Cp4.1LG01g24920 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g24920
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RRM domain-containing protein
Location	Cp4.1LG01: 18647688 .. 18652250 (+)
RNA-Seq Expression	Cp4.1LG01g24920
Synteny	Cp4.1LG01g24920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTCTTCATTTGCAGGCAAACCCGAGCCAGGCTAGGCTATCACGTAAGCGGCTTCAATGGAGTTGCTCTCGCCCTCAGCAACCGTTAGCACATCAAATCAATTTTCATTCCATTCCTGCAAAACTCATTTCCAATCCTCCGCCATTAACATCAACTTCCGTCGATCACCAAGCAAGAAGAACAAATTCTCAATCTCTTCTTCTTCTTCTTCTTCTTATCTACACTCCACCGTTCCGCTTCGCTGTTCTGTTATAGTTAATTTAGCTTCCACATCCACGCCTTCTACTTCTTCTGTCTGGTCTCCGATCATCGGCGGAAACCGCCATTGGAGGGTCCTCATGGAGAGACCTCCATCAGGGTTCGATTCAAAGCCAGAAATCGTTGATTATTACGTTAAAGCGTTGGAAAGAGTTTTGGGCAGGTAGGTGTTCGTCGGATTTTCCAGTTTCATTGTGATGTATCTATTTTTTTTTTTTTCTGCTGATTTTTGTTTTGAATTGGGATTATTTGGCCAGTGAAAAGGATGCTCAGATGTGTATTTATGATGCTTCCTGGGATACCTACTTTGAGTTTTGCTGTGATATTGATGAACAAACTTCCATCGAGCTCGCCCGTAAGTTTCTACATATGTTGTGTCGATTGATTATGCATAGTAACTTTTGAAAAAAGTAATTCAAAGGAAAAGTACACTTTAAGAAACTTTCAAAGGAGTATTAGTAAGTTGTTCTCTTAGGATCACCTTAGAGCATTTTAGTGTTTTAAGGATTTTCAAGACCATTTCTAGGAGAGTTTTGGATAGTGATAGGTTTGGTTCGTTACGTATCGTCGCCAGTCTCATAATTTTAAAACGTGTCTGTTAGGGAGAGATTTCCACACCGTTGTAAGGAATGATTCATTTCCCTCTTCAATCGATGTGAGATCTCGCAATCCACCCCCTTGGGGTCTAGCGTCCTCGCTGGCACACCTCCCAATGTTTGGCTTTGATACCATTTGTAATAGCCCAAGCCCACCGCTAGCAAATATTGTCCGTTTTGGCCCATTACGTATTGTTGTCAGCCTCACAGTTTTAAAATGCGTCTACTAGGGAGAGGTTTCCACACCTTTGTAAGGAATGTTTCATTCCCCTCTCCAACCAACGTGGGATCTCACAATGCTTGGACTGTTACAATTGGTATAGAGCTAGACACTGGGTGATGTGCCAGTGAGGACGTTGGACTCCCAAGGGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACAAATAATTTCTTATAAAGGTGTGGAAATCTCTCCCTAACAGACACGTTTTAAAATCGTGAGGTTGACTGCGATACGTAATAGACCAAATTGGACAATATATGGTAGCGGTGGGCTTAGGCTGTTACAAATGGTATCAGAGCCAGACATCGGACGATGTGTCAACGAAGACGCTGGCCTCCAAGGGGGTGGATTGTGGAATCCCACATCGAATGGAGAGGGGAATGAAACATTCCTTATAAGCGTGTGGAAACTTCTCCTTAGTAGACGCGTTTTAAAACCGTGAGATTGACAACAATACGTAACGGACCAAAGCAGACAATATCCGGTAGCGGTGGGCTTGGACTATTACAAAAAGTCATTCCAAACTCACCATTTTGGTAGATTCATTGCTTATTTTCAACAGTTCATTTAAATTCTCACCAGACATTGCAATCTTTGTTGATGTTCATTCGAGCATGTGTTACAGGAGTACCAGGGGTAATATCTGTTAAGCCAGACCCAAACTTCAGCTCCACAGAGAAGGATCATGGTTCATCAACACCTCAATTGAATCCGAAATCGGACCCTCAAAACGGTGGTAGACTCTTATTCCCTTCAGGGAAAACGAAGCATTGGCTTGTTCGAATCGACAAGCCAGGTATCGGGGTGGTTACCAAGGCTCAAATGGTTGATTATTATGTTGAGATATTAACTAAAGTTCTGGGGAAGTAAGTTTACTATTGTATGTAACAAAAGCTGCCGTTTCATTTTGTTTATGATATTTTCATTGTCCTCAAGACTTGTTATGCCAATTATCTGCAGTGACAAGGATGCACAAATGTGTATATATCATATTTCCTGGCAGTCTAACTTCGGCTTTTGTTGTGAATTGGACGAGGAATGCGCACAAGAATTAACCGGTAATGTCCTGTTTCCAATGGCTATTCTAGACATTATTCTGCATAGTTCTTTGGGTTCTTATGCAAATCTCACAATATGCAGGTGTTCCTGGTGTTTTATCTGTTCAGCTGGATGCAAACTTTGAGGCAGAGAATAAGGATTATGGAGGTTCAATCTTCTAACCTTGAGTAAATCTTTCAATTCTAATGCTTAGTTGTAGTGTCATTGTGTGAGATTCCACGTCAGTTGGGAATGAGAACGAAACATTCTTTATAAGCGTTTTAAAGCCTTGAGGGGAAGCCCAAAGAGGACAATATCTGCTAGTAGTGGGTTTGAGTTGTTACATATGGTATCAGAGCCAGAGATCGGGGGATGTGCCAGTAAGGATGCTGGATCCCGAAGGGGGTGGATTGGGGGTCCCACATCGATTGGAGAAGGGAACGAGTGTCAGCGAGGACACTGGGGTCTGAAGGGGGATTGTGAGATCTCATATTGATTGGGGAGGAGAACAGAACATTCTTTATAAGGGTGTGGAAACCTCTCCATAGTAGACGCATTTTAAAACCTTGAGGGGAAGCTCGGAAGGAAAAGCCTTAGGACAATATCTGATAGTGGTGGACTTCGACTGTTACACCAATGATTTTTGCCCATTCTATTCAACTTGCATTTGGCTTTGGTTGATCCTACCTTGTTGAGGTCGTATATTTCAATATATTTCCTTGGGCTAGTGTAGTGCTTGCATGTTATATGGATGGCTCGAAGTTGCATGGTAAGATCGTCCGTAGGATACCATATATCTCCGAGTTGAATTAATGAAAATTACCAAAACGACACAAATATTAGGATAAATTGTTGGTATAAACCCAATATATTTGTCAAAGTCCACCGCTAGCAAATATTGTTTGCTTTGGTCCGATATGTCTCGTTGTCAGCCTCACAGTTTTAAAACGTGTCTGGTAGGCAGAGGTTTCCACATCCTTATAAGGAATGCTTTGTTCCTCTCTCCAACTGATGTGGGATCTCACACTCACAAGAGAGGAGTGTTGTGGCAGACTTATTCCTTCACTATCCCGTGGGACGGGATAGTGTAGCTCGAGAGGATTAGTAGGATCTTTAGAGAGGTTGAGAGGCTTTTGGAGGAGGTGTGGGGACATGACGAGGTTTAATGCCTCGTCATTGTCGTCGAGGTATCAAACTTTTTGCAATAATTAGTTGAATCTTACTCTTTTGGATTGGAGTTCGTTGAAGACAGACTTACTTTTTTTTAATGTCTTCGTATGTTCTTTCATTGTTCTCAATGAAAGCTCGATTTCGTATTTAAAAAATTATCAAGAACATTCACTAGAGTCATAATTTTATCTTGTTCCTAGTGATTCCTTTGAATTAATCACTTGCATTTTTCAGGTACTATTGCCAAGAATCCTTTGGATCTGCCAGATTCTTCAGAAACAAATCAAACTACTCCTGTGAAAACAAAGAAACTATTTATAACTGGTATTAACCTTGGCATGTTCTTCATCGAAGTGTTCCGACACTCGTCTTATTTACTATCAATCATTTCTGGACAGGTCTTTCGTTTTACACGTCGGAGAAAACGTTACGTGCTGCATTTGAAGGCTTCGGTGAGCTTGTCGAAGGTATGGTGCATTGATCTCGTCGTTTAAAGTTCGAACTAGACGTTTTCTCATGAGACAAAATCGTTTTGGTTTGATGGGCAGTTAAAATAATAATGGACAAGATTTCCAAAAGGTCCAAAGGGTATGCATTTATAGAGTATACAACAGAGGAAGCTGCTGGTGCTGCACTCAAAGAGATGAATGGCAAGGTGAATAAACATGAACTCTCTCCCTTTCTCTTCCTTTCTACTCTCTCCCATCTGGTTCATGCTGTATATATATGTGTGTGTGGTTGATGTAGATCATCAATGGCTGGATGATAGTTGTCGATGTTGCCAAGCCGAGCCCTCGGAGATACGGTGGAAACCGCTCTAGACCGTAGGTCGAAAAAGAACACGTATTTGTGTACTTCAACGTAGAATTTTGAGTAGTCTAGCAAAATTTGAGCCTAGAGGGATAGCTAGCCATATTTGAGTACCGATCTAAGGCGAGGGAAGGACGAACTCGTTGGCCTCGTCTATGATCGTTATGTCTTAAGATTTAGTTCGTTCGGTTCCACCTCTATGATGAGGCATATAAACCAAGGATGTCCGGCTTCTCGTCTCTTCATCTAGCTTATGTTCTTTATTTAGCATCCAAACCGACTCAAAATCGAGACTAGGCAGCGGTTAACGGTAGCTTGCTACGGTTTATGAAATGACAATCTAAACGAACGATCCTCATGGCACCTTTTGGATCATTTATGGATAAGAATTGTGTTTGTAGTCAAACTCATTTGGTACCATGGTGTATAAGAACTCA

mRNA sequence

CGTTCTTCATTTGCAGGCAAACCCGAGCCAGGCTAGGCTATCACGTAAGCGGCTTCAATGGAGTTGCTCTCGCCCTCAGCAACCGTTAGCACATCAAATCAATTTTCATTCCATTCCTGCAAAACTCATTTCCAATCCTCCGCCATTAACATCAACTTCCGTCGATCACCAAGCAAGAAGAACAAATTCTCAATCTCTTCTTCTTCTTCTTCTTCTTATCTACACTCCACCGTTCCGCTTCGCTGTTCTGTTATAGTTAATTTAGCTTCCACATCCACGCCTTCTACTTCTTCTGTCTGGTCTCCGATCATCGGCGGAAACCGCCATTGGAGGGTCCTCATGGAGAGACCTCCATCAGGGTTCGATTCAAAGCCAGAAATCGTTGATTATTACGTTAAAGCGTTGGAAAGAGTTTTGGGCAGTGAAAAGGATGCTCAGATGTGTATTTATGATGCTTCCTGGGATACCTACTTTGAGTTTTGCTGTGATATTGATGAACAAACTTCCATCGAGCTCGCCCGAGTACCAGGGGTAATATCTGTTAAGCCAGACCCAAACTTCAGCTCCACAGAGAAGGATCATGGTTCATCAACACCTCAATTGAATCCGAAATCGGACCCTCAAAACGGTGGTAGACTCTTATTCCCTTCAGGGAAAACGAAGCATTGGCTTGTTCGAATCGACAAGCCAGGTATCGGGGTGGTTACCAAGGCTCAAATGGTTGATTATTATGTTGAGATATTAACTAAAGTTCTGGGGAATGACAAGGATGCACAAATGTGTATATATCATATTTCCTGGCAGTCTAACTTCGGCTTTTGTTGTGAATTGGACGAGGAATGCGCACAAGAATTAACCGGTACTATTGCCAAGAATCCTTTGGATCTGCCAGATTCTTCAGAAACAAATCAAACTACTCCTGTGAAAACAAAGAAACTATTTATAACTGGTCTTTCGTTTTACACGTCGGAGAAAACGTTACGTGCTGCATTTGAAGGCTTCGGTGAGCTTGTCGAAGTTAAAATAATAATGGACAAGATTTCCAAAAGGTCCAAAGGGTATGCATTTATAGAGTATACAACAGAGGAAGCTGCTGGTGCTGCACTCAAAGAGATGAATGGCAAGATCATCAATGGCTGGATGATAGTTGTCGATGTTGCCAAGCCGAGCCCTCGGAGATACGGTGGAAACCGCTCTAGACCGTAGGTCGAAAAAGAACACGTATTTGTGTACTTCAACGTAGAATTTTGAGTAGTCTAGCAAAATTTGAGCCTAGAGGGATAGCTAGCCATATTTGAGTACCGATCTAAGGCGAGGGAAGGACGAACTCGTTGGCCTCGTCTATGATCGTTATGTCTTAAGATTTAGTTCGTTCGGTTCCACCTCTATGATGAGGCATATAAACCAAGGATGTCCGGCTTCTCGTCTCTTCATCTAGCTTATGTTCTTTATTTAGCATCCAAACCGACTCAAAATCGAGACTAGGCAGCGGTTAACGGTAGCTTGCTACGGTTTATGAAATGACAATCTAAACGAACGATCCTCATGGCACCTTTTGGATCATTTATGGATAAGAATTGTGTTTGTAGTCAAACTCATTTGGTACCATGGTGTATAAGAACTCA

Coding sequence (CDS)

ATGGAGTTGCTCTCGCCCTCAGCAACCGTTAGCACATCAAATCAATTTTCATTCCATTCCTGCAAAACTCATTTCCAATCCTCCGCCATTAACATCAACTTCCGTCGATCACCAAGCAAGAAGAACAAATTCTCAATCTCTTCTTCTTCTTCTTCTTCTTATCTACACTCCACCGTTCCGCTTCGCTGTTCTGTTATAGTTAATTTAGCTTCCACATCCACGCCTTCTACTTCTTCTGTCTGGTCTCCGATCATCGGCGGAAACCGCCATTGGAGGGTCCTCATGGAGAGACCTCCATCAGGGTTCGATTCAAAGCCAGAAATCGTTGATTATTACGTTAAAGCGTTGGAAAGAGTTTTGGGCAGTGAAAAGGATGCTCAGATGTGTATTTATGATGCTTCCTGGGATACCTACTTTGAGTTTTGCTGTGATATTGATGAACAAACTTCCATCGAGCTCGCCCGAGTACCAGGGGTAATATCTGTTAAGCCAGACCCAAACTTCAGCTCCACAGAGAAGGATCATGGTTCATCAACACCTCAATTGAATCCGAAATCGGACCCTCAAAACGGTGGTAGACTCTTATTCCCTTCAGGGAAAACGAAGCATTGGCTTGTTCGAATCGACAAGCCAGGTATCGGGGTGGTTACCAAGGCTCAAATGGTTGATTATTATGTTGAGATATTAACTAAAGTTCTGGGGAATGACAAGGATGCACAAATGTGTATATATCATATTTCCTGGCAGTCTAACTTCGGCTTTTGTTGTGAATTGGACGAGGAATGCGCACAAGAATTAACCGGTACTATTGCCAAGAATCCTTTGGATCTGCCAGATTCTTCAGAAACAAATCAAACTACTCCTGTGAAAACAAAGAAACTATTTATAACTGGTCTTTCGTTTTACACGTCGGAGAAAACGTTACGTGCTGCATTTGAAGGCTTCGGTGAGCTTGTCGAAGTTAAAATAATAATGGACAAGATTTCCAAAAGGTCCAAAGGGTATGCATTTATAGAGTATACAACAGAGGAAGCTGCTGGTGCTGCACTCAAAGAGATGAATGGCAAGATCATCAATGGCTGGATGATAGTTGTCGATGTTGCCAAGCCGAGCCCTCGGAGATACGGTGGAAACCGCTCTAGACCGTAG

Protein sequence

MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVPLRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVLGSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTPQLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQMCIYHISWQSNFGFCCELDEECAQELTGTIAKNPLDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP

Homology

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 5.3e-103
Identity = 210/399 (52.63%), Postives = 267/399 (66.92%), Query Frame = 0


Query: 3   LLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVPLR 62
           + S S  V  SN  S H     F  S  + N      +K      +S SSS+L       
Sbjct: 5   IASTSFFVPISNSSSSHIINNRFFPSFYSPNLNFGTFRK------TSLSSSHL------- 64

Query: 63  CSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVLGS 122
              + + ++ S P +S+V    +  N +W VL+++PP    SK  +VDYYV+ L +VLG+
Sbjct: 65  ---VFSSSAISAPPSSTV----LTRNSYWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGN 124

Query: 123 EKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTPQL 182
           EKDAQ+ IYDAS+DT+F FCC IDE  S +LA +PGV+S++P+ ++SS +K++G  +   
Sbjct: 125 EKDAQVSIYDASFDTHFGFCCHIDEDASRQLASLPGVVSIRPEQDYSSEKKNYGIGS--- 184

Query: 183 NPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQMC 242
                  + G  LF  G  KHW+VRIDKPG+G+VTKAQMVD+ V++L+KVL N+KDAQMC
Sbjct: 185 -------HKGVSLFDHGTVKHWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMC 244

Query: 243 IYHISWQSNFGFCCELDEECAQELTGTIAKNPLDLPDSS-------------------ET 302
           +YH+SWQS+FGFCC+LDE  A EL G      + +PD+S                   + 
Sbjct: 245 LYHVSWQSDFGFCCDLDERSAVELAGVPGVLAV-VPDNSFESLNKDYEGDSTQDSRDQDD 304

Query: 303 NQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 362
           +++ PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTE
Sbjct: 305 SESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTE 364

Query: 363 EAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 383
           EAAG ALKEMNGKIINGWMIVVDVAK  P R   NRS+P
Sbjct: 365 EAAGTALKEMNGKIINGWMIVVDVAKTKPFRQ--NRSQP 370

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-90
Identity = 181/305 (59.34%), Postives = 220/305 (72.13%), Query Frame = 0


Query: 91  WRVLMERPPS----GFDSKPEIVDYYVKALERVLGSEKDAQMCIYDASWDTYFEFCCDID 150
           W V+MERPP+    G  S+ E VD+YV  L RVLGS+++AQM IYDASWD  +EF C+ID
Sbjct: 73  WVVVMERPPAPAGGGEVSRAEAVDHYVATLARVLGSQEEAQMRIYDASWDGSYEFSCEID 132

Query: 151 EQTSIELARVPGVISVKPDPN-FSSTEKD-HGSSTPQLNPKSDPQNGGRLLFPSGKTKHW 210
           ++ S +LA++PGV++VKPD +    +EKD HGS     N  +           SG+ + W
Sbjct: 133 DEASRDLAKMPGVLAVKPDTDKVDMSEKDNHGSGLSAANLGNFSDAVSNHSSSSGENEFW 192

Query: 211 LVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQMCIYHISWQSNFGFCCELDEECAQ 270
           LVR++KPG+ VVTKAQMVD+Y + L KVLGN+KDAQ+ IYHISW+ ++GFCC +DEECA+
Sbjct: 193 LVRMEKPGVEVVTKAQMVDHYTQTLMKVLGNEKDAQVSIYHISWERDYGFCCHIDEECAK 252

Query: 271 EL---TGTIAKNP-------------LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTL 330
           EL   +G ++  P              D   SSE  Q   VKTK+LF+TGLSFYTSEKTL
Sbjct: 253 ELADVSGVLSVQPDTNFGSDNKNYKGDDSFKSSEATQ-AEVKTKRLFVTGLSFYTSEKTL 312

Query: 331 RAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVA 374
           RAAFE FGELVEVKIIMDKISKRSKGYAFIEYTTEEA GAALK MNG+IINGWMIVVDVA
Sbjct: 313 RAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVA 372

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.3e-88
Identity = 191/390 (48.97%), Postives = 243/390 (62.31%), Query Frame = 0


Query: 4   LSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVPLRC 63
           LS S ++ST+ +    S  +H  +S++ +  R    ++     SSS S            
Sbjct: 14  LSVSVSISTATKAGSQSISSHLSTSSLRLTARHRNRRRLPLLASSSESPP---------- 73

Query: 64  SVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFD----SKPEIVDYYVKALERV 123
                LA+ ST S S         +  W V+M+ PP+       S+ E VDYY   L +V
Sbjct: 74  ---AQLAAASTESQSR--------SSRWVVVMDTPPAAAGGSGVSRAEAVDYYAATLAQV 133

Query: 124 LGSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSST 183
           +GSEK+AQM I +ASWD  +EF C+IDE  S ELA++PGV+SV+ D    S + +H  S 
Sbjct: 134 VGSEKEAQMRICEASWDGTYEFRCEIDEDASKELAKMPGVLSVQLDMGNKSEKDNHSLSL 193

Query: 184 PQLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDA 243
              N  S   + G     SGK + WLVR++KPG+ VVTKAQMVD+Y +IL KVLGN++DA
Sbjct: 194 STANLVS--ISDGASTSSSGKNEFWLVRMEKPGVEVVTKAQMVDHYTQILMKVLGNEQDA 253

Query: 244 QMCIYHISWQSNFGFCCELDEECAQELT---GTIAKNP-------------LDLPDSSET 303
           Q+ IYH+SW  ++GFCC +DEECA+EL    G ++  P              D   SSE 
Sbjct: 254 QVSIYHVSWDRDYGFCCHIDEECAKELADVPGVLSVQPDTNFGSDNKNYKGDDGVKSSEG 313

Query: 304 NQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 363
                +KTK+LF+TGLSFYTSEKTLRAAFE FGELVEVKIIMD+ISKRSKGYAF+EYTTE
Sbjct: 314 TGAVDIKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTE 373

Query: 364 EAAGAALKEMNGKIINGWMIVVDVAKPSPR 374
           EA GAALK MNG+IINGWMIVVDVAK   R
Sbjct: 374 EAGGAALKAMNGQIINGWMIVVDVAKTRSR 380

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.9e-16
Identity = 42/106 (39.62%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 264 QELTGTIAKNPLDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 323
           +++ G +  + L    SS    ++     KL+++GLSF T+E TLR  FE FG L+ + +
Sbjct: 49  RDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNM 108

Query: 324 IMDKISKRSKGYAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAK 370
           +MDK++ R KG+AF+ Y TEE A  A++ M+GK ++G +I V+ AK
Sbjct: 109 VMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAK 154

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy Swiss-Prot
Match: Q9C7Y2 (Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF5 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-14
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 90  HWRVLMERPPSGFDSKPEIVDYYVKALERVLGSEKDAQMCIYDASWDTYFEFCCDIDEQT 149
           HW ++M++P     +K +++D YV+ L +++GSE++A+  IY+ S + YF F C+IDE+T
Sbjct: 95  HWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGFGCEIDEET 154

Query: 150 SIELARVPGVISVKPDPNFSSTEKDHGS 178
           S +L  +PGV+ + PD       KD+G+
Sbjct: 155 SNKLEGLPGVLFILPDSYVDQENKDYGA 182

[Close]

BLAST of Cp4.1LG01g24920 vs. NCBI nr
Match: XP_023524278.1 (organelle RRM domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 756 bits (1951), Expect = 7.71e-275
Identity = 382/404 (94.55%), Postives = 382/404 (94.55%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60
           MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP
Sbjct: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60

Query: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120
           LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL
Sbjct: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120

Query: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180
           GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP
Sbjct: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180

Query: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240
           QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ
Sbjct: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240

Query: 241 MCIYHISWQSNFGFCCELDEECAQELTG----------------------TIAKNPLDLP 300
           MCIYHISWQSNFGFCCELDEECAQELTG                      TIAKNPLDLP
Sbjct: 241 MCIYHISWQSNFGFCCELDEECAQELTGVPGVLSVQLDANFEAENKDYGGTIAKNPLDLP 300

Query: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360
           DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI
Sbjct: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360

Query: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 404

[Close]

BLAST of Cp4.1LG01g24920 vs. NCBI nr
Match: KAG7032943.1 (Organelle RRM domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 741 bits (1913), Expect = 4.77e-269
Identity = 374/404 (92.57%), Postives = 379/404 (93.81%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60
           MELLSPSATVSTSNQFSF SCKTHFQSSAININFRRSPSKKN+FSISSSSSSSYLHST+P
Sbjct: 1   MELLSPSATVSTSNQFSFRSCKTHFQSSAININFRRSPSKKNQFSISSSSSSSYLHSTLP 60

Query: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120
           LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFD+KPEIVDYYVKALERVL
Sbjct: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDTKPEIVDYYVKALERVL 120

Query: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180
           GSEKDAQMCIYDASWDT FEFCCDIDEQTS+ELARVPGVISVKPDPNFSS EKDHGSSTP
Sbjct: 121 GSEKDAQMCIYDASWDTDFEFCCDIDEQTSMELARVPGVISVKPDPNFSSKEKDHGSSTP 180

Query: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240
           QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ
Sbjct: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240

Query: 241 MCIYHISWQSNFGFCCELDEECAQELTG----------------------TIAKNPLDLP 300
           MCIYHISWQSNFGFCCELDEECAQELTG                      TIAKNPLDLP
Sbjct: 241 MCIYHISWQSNFGFCCELDEECAQELTGVPGVLSVQLDANFEAENKDYGGTIAKNPLDLP 300

Query: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360
           DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+
Sbjct: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFV 360

Query: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 404

[Close]

BLAST of Cp4.1LG01g24920 vs. NCBI nr
Match: XP_022960805.1 (organelle RRM domain-containing protein 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 734 bits (1895), Expect = 3.07e-266
Identity = 373/408 (91.42%), Postives = 378/408 (92.65%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSS----YLH 60
           MELLSPSATVS SNQFSF SCKTHFQSSAININFRRSPSKKN+FSISSSSSSS    YLH
Sbjct: 1   MELLSPSATVSASNQFSFRSCKTHFQSSAININFRRSPSKKNQFSISSSSSSSSSSSYLH 60

Query: 61  STVPLRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKAL 120
           STVPLRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFD+KPEIVDYYVKAL
Sbjct: 61  STVPLRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDTKPEIVDYYVKAL 120

Query: 121 ERVLGSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHG 180
           ERVLGSEKDAQMCIYDASWDT FEFCCDIDEQTS+ELARVPGVISVKPDPNFSS EKDHG
Sbjct: 121 ERVLGSEKDAQMCIYDASWDTDFEFCCDIDEQTSMELARVPGVISVKPDPNFSSKEKDHG 180

Query: 181 SSTPQLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGND 240
           SSTPQLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGND
Sbjct: 181 SSTPQLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGND 240

Query: 241 KDAQMCIYHISWQSNFGFCCELDEECAQELTG----------------------TIAKNP 300
           KDAQMCIYHISWQSNFGFCCELDEECAQELTG                      T+AKNP
Sbjct: 241 KDAQMCIYHISWQSNFGFCCELDEECAQELTGVPGVLSVQLDANFEAENKDYGGTVAKNP 300

Query: 301 LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 360
           LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG
Sbjct: 301 LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 360

Query: 361 YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           YAF+EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 YAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 408

[Close]

BLAST of Cp4.1LG01g24920 vs. NCBI nr
Match: XP_022990376.1 (organelle RRM domain-containing protein 1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 719 bits (1856), Expect = 1.99e-260
Identity = 365/404 (90.35%), Postives = 371/404 (91.83%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60
           MELL PSATVSTSNQFSFHSCKTHFQSSAININFRRSPSK+NKF +SSS    YLHSTVP
Sbjct: 1   MELLLPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKRNKFLLSSS----YLHSTVP 60

Query: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120
           LRCSVIVNLAS+STPSTSS+WSPIIG NRHWRVLMERPPSGFDSKP IVDYYVKALERVL
Sbjct: 61  LRCSVIVNLASSSTPSTSSLWSPIIGENRHWRVLMERPPSGFDSKPGIVDYYVKALERVL 120

Query: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180
           GSEKDAQMCIYDASWDT FEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP
Sbjct: 121 GSEKDAQMCIYDASWDTDFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180

Query: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240
           QLNPKSDPQNGGRLLFPSGKT +WLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ
Sbjct: 181 QLNPKSDPQNGGRLLFPSGKTNNWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240

Query: 241 MCIYHISWQSNFGFCCELDEECAQELTG----------------------TIAKNPLDLP 300
           MCIYHISWQ NFGFCCELDEECAQELTG                      T+AKNPLDLP
Sbjct: 241 MCIYHISWQFNFGFCCELDEECAQELTGVPGVLSVQLDANFEAENKDYGGTVAKNPLDLP 300

Query: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360
           DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI
Sbjct: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360

Query: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 400

[Close]

BLAST of Cp4.1LG01g24920 vs. NCBI nr
Match: XP_022990375.1 (organelle RRM domain-containing protein 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 717 bits (1852), Expect = 9.43e-260
Identity = 365/408 (89.46%), Postives = 371/408 (90.93%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60
           MELL PSATVSTSNQFSFHSCKTHFQSSAININFRRSPSK+NKF +SSS    YLHSTVP
Sbjct: 1   MELLLPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKRNKFLLSSS----YLHSTVP 60

Query: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120
           LRCSVIVNLAS+STPSTSS+WSPIIG NRHWRVLMERPPSGFDSKP IVDYYVKALERVL
Sbjct: 61  LRCSVIVNLASSSTPSTSSLWSPIIGENRHWRVLMERPPSGFDSKPGIVDYYVKALERVL 120

Query: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180
           GSEKDAQMCIYDASWDT FEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP
Sbjct: 121 GSEKDAQMCIYDASWDTDFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180

Query: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240
           QLNPKSDPQNGGRLLFPSGKT +WLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ
Sbjct: 181 QLNPKSDPQNGGRLLFPSGKTNNWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240

Query: 241 MCIYHISWQSNFGFCCELDEECAQELTG--------------------------TIAKNP 300
           MCIYHISWQ NFGFCCELDEECAQELTG                          T+AKNP
Sbjct: 241 MCIYHISWQFNFGFCCELDEECAQELTGVPGVLSVQLDANFEAENKDYGSKLHGTVAKNP 300

Query: 301 LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 360
           LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG
Sbjct: 301 LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 360

Query: 361 YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 404

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy TrEMBL
Match: A0A6J1HA56 (organelle RRM domain-containing protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461495 PE=4 SV=1)

HSP 1 Score: 734 bits (1895), Expect = 1.49e-266
Identity = 373/408 (91.42%), Postives = 378/408 (92.65%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSS----YLH 60
           MELLSPSATVS SNQFSF SCKTHFQSSAININFRRSPSKKN+FSISSSSSSS    YLH
Sbjct: 1   MELLSPSATVSASNQFSFRSCKTHFQSSAININFRRSPSKKNQFSISSSSSSSSSSSYLH 60

Query: 61  STVPLRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKAL 120
           STVPLRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFD+KPEIVDYYVKAL
Sbjct: 61  STVPLRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDTKPEIVDYYVKAL 120

Query: 121 ERVLGSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHG 180
           ERVLGSEKDAQMCIYDASWDT FEFCCDIDEQTS+ELARVPGVISVKPDPNFSS EKDHG
Sbjct: 121 ERVLGSEKDAQMCIYDASWDTDFEFCCDIDEQTSMELARVPGVISVKPDPNFSSKEKDHG 180

Query: 181 SSTPQLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGND 240
           SSTPQLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGND
Sbjct: 181 SSTPQLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGND 240

Query: 241 KDAQMCIYHISWQSNFGFCCELDEECAQELTG----------------------TIAKNP 300
           KDAQMCIYHISWQSNFGFCCELDEECAQELTG                      T+AKNP
Sbjct: 241 KDAQMCIYHISWQSNFGFCCELDEECAQELTGVPGVLSVQLDANFEAENKDYGGTVAKNP 300

Query: 301 LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 360
           LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG
Sbjct: 301 LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 360

Query: 361 YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           YAF+EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 YAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 408

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy TrEMBL
Match: A0A6J1JMS7 (organelle RRM domain-containing protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487251 PE=4 SV=1)

HSP 1 Score: 719 bits (1856), Expect = 9.65e-261
Identity = 365/404 (90.35%), Postives = 371/404 (91.83%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60
           MELL PSATVSTSNQFSFHSCKTHFQSSAININFRRSPSK+NKF +SSS    YLHSTVP
Sbjct: 1   MELLLPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKRNKFLLSSS----YLHSTVP 60

Query: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120
           LRCSVIVNLAS+STPSTSS+WSPIIG NRHWRVLMERPPSGFDSKP IVDYYVKALERVL
Sbjct: 61  LRCSVIVNLASSSTPSTSSLWSPIIGENRHWRVLMERPPSGFDSKPGIVDYYVKALERVL 120

Query: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180
           GSEKDAQMCIYDASWDT FEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP
Sbjct: 121 GSEKDAQMCIYDASWDTDFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180

Query: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240
           QLNPKSDPQNGGRLLFPSGKT +WLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ
Sbjct: 181 QLNPKSDPQNGGRLLFPSGKTNNWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240

Query: 241 MCIYHISWQSNFGFCCELDEECAQELTG----------------------TIAKNPLDLP 300
           MCIYHISWQ NFGFCCELDEECAQELTG                      T+AKNPLDLP
Sbjct: 241 MCIYHISWQFNFGFCCELDEECAQELTGVPGVLSVQLDANFEAENKDYGGTVAKNPLDLP 300

Query: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360
           DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI
Sbjct: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360

Query: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 400

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy TrEMBL
Match: A0A6J1JPX9 (organelle RRM domain-containing protein 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487251 PE=4 SV=1)

HSP 1 Score: 717 bits (1852), Expect = 4.56e-260
Identity = 365/408 (89.46%), Postives = 371/408 (90.93%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60
           MELL PSATVSTSNQFSFHSCKTHFQSSAININFRRSPSK+NKF +SSS    YLHSTVP
Sbjct: 1   MELLLPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKRNKFLLSSS----YLHSTVP 60

Query: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120
           LRCSVIVNLAS+STPSTSS+WSPIIG NRHWRVLMERPPSGFDSKP IVDYYVKALERVL
Sbjct: 61  LRCSVIVNLASSSTPSTSSLWSPIIGENRHWRVLMERPPSGFDSKPGIVDYYVKALERVL 120

Query: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180
           GSEKDAQMCIYDASWDT FEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP
Sbjct: 121 GSEKDAQMCIYDASWDTDFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180

Query: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240
           QLNPKSDPQNGGRLLFPSGKT +WLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ
Sbjct: 181 QLNPKSDPQNGGRLLFPSGKTNNWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240

Query: 241 MCIYHISWQSNFGFCCELDEECAQELTG--------------------------TIAKNP 300
           MCIYHISWQ NFGFCCELDEECAQELTG                          T+AKNP
Sbjct: 241 MCIYHISWQFNFGFCCELDEECAQELTGVPGVLSVQLDANFEAENKDYGSKLHGTVAKNP 300

Query: 301 LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 360
           LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG
Sbjct: 301 LDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 360

Query: 361 YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 404

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy TrEMBL
Match: A0A1S3C4A1 (uncharacterized protein LOC103496502 OS=Cucumis melo OX=3656 GN=LOC103496502 PE=4 SV=1)

HSP 1 Score: 629 bits (1621), Expect = 5.22e-225
Identity = 324/404 (80.20%), Postives = 342/404 (84.65%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60
           MELLSPS T +    FSFHS K HF+SSAIN +F    SK  KF +SSS    YL+STVP
Sbjct: 1   MELLSPSPTTN----FSFHSLKPHFRSSAINTHFPLPLSKTKKFLLSSS----YLYSTVP 60

Query: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120
           LRCSV VNLASTSTPSTSS+WSP  G NRHWRVLMERPPSG +SKP+++DYYVKALERVL
Sbjct: 61  LRCSVAVNLASTSTPSTSSLWSPTFGENRHWRVLMERPPSGLNSKPQVIDYYVKALERVL 120

Query: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180
           GSEKDAQMCIYDASWDT+F FCCDIDEQ SIELARVPGVISV+PDPN SS EKD+GSSTP
Sbjct: 121 GSEKDAQMCIYDASWDTHFGFCCDIDEQASIELARVPGVISVEPDPNLSSIEKDNGSSTP 180

Query: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240
            LN KS  QNG R+LFP G TKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ
Sbjct: 181 PLNLKSYSQNGSRVLFPLGNTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240

Query: 241 MCIYHISWQSNFGFCCELDEECAQELTGT----------------------IAKNPLDLP 300
           MCIYH+SWQS+FGFCCELDEECA+EL G                       IAKNPLDLP
Sbjct: 241 MCIYHVSWQSSFGFCCELDEECARELAGVPGVLSVQLDANFEAENKDYGGNIAKNPLDLP 300

Query: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360
           DSS T+QTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI
Sbjct: 301 DSSGTHQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360

Query: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 382
           EYTTEEAA AALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP
Sbjct: 361 EYTTEEAASAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 396

[Close]

BLAST of Cp4.1LG01g24920 vs. ExPASy TrEMBL
Match: A0A0A0KB33 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G045080 PE=4 SV=1)

HSP 1 Score: 622 bits (1605), Expect = 1.32e-222
Identity = 320/402 (79.60%), Postives = 340/402 (84.58%), Query Frame = 0


Query: 1   MELLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVP 60
           MELLSP+ T +    FSFHS K HFQSSAINI+F    SK  KF +SSS    YL+STVP
Sbjct: 1   MELLSPTPTTN----FSFHSLKPHFQSSAINISFPLPLSKTKKFLLSSS----YLYSTVP 60

Query: 61  LRCSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVL 120
           LRCSV VNLASTSTPSTSS+WSP  G NRHWRVLMERPPSG +SKP+++DYYVKALERVL
Sbjct: 61  LRCSVAVNLASTSTPSTSSLWSPTFGENRHWRVLMERPPSGLNSKPQVIDYYVKALERVL 120

Query: 121 GSEKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTP 180
           GSEKDAQMCIYDASWDT F FCCDIDEQ SIELARVPGVISV+PDPNFSS EKD+GSSTP
Sbjct: 121 GSEKDAQMCIYDASWDTRFGFCCDIDEQASIELARVPGVISVEPDPNFSSIEKDNGSSTP 180

Query: 181 QLNPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240
            LN KS  QNG R+LFP G TKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ
Sbjct: 181 PLNLKSYSQNGSRVLFPLGNTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQ 240

Query: 241 MCIYHISWQSNFGFCCELDEECAQELTGT----------------------IAKNPLDLP 300
           MCIYH+SWQS+FGFCCELDEECA+EL G                       IAKNP DLP
Sbjct: 241 MCIYHVSWQSSFGFCCELDEECARELAGVPGVLSVQLDANFEAENKDYGGNIAKNPSDLP 300

Query: 301 DSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI 360
           DSS T+QTTPVKTKKLFITGLSFYTSEKTLRAAFEGFG+LVEVKIIMDKISKRSKGYAF+
Sbjct: 301 DSSGTHQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFV 360

Query: 361 EYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRS 380
           EYTTEEAA AALKEMNGKIINGWMIVVD+AKPSPRRYGGNRS
Sbjct: 361 EYTTEEAASAALKEMNGKIINGWMIVVDIAKPSPRRYGGNRS 394

[Close]

BLAST of Cp4.1LG01g24920 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 375.9 bits (964), Expect = 3.7e-104
Identity = 210/399 (52.63%), Postives = 267/399 (66.92%), Query Frame = 0


Query: 3   LLSPSATVSTSNQFSFHSCKTHFQSSAININFRRSPSKKNKFSISSSSSSSYLHSTVPLR 62
           + S S  V  SN  S H     F  S  + N      +K      +S SSS+L       
Sbjct: 5   IASTSFFVPISNSSSSHIINNRFFPSFYSPNLNFGTFRK------TSLSSSHL------- 64

Query: 63  CSVIVNLASTSTPSTSSVWSPIIGGNRHWRVLMERPPSGFDSKPEIVDYYVKALERVLGS 122
              + + ++ S P +S+V    +  N +W VL+++PP    SK  +VDYYV+ L +VLG+
Sbjct: 65  ---VFSSSAISAPPSSTV----LTRNSYWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGN 124

Query: 123 EKDAQMCIYDASWDTYFEFCCDIDEQTSIELARVPGVISVKPDPNFSSTEKDHGSSTPQL 182
           EKDAQ+ IYDAS+DT+F FCC IDE  S +LA +PGV+S++P+ ++SS +K++G  +   
Sbjct: 125 EKDAQVSIYDASFDTHFGFCCHIDEDASRQLASLPGVVSIRPEQDYSSEKKNYGIGS--- 184

Query: 183 NPKSDPQNGGRLLFPSGKTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQMC 242
                  + G  LF  G  KHW+VRIDKPG+G+VTKAQMVD+ V++L+KVL N+KDAQMC
Sbjct: 185 -------HKGVSLFDHGTVKHWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMC 244

Query: 243 IYHISWQSNFGFCCELDEECAQELTGTIAKNPLDLPDSS-------------------ET 302
           +YH+SWQS+FGFCC+LDE  A EL G      + +PD+S                   + 
Sbjct: 245 LYHVSWQSDFGFCCDLDERSAVELAGVPGVLAV-VPDNSFESLNKDYEGDSTQDSRDQDD 304

Query: 303 NQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 362
           +++ PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTE
Sbjct: 305 SESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTE 364

Query: 363 EAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSRP 383
           EAAG ALKEMNGKIINGWMIVVDVAK  P R   NRS+P
Sbjct: 365 EAAGTALKEMNGKIINGWMIVVDVAKTKPFRQ--NRSQP 370

[Close]

BLAST of Cp4.1LG01g24920 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 3.5e-17
Identity = 42/106 (39.62%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 264 QELTGTIAKNPLDLPDSSETNQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 323
           +++ G +  + L    SS    ++     KL+++GLSF T+E TLR  FE FG L+ + +
Sbjct: 49  RDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNM 108

Query: 324 IMDKISKRSKGYAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAK 370
           +MDK++ R KG+AF+ Y TEE A  A++ M+GK ++G +I V+ AK
Sbjct: 109 VMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAK 154

[Close]

BLAST of Cp4.1LG01g24920 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-16
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 293 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAAGAALKE 352
           K+ +  L F TSE  L+  F  FGE+ EVK+I D+  KRSKGYAFI++T+++ A  A++ 
Sbjct: 41  KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100

Query: 353 MNGKIINGWMIVVDVAKPSPRRYGG 378
           M+ ++ NG MI +D+AKP  R + G
Sbjct: 101 MDRRMYNGRMIYIDIAKPGKRDFQG 125

[Close]

BLAST of Cp4.1LG01g24920 vs. TAIR 10
Match: AT1G32580.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-16
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 90  HWRVLMERPPSGFDSKPEIVDYYVKALERVLGSEKDAQMCIYDASWDTYFEFCCDIDEQT 149
           HW ++M++P     +K +++D YV+ L +++GSE++A+  IY+ S + YF F C+IDE+T
Sbjct: 95  HWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGFGCEIDEET 154

Query: 150 SIELARVPGVISVKPDPNFSSTEKDHGS 178
           S +L  +PGV+ + PD       KD+G+
Sbjct: 155 SNKLEGLPGVLFILPDSYVDQENKDYGA 182

[Close]

BLAST of Cp4.1LG01g24920 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-16
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 293 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAAGAALKE 352
           +LF++GLS  T+ + L+ AF  FG+LV+ ++I D+ S RSKG+ F+ Y T E A  A  E
Sbjct: 35  RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94

Query: 353 MNGKIINGWMIVVDVAKP-SPRR 375
           MN K ++GW+I VD A+P  PRR
Sbjct: 95  MNAKFLDGWVIFVDPARPREPRR 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g24920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L440	5.3e-103	52.63	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q6YWP9	1.0e-90	59.34	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
C0HFE5	1.3e-88	48.97	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q9FX45	4.9e-16	39.62	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9C7Y2	1.2e-14	38.64	Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial OS=Arabido...	[more]

BLAST of Cp4.1LG01g24920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524278.1	7.71e-275	94.55	organelle RRM domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. ...	[more]
KAG7032943.1	4.77e-269	92.57	Organelle RRM domain-containing protein 1, chloroplastic, partial [Cucurbita arg...	[more]
XP_022960805.1	3.07e-266	91.42	organelle RRM domain-containing protein 1, chloroplastic [Cucurbita moschata]	[more]
XP_022990376.1	1.99e-260	90.35	organelle RRM domain-containing protein 1, chloroplastic isoform X2 [Cucurbita m...	[more]
XP_022990375.1	9.43e-260	89.46	organelle RRM domain-containing protein 1, chloroplastic isoform X1 [Cucurbita m...	[more]

BLAST of Cp4.1LG01g24920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HA56	1.49e-266	91.42	organelle RRM domain-containing protein 1, chloroplastic OS=Cucurbita moschata O...	[more]
A0A6J1JMS7	9.65e-261	90.35	organelle RRM domain-containing protein 1, chloroplastic isoform X2 OS=Cucurbita...	[more]
A0A6J1JPX9	4.56e-260	89.46	organelle RRM domain-containing protein 1, chloroplastic isoform X1 OS=Cucurbita...	[more]
A0A1S3C4A1	5.22e-225	80.20	uncharacterized protein LOC103496502 OS=Cucumis melo OX=3656 GN=LOC103496502 PE=...	[more]
A0A0A0KB33	1.32e-222	79.60	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G045080 PE=4 SV...	[more]

BLAST of Cp4.1LG01g24920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20930.1	3.7e-104	52.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	3.5e-17	39.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G20030.1	1.3e-16	45.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G32580.1	8.6e-16	38.64	plastid developmental protein DAG, putative	[more]
AT2G37510.1	8.6e-16	48.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 293..366 e-value: 1.4E-25 score: 101.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 294..360 e-value: 2.9E-19 score: 68.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 292..370 score: 18.649113
IPR037045	Peptidase S8 propeptide/proteinase inhibitor I9 superfamily	GENE3D	3.30.70.80	Peptidase S8 propeptide/proteinase inhibitor I9	coord: 86..169 e-value: 4.1E-5 score: 25.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 276..382 e-value: 4.2E-30 score: 106.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..188
None	No IPR available	PANTHER	PTHR31346:SF11	ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC	coord: 286..381 coord: 25..268
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	coord: 286..381 coord: 25..268
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 282..380

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g24920.1	Cp4.1LG01g24920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing
biological_process	GO:0080156	mitochondrial mRNA modification
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding