCCAAACATAAGATCTATCCCAACCAATGGTTCAACAAGGCCCACGTACATTCGTTTCCTCACTGGACTGAAAGATTACTCTCAATTCTCAGTGGAGAAATGATTAATTACTTCTCAATTAAGTTGAAATGTTTTTTTTTTCTTTTCCTTCATCGTACCATCAACTAATTGTTTCGTGTTTCCCATTTTGTTCAGAGACTTGCTTTTGGTGCTAGAAGAAACAAATATCTTCTAGAAGATTGATAAGATCTTTAAGTACAATTTCCCATCCTGTAAGTTCTATCTGTAAAGCTTCACCTTTATTATTCCTCATCCAGGGGCATGGTTTGTTCACATTTTGTACACTGGTTATTGATTAAGCATGATGGGACCCGTTGGACTGTTCCTAAAAGACGACGCAATGAAATGATGCCATATTGTCTTTGATTTATATATATTTGGAAAACTGTTGTTTTTCATTGATTTACTTATTAGATGATTAATTGTAATTTATCATTCATATCTACCTGAAGTTGCAGCACTATTATCTTTTACCAGACCATTTGTAGAACATTTTCCTTTTTAAAAGGCAACTGAAATGGGGGGTTGGGTTAGCCCCGGTTCTTCAAAGCAATAATCGTCCTTGAATATTCCAGGGTGTGTAAATTTCGGTATGATTTGAGTTGGGCCACTTTTATTTTGAATTTATTATGAAGTTTGGAGATTTACAGATCTAACACTTCTTACACATGAATAATATTTAGGTTGACGATTCAAGACAAGTTAACCTCATCAAGGTATAATGTGTAATAAGTATTTGATCTTGTTTATTATTTTATTGTTGAGGCATTTTCGACATGTTAAAAGATATATTTACCCTGTTTATGAATCTTCAATTATTTTTAGTGTTACCCACTTGGTATAGCAAGTATACTTAATGTTAAAATATGATACCATCAGACAATGAGTTTGTTGATGGTTTTAAGGTTTGATTGTTGTAGGTAAGATTGGCTGTGCGAATCAAACCTCAAAAGCAACTTGCGGGTATGGCCTACAAATTTGGGGTATATCATTGGTTGCAGTACTGGAAAAAATAAATTGAAATTCGAATACGATTAAAATTGGAATGGTATTTGAAAGAAAAAAAAAACAGAGAAAAGGAATCAGATTGGTTTAGTAATGGAGTGTACAGTTTGATTTATCAATTAAATTAATTGTTAAGCAGGCAATAATTTAAAAATAACAATAAGTCTTAGATTTAAAAATAATGTCTTAGATATATCTATCAAATGTAAATTTGTGAAGAAATACTTGACCTTTTCTAATTTCAAATTGAAAAAATGAACAAAAAGAAGAAAAAAGAACCCAAAATGGGAAACATGAAATCTCCAGTACTTTTAAATCGCTAGGCTTGGAAATAAGTTAGGTATTAAGCTCTTAATTTTGTAATGAAACATGAGCCTTTT

mRNA sequence

TTCCGTTCTCCTTCATCTCGCGTAACGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGAGTTACAGTCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGAATAGGATATGCGGTTGCCAAACAGTTTCTGAAAGCAGGTGACAATGTTGTAATCTGTTCACTATCAGGTACGGATTCTCCTAATAATCATGATAAGCATCTATGGTTAGCTCCTGCTAAACTTTTTCAATTTAATTTGTTCTTCGCAGATGGTACTAAATGTGACGTGCGAGAAGGAGAGGATGTAAAAATTGTAGTCAATTTTGTGCAGAAAAGTCTTAAATACATTGATATATGGGCAATAAAGATGATGTTAAACAAACCTCGAGGAGGTCATATTTTCAACATTGATGGGGCTGGTTCTGATGGGCGACCCACCCCTAGGATGAGCCCAGACAGTTTGAATATATGTACAAGAGAAGACTTCAGACCTCCAATTGTCGCAGAATACCTTGGCCCAAACATAAGATCTATCCCAACCAATGGTTCAACAAGGCCCACGTACATTCGTTTCCTCACTGGACTGAAAGATTACTCTCAATTCTCAGTTGACGATTCAAGACAAGTTAACCTCATCAAGGTAAGATTGGCTGTGCGAATCAAACCTCAAAAGCAACTTGCGGGTATGGCCTACAAATTTGGGGTATATCATTGGTTGCAGTACTGGAAAAAATAAATTGAAATTCGAATACGATTAAAATTGGAATGGTATTTGAAAGAAAAAAAAAACAGAGAAAAGGAATCAGATTGGTTTAGTAATGGAGTGTACAGTTTGATTTATCAATTAAATTAATTGTTAAGCAGGCAATAATTTAAAAATAACAATAAGTCTTAGATTTAAAAATAATGTCTTAGATATATCTATCAAATGTAAATTTGTGAAGAAATACTTGACCTTTTCTAATTTCAAATTGAAAAAATGAACAAAAAGAAGAAAAAAGAACCCAAAATGGGAAACATGAAATCTCCAGTACTTTTAAATCGCTAGGCTTGGAAATAAGTTAGGTATTAAGCTCTTAATTTTGTAATGAAACATGAGCCTTTT

Coding sequence (CDS)

TTCCGTTCTCCTTCATCTCGCGTAACGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGAGTTACAGTCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGAATAGGATATGCGGTTGCCAAACAGTTTCTGAAAGCAGGTGACAATGTTGTAATCTGTTCACTATCAGGTACGGATTCTCCTAATAATCATGATAAGCATCTATGGTTAGCTCCTGCTAAACTTTTTCAATTTAATTTGTTCTTCGCAGATGGTACTAAATGTGACGTGCGAGAAGGAGAGGATGTAAAAATTGTAGTCAATTTTGTGCAGAAAAGTCTTAAATACATTGATATATGGGCAATAAAGATGATGTTAAACAAACCTCGAGGAGGTCATATTTTCAACATTGATGGGGCTGGTTCTGATGGGCGACCCACCCCTAGGATGAGCCCAGACAGTTTGAATATATGTACAAGAGAAGACTTCAGACCTCCAATTGTCGCAGAATACCTTGGCCCAAACATAAGATCTATCCCAACCAATGGTTCAACAAGGCCCACGTACATTCGTTTCCTCACTGGACTGAAAGATTACTCTCAATTCTCAGTTGACGATTCAAGACAAGTTAACCTCATCAAGGTAAGATTGGCTGTGCGAATCAAACCTCAAAAGCAACTTGCGGGTATGGCCTACAAATTTGGGGTATATCATTGGTTGCAGTACTGGAAAAAATAA

Protein sequence

FRSPSSRVTVASSSSLLLPVYAYQSANRRVTVFRLVVRARSCEFQFSIRIGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGEDVKIVVNFVQKSLKYIDIWAIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSPDSLNICTREDFRPPIVAEYLGPNIRSIPTNGSTRPTYIRFLTGLKDYSQFSVDDSRQVNLIKVRLAVRIKPQKQLAGMAYKFGVYHWLQYWKK
Homology
[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy Swiss-Prot
Match: Q84ST4 (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NOL PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-32
Identity = 95/256 (37.11%), Postives = 115/256 (44.92%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSG-------TDSPNNH-DKHLWLAPAKLFQFNLFFADGT 109
           IGYA+AK+FLKAGDNVVICS S        TD      ++H+W               G 
Sbjct: 85  IGYALAKEFLKAGDNVVICSRSAERVESAVTDLKKEFGEQHVW---------------GI 144

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
            CDVREG+DVK +V+F +  +KYIDIW                                 
Sbjct: 145 VCDVREGKDVKALVDFARDKMKYIDIWINNAGSNAYSYKPLVETSDEALMEVITTNTLGL 204

Query: 170 ------AIKMMLNKPRGGHIFNIDGAGSDGRPTPR---------------------MSPD 210
                 AI MM N+PRGGHIFNIDGAGSDGRPTPR                     +  +
Sbjct: 205 MICCREAINMMRNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMN 264

[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy Swiss-Prot
Match: Q8LEU3 (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NOL PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.9e-30
Identity = 91/255 (35.69%), Postives = 114/255 (44.71%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSG-------TDSPNNHDKHLWLAPAKLFQFNLFFADGTK 109
           IGYA+A++FLKAGDNVVICS S                +H+W               GTK
Sbjct: 91  IGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGEHVW---------------GTK 150

Query: 110 CDVREGEDVKIVVNFVQKSLKYIDIW---------------------------------- 169
           CDV EG+DV+ +V + QK+LKYIDIW                                  
Sbjct: 151 CDVTEGKDVRELVAYSQKNLKYIDIWINNAGSNAYSFKPLAEASDEDLIEVVKTNTLGLM 210

Query: 170 -----AIKMMLNKPRGGHIFNIDGAGSDGRPTPR-------------------------- 210
                A+ MML + RGGHIFNIDGAGSDGRPTPR                          
Sbjct: 211 LCCREAMNMMLTQSRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQD 270

[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy Swiss-Prot
Match: Q5N800 (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NYC1 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-11
Identity = 52/175 (29.71%), Postives = 75/175 (42.86%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSG-------TDSPNNHDKHLWLAPAKLFQFNLFF-ADGT 109
           +G A+A++FL +GD VVI S S         +   N  + L +A  K  +  L     GT
Sbjct: 182 LGKALAREFLLSGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGT 241

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
            CDV + EDVK +VNF +  L  IDIW                                 
Sbjct: 242 SCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGSL 301

Query: 170 -----AIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSPDSLNICTREDFRPPIVAE 179
                A+ +M ++ +GGH+FN+DGAGS G  TP  +      C    F+  ++ E
Sbjct: 302 LCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKE 356

[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy Swiss-Prot
Match: Q93ZA0 (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NYC1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 49/181 (27.07%), Postives = 71/181 (39.23%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSG------TDSPNNHDKHLWLAPAKLFQFNLFFAD--GT 109
           +G A+A++FL +GD V++ S S             + K +    ++  +  L  A   G 
Sbjct: 173 LGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLSDAKVVGI 232

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
            CDV + EDV+ + NF  K L  I+IW                                 
Sbjct: 233 ACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDITQIVSTNLIGSI 292

Query: 170 -----AIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSPDSLNICTREDFRPPIVAEYLGPN 185
                A+ +M  +  GGHIFN+DGAGS G  TP  +      C    F   IV E    N
Sbjct: 293 LCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSIVKESQKTN 352

[Close]
BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: XP_034692838.1 (chlorophyll(ide) b reductase NOL, chloroplastic isoform X3 [Vitis riparia])

HSP 1 Score: 161 bits (408), Expect = 2.91e-44
Identity = 98/210 (46.67%), Postives = 117/210 (55.71%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGE 109
           IG+A+A++FLKAGDNV+I S S     ++ +           +F      GT CDVR+GE
Sbjct: 87  IGFALAREFLKAGDNVIISSRSAERVESSVES-------LRREFGKHHVWGTTCDVRKGE 146

Query: 110 DVKIVVNFVQKSLKYIDIWAIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSP--------- 169
           DVK +V F Q++LKYIDIWAIKMMLN+PRGGHIFNIDGAGSDGRPTPR +          
Sbjct: 147 DVKDLVAFAQENLKYIDIWAIKMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVV 206

Query: 170 -------------DSLNICTREDFRP----------------------------PIVAEY 209
                        D  N+    +  P                             +VAEY
Sbjct: 207 HLTKSLQAELQMQDVKNVVVH-NLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEY 266

[Close]
BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: XP_038885313.1 (chlorophyll(ide) b reductase NOL, chloroplastic isoform X1 [Benincasa hispida] >XP_038885314.1 chlorophyll(ide) b reductase NOL, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 162 bits (411), Expect = 3.47e-44
Identity = 111/256 (43.36%), Postives = 126/256 (49.22%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNN--------HDKHLWLAPAKLFQFNLFFADGT 109
           IGYA+A+QFLKAGDNVVICS S     ++         ++H+W      F F      GT
Sbjct: 93  IGYALARQFLKAGDNVVICSRSAERVESSVQSLREEFGEQHVW------FPFQ-----GT 152

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
           +CDVREGED+K +V FVQK+LKYIDIW                                 
Sbjct: 153 RCDVREGEDIKNLVTFVQKNLKYIDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGL 212

Query: 170 ------AIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSP---------------------- 209
                 AIKMMLN+PRGGHIFNIDGAGSDGRPTPR +                       
Sbjct: 213 MICCREAIKMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQ 272

[Close]
BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: XP_022134271.1 (chlorophyll(ide) b reductase NOL, chloroplastic [Momordica charantia])

HSP 1 Score: 162 bits (409), Expect = 6.25e-44
Identity = 111/256 (43.36%), Postives = 124/256 (48.44%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNN--------HDKHLWLAPAKLFQFNLFFADGT 109
           IGYA+AKQFLKAGDNVVICS S     ++         ++H+W               GT
Sbjct: 93  IGYALAKQFLKAGDNVVICSRSAERVESSVQSLREEFGEQHVW---------------GT 152

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
           KCDVREGEDVK +V FVQK+LKYIDIW                                 
Sbjct: 153 KCDVREGEDVKNLVTFVQKNLKYIDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGL 212

Query: 170 ------AIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSP------------DSLNICTR-E 209
                 AIKMM N+PRGGHIFNIDGAGSDGRPTPR +              SL    R +
Sbjct: 213 MICCREAIKMMSNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQ 272

[Close]
BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: XP_038885315.1 (chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 161 bits (407), Expect = 1.24e-43
Identity = 109/256 (42.58%), Postives = 124/256 (48.44%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNN--------HDKHLWLAPAKLFQFNLFFADGT 109
           IGYA+A+QFLKAGDNVVICS S     ++         ++H+W               GT
Sbjct: 93  IGYALARQFLKAGDNVVICSRSAERVESSVQSLREEFGEQHVW---------------GT 152

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
           +CDVREGED+K +V FVQK+LKYIDIW                                 
Sbjct: 153 RCDVREGEDIKNLVTFVQKNLKYIDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGL 212

Query: 170 ------AIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSP---------------------- 209
                 AIKMMLN+PRGGHIFNIDGAGSDGRPTPR +                       
Sbjct: 213 MICCREAIKMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQ 272

[Close]
BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: XP_022992660.1 (chlorophyll(ide) b reductase NOL, chloroplastic [Cucurbita maxima])

HSP 1 Score: 160 bits (404), Expect = 3.53e-43
Identity = 110/248 (44.35%), Postives = 122/248 (49.19%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGE 109
           IGYA+AKQFLKAGDNVVICS S     ++         +   +F      GTKCDVREGE
Sbjct: 94  IGYALAKQFLKAGDNVVICSRSAERVESS-------VQSLREEFGEQRVWGTKCDVREGE 153

Query: 110 DVKIVVNFVQKSLKYIDIW---------------------------------------AI 169
           DVK +V FVQK+LKYIDIW                                       AI
Sbjct: 154 DVKNLVTFVQKNLKYIDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGLMICCREAI 213

Query: 170 KMMLNKPRGGHIFNIDGAGSDGRPTPRMSP------------DSLNICTR-EDFR----- 209
           KMMLN+PRGGHIFNIDGAGSDGRPTPR +              SL    R +D +     
Sbjct: 214 KMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVH 273

[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy TrEMBL
Match: A0A6J1BXF3 (chlorophyll(Ide) b reductase NOL, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006573 PE=3 SV=1)

HSP 1 Score: 162 bits (409), Expect = 3.03e-44
Identity = 111/256 (43.36%), Postives = 124/256 (48.44%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNN--------HDKHLWLAPAKLFQFNLFFADGT 109
           IGYA+AKQFLKAGDNVVICS S     ++         ++H+W               GT
Sbjct: 93  IGYALAKQFLKAGDNVVICSRSAERVESSVQSLREEFGEQHVW---------------GT 152

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
           KCDVREGEDVK +V FVQK+LKYIDIW                                 
Sbjct: 153 KCDVREGEDVKNLVTFVQKNLKYIDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGL 212

Query: 170 ------AIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSP------------DSLNICTR-E 209
                 AIKMM N+PRGGHIFNIDGAGSDGRPTPR +              SL    R +
Sbjct: 213 MICCREAIKMMSNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQ 272

[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy TrEMBL
Match: A0A6J1JWB8 (chlorophyll(Ide) b reductase NOL, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488939 PE=3 SV=1)

HSP 1 Score: 160 bits (404), Expect = 1.71e-43
Identity = 110/248 (44.35%), Postives = 122/248 (49.19%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGE 109
           IGYA+AKQFLKAGDNVVICS S     ++         +   +F      GTKCDVREGE
Sbjct: 94  IGYALAKQFLKAGDNVVICSRSAERVESS-------VQSLREEFGEQRVWGTKCDVREGE 153

Query: 110 DVKIVVNFVQKSLKYIDIW---------------------------------------AI 169
           DVK +V FVQK+LKYIDIW                                       AI
Sbjct: 154 DVKNLVTFVQKNLKYIDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGLMICCREAI 213

Query: 170 KMMLNKPRGGHIFNIDGAGSDGRPTPRMSP------------DSLNICTR-EDFR----- 209
           KMMLN+PRGGHIFNIDGAGSDGRPTPR +              SL    R +D +     
Sbjct: 214 KMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVH 273

[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy TrEMBL
Match: A0A6J1FGR3 (chlorophyll(Ide) b reductase NOL, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445527 PE=3 SV=1)

HSP 1 Score: 159 bits (401), Expect = 4.75e-43
Identity = 109/248 (43.95%), Postives = 122/248 (49.19%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGE 109
           IGYA+AKQFLKAGDNVVICS S     ++         +   +F      GT+CDVREGE
Sbjct: 94  IGYALAKQFLKAGDNVVICSRSAERVESS-------VQSLREEFGEQRVWGTRCDVREGE 153

Query: 110 DVKIVVNFVQKSLKYIDIW---------------------------------------AI 169
           DVK +V FVQK+LKYIDIW                                       AI
Sbjct: 154 DVKNLVTFVQKNLKYIDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGLMICCREAI 213

Query: 170 KMMLNKPRGGHIFNIDGAGSDGRPTPRMSP------------DSLNICTR-EDFR----- 209
           KMMLN+PRGGHIFNIDGAGSDGRPTPR +              SL    R +D +     
Sbjct: 214 KMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVH 273

[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy TrEMBL
Match: A0A1S3C3P2 (chlorophyll(Ide) b reductase NOL, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496530 PE=3 SV=1)

HSP 1 Score: 157 bits (398), Expect = 1.35e-42
Identity = 107/248 (43.15%), Postives = 123/248 (49.60%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGE 109
           IGYA+A+QFLK GDNVVICS S     ++         +   +F      GTKCDVREGE
Sbjct: 95  IGYALARQFLKEGDNVVICSRSAERVESS-------VQSLREEFGEQRVWGTKCDVREGE 154

Query: 110 DVKIVVNFVQKSLKYIDIW---------------------------------------AI 169
           DVK +V F+QK+LKYIDIW                                       AI
Sbjct: 155 DVKNLVAFLQKNLKYIDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGLMICCREAI 214

Query: 170 KMMLNKPRGGHIFNIDGAGSDGRPTPR--------------------------------- 209
           KMMLN+PRGGHIFNIDGAGSDGRPTPR                                 
Sbjct: 215 KMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVH 274

[Close]
BLAST of Cp4.1LG01g25160 vs. ExPASy TrEMBL
Match: A0A0A0KE83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046390 PE=3 SV=1)

HSP 1 Score: 157 bits (397), Expect = 1.85e-42
Identity = 106/248 (42.74%), Postives = 123/248 (49.60%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGE 109
           IGYA+A+QFLK GDNVVICS S     ++         +   +F      GTKCDVREGE
Sbjct: 94  IGYALARQFLKEGDNVVICSRSAERVESS-------VQSLREEFGEQRVWGTKCDVREGE 153

Query: 110 DVKIVVNFVQKSLKYIDIW---------------------------------------AI 169
           DVK +V F+QK+LKY+DIW                                       AI
Sbjct: 154 DVKNLVAFLQKNLKYVDIWINNAGSNAYSFKPLVEASDEDLIEVVTTNALGLMICCREAI 213

Query: 170 KMMLNKPRGGHIFNIDGAGSDGRPTPR--------------------------------- 209
           KMMLN+PRGGHIFNIDGAGSDGRPTPR                                 
Sbjct: 214 KMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVH 273

[Close]
BLAST of Cp4.1LG01g25160 vs. TAIR 10
Match: AT5G04900.1 (NYC1-like )

HSP 1 Score: 133.3 bits (334), Expect = 2.8e-31
Identity = 91/255 (35.69%), Postives = 114/255 (44.71%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSG-------TDSPNNHDKHLWLAPAKLFQFNLFFADGTK 109
           IGYA+A++FLKAGDNVVICS S                +H+W               GTK
Sbjct: 91  IGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGEHVW---------------GTK 150

Query: 110 CDVREGEDVKIVVNFVQKSLKYIDIW---------------------------------- 169
           CDV EG+DV+ +V + QK+LKYIDIW                                  
Sbjct: 151 CDVTEGKDVRELVAYSQKNLKYIDIWINNAGSNAYSFKPLAEASDEDLIEVVKTNTLGLM 210

Query: 170 -----AIKMMLNKPRGGHIFNIDGAGSDGRPTPR-------------------------- 210
                A+ MML + RGGHIFNIDGAGSDGRPTPR                          
Sbjct: 211 LCCREAMNMMLTQSRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQD 270

[Close]
BLAST of Cp4.1LG01g25160 vs. TAIR 10
Match: AT4G13250.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 8.8e-09
Identity = 49/181 (27.07%), Postives = 71/181 (39.23%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSG------TDSPNNHDKHLWLAPAKLFQFNLFFAD--GT 109
           +G A+A++FL +GD V++ S S             + K +    ++  +  L  A   G 
Sbjct: 173 LGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLSDAKVVGI 232

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
            CDV + EDV+ + NF  K L  I+IW                                 
Sbjct: 233 ACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDITQIVSTNLIGSI 292

Query: 170 -----AIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSPDSLNICTREDFRPPIVAEYLGPN 185
                A+ +M  +  GGHIFN+DGAGS G  TP  +      C    F   IV E    N
Sbjct: 293 LCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSIVKESQKTN 352

[Close]
BLAST of Cp4.1LG01g25160 vs. TAIR 10
Match: AT4G13250.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 8.8e-09
Identity = 49/181 (27.07%), Postives = 71/181 (39.23%), Query Frame = 0 

Query: 50  IGYAVAKQFLKAGDNVVICSLSG------TDSPNNHDKHLWLAPAKLFQFNLFFAD--GT 109
           +G A+A++FL +GD V++ S S             + K +    ++  +  L  A   G 
Sbjct: 171 LGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLSDAKVVGI 230

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW--------------------------------- 169
            CDV + EDV+ + NF  K L  I+IW                                 
Sbjct: 231 ACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDITQIVSTNLIGSI 290

Query: 170 -----AIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSPDSLNICTREDFRPPIVAEYLGPN 185
                A+ +M  +  GGHIFN+DGAGS G  TP  +      C    F   IV E    N
Sbjct: 291 LCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSIVKESQKTN 350

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g25160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84ST45.5e-3237.11Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa subsp. japonica ... [more]
Q8LEU33.9e-3035.69Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
Q5N8005.4e-1129.71Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp.... [more]
Q93ZA01.2e-0727.07Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thalian... [more]
BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_034692838.12.91e-4446.67chlorophyll(ide) b reductase NOL, chloroplastic isoform X3 [Vitis riparia][more]
XP_038885313.13.47e-4443.36chlorophyll(ide) b reductase NOL, chloroplastic isoform X1 [Benincasa hispida] >... [more]
XP_022134271.16.25e-4443.36chlorophyll(ide) b reductase NOL, chloroplastic [Momordica charantia][more]
XP_038885315.11.24e-4342.58chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Benincasa hispida][more]
XP_022992660.13.53e-4344.35chlorophyll(ide) b reductase NOL, chloroplastic [Cucurbita maxima][more]
BLAST of Cp4.1LG01g25160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BXF33.03e-4443.36chlorophyll(Ide) b reductase NOL, chloroplastic OS=Momordica charantia OX=3673 G... [more]
A0A6J1JWB81.71e-4344.35chlorophyll(Ide) b reductase NOL, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FGR34.75e-4343.95chlorophyll(Ide) b reductase NOL, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3C3P21.35e-4243.15chlorophyll(Ide) b reductase NOL, chloroplastic isoform X1 OS=Cucumis melo OX=36... [more]
A0A0A0KE831.85e-4242.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046390 PE=3 SV=1[more]
BLAST of Cp4.1LG01g25160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G04900.12.8e-3135.69NYC1-like [more]
AT4G13250.18.8e-0927.07NAD(P)-binding Rossmann-fold superfamily protein [more]
AT4G13250.28.8e-0927.07NAD(P)-binding Rossmann-fold superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.720coord: 47..177
e-value: 5.5E-6
score: 27.8
NoneNo IPR availablePANTHERPTHR24314NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATEDcoord: 175..210
NoneNo IPR availablePANTHERPTHR24314:SF15CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTICcoord: 175..210
NoneNo IPR availablePANTHERPTHR24314NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATEDcoord: 49..128
coord: 129..159
NoneNo IPR availablePANTHERPTHR24314:SF15CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTICcoord: 49..128
coord: 129..159
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 50..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25160.1Cp4.1LG01g25160.1mRNA