Cp4.1LG01g24340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g24340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG01: 19081239 .. 19083162 (-)
RNA-Seq Expression	Cp4.1LG01g24340
Synteny	Cp4.1LG01g24340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAGAAGCTCGACCACGGAATTCCAAGATCCCAACCCAACTGGATATTCCACGTCAGCAAAGAAAATGGATTGAGAAGTTCCAGCTGGCCCAATGAGATCACAAAACCAACCCATACTTAGCCAATGAAAGGCAATCTTCAGATTCCCCAATCTTTGTCTTGCAAGTGTTTTTAGTCTCCTTCTCCCCCCCTTCATCTTCCGCCATTCCCACTCTCTCTTCGATCTCTGCCACTGTTTTTCAATGGCTTCCAACACCTTGATGAGCTTCGGCATTGCCACCACCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCACCGGTGTCCCGATTTCCGGCGTCTCCGTTAATGCTTCCTCTCGATTTTCCATGTCCGCTGACTGGATGCCTGGCCAGCCCCGCCCGCCGTACCTTGACGGCTCTGCCCCCGGGTATTGAAATTTGAAATGTTCTTTTTATTTCGCAAAATCTGGTGGTTCTTTTTTTTGTTGATGTGGGATGATTGCCCTCTAGATGTTTGATGAAATGCCTGAGTCACGACTGTCTTTTGGGTTCTGTGAATTGTCCTTGATTTGTTGAAATTGTTAGAGAATGTGAATCCATGTTTGAATTTACCGTTACTTAGTTCTTGAGATGTGTGGTTGTGTTCAACAGTGATTTTGGCTTTGACCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTGTAAGTTTTCCAAATCCAGTTGCTTGATTCTGAGATTATGGGGCTGTTCTTTTTCTCCACTGATGATGAATTTTCATACTCTTTGTTCTGTTTTTCAGCCAGGGATGTTGGTACCTGAGGCGTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCTATTCCAGGAGGTCAAGCTACCTACCTGGGGCAGCCAGTTCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGACCCATTGGGCTACTCCAAAAACCCTGAAAAGTTGAAGGAATACAAAGTCAAGGAGATCAAAAATGGTGAGGCCTTTCATTTCCACTAGAACTTGAAGCACTCTGTTAGGAAAGAACGTGAAAAGTGACTATTTTTTTTTTTTTTTGTAGGTCGGTTGGCGTTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCGGCATACCCAGGAACAGGGCCACTCGAGAACTTGGCTACACACTTGGCTGACCCATGGCACAACAACATTGGCGACATCATCATCCCCAGAACGATTTCCCCTTGAATTTTGTCTTAAATCATACCAAATGTAATTAAATTTCTCCCTGTCCTGAATCTGAACTCGATGGTTTTCCCTCCCTTTGCGGCTTTGAATGTGCTGTGTATCTTGATATTGCCCCTCATTTCAGTGCATCAAGTTACCATTGGAGGAAAAACGAAGCATCATTTAGCATAAGACTCCATTATTAGTTTTATTCACCACTAGTTCGCCCTTACCTATTTCTGCTCGAGCCTCTCCTTCACCTCCTAAACTCAGCACCTATTTGTTTAAGTCTCTCTATCATTTAAACCGGGCTCTTGAAATAATCTCCACACACCCTTCTGTCTCGAATGCTCAGCTAAAACGTCAAACCAAAAATCATAACTAATTGGGCTAGTCATTGCAAGCCTGTAAGACACAATGGTGGACTTCGGCCCAATCTGATTAACAAGCAGATGGTGGTGTGAGCCCAATAGATCATTACCGTCCATTGGGCTAAAGGCCCATAAACCTGGACAAGAAAGCCCAAATAAATAGGCCCATTGAATGATGAAAATT

mRNA sequence

TGGAAGAAGCTCGACCACGGAATTCCAAGATCCCAACCCAACTGGATATTCCACGTCAGCAAAGAAAATGGATTGAGAAGTTCCAGCTGGCCCAATGAGATCACAAAACCAACCCATACTTAGCCAATGAAAGGCAATCTTCAGATTCCCCAATCTTTGTCTTGCAAGTGTTTTTAGTCTCCTTCTCCCCCCCTTCATCTTCCGCCATTCCCACTCTCTCTTCGATCTCTGCCACTGTTTTTCAATGGCTTCCAACACCTTGATGAGCTTCGGCATTGCCACCACCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCACCGGTGTCCCGATTTCCGGCGTCTCCGTTAATGCTTCCTCTCGATTTTCCATGTCCGCTGACTGGATGCCTGGCCAGCCCCGCCCGCCGTACCTTGACGGCTCTGCCCCCGGTGATTTTGGCTTTGACCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATGTTGGTACCTGAGGCGTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCTATTCCAGGAGGTCAAGCTACCTACCTGGGGCAGCCAGTTCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGACCCATTGGGCTACTCCAAAAACCCTGAAAAGTTGAAGGAATACAAAGTCAAGGAGATCAAAAATGGTCGGTTGGCGTTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCGGCATACCCAGGAACAGGGCCACTCGAGAACTTGGCTACACACTTGGCTGACCCATGGCACAACAACATTGGCGACATCATCATCCCCAGAACGATTTCCCCTTGAATTTTGTCTTAAATCATACCAAATGTAATTAAATTTCTCCCTGTCCTGAATCTGAACTCGATGGTTTTCCCTCCCTTTGCGGCTTTGAATGTGCTGTGTATCTTGATATTGCCCCTCATTTCAGTGCATCAAGTTACCATTGGAGGAAAAACGAAGCATCATTTAGCATAAGACTCCATTATTAGTTTTATTCACCACTAGTTCGCCCTTACCTATTTCTGCTCGAGCCTCTCCTTCACCTCCTAAACTCAGCACCTATTTGTTTAAGTCTCTCTATCATTTAAACCGGGCTCTTGAAATAATCTCCACACACCCTTCTGTCTCGAATGCTCAGCTAAAACGTCAAACCAAAAATCATAACTAATTGGGCTAGTCATTGCAAGCCTGTAAGACACAATGGTGGACTTCGGCCCAATCTGATTAACAAGCAGATGGTGGTGTGAGCCCAATAGATCATTACCGTCCATTGGGCTAAAGGCCCATAAACCTGGACAAGAAAGCCCAAATAAATAGGCCCATTGAATGATGAAAATT

Coding sequence (CDS)

ATGGCTTCCAACACCTTGATGAGCTTCGGCATTGCCACCACCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCACCGGTGTCCCGATTTCCGGCGTCTCCGTTAATGCTTCCTCTCGATTTTCCATGTCCGCTGACTGGATGCCTGGCCAGCCCCGCCCGCCGTACCTTGACGGCTCTGCCCCCGGTGATTTTGGCTTTGACCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATGTTGGTACCTGAGGCGTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCTATTCCAGGAGGTCAAGCTACCTACCTGGGGCAGCCAGTTCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGACCCATTGGGCTACTCCAAAAACCCTGAAAAGTTGAAGGAATACAAAGTCAAGGAGATCAAAAATGGTCGGTTGGCGTTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCGGCATACCCAGGAACAGGGCCACTCGAGAACTTGGCTACACACTTGGCTGACCCATGGCACAACAACATTGGCGACATCATCATCCCCAGAACGATTTCCCCTTGA

Protein sequence

MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRTISP

Homology

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BLAST of Cp4.1LG01g24340 vs. ExPASy Swiss-Prot
Match: P12360 (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB6A PE=2 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.4e-117
Identity = 207/246 (84.15%), Postives = 218/246 (88.62%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GI     PS LSS+KSKFA  +P+   + N  SRFSMSADWMPGQPRP YL
Sbjct: 1   MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFD L LGEVP NLER+KESELIHCRWAMLAVPG++VPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAIPGGQATYLGQPVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           K+P K +E KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGD+II
Sbjct: 181 KDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 240

Query: 241 PRTISP 247
           P+ I P
Sbjct: 241 PKGIFP 245

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BLAST of Cp4.1LG01g24340 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 5.0e-115
Identity = 203/242 (83.88%), Postives = 218/242 (90.08%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SK+P+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 241 IP 242
           IP
Sbjct: 241 IP 239

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BLAST of Cp4.1LG01g24340 vs. ExPASy Swiss-Prot
Match: Q9SDM1 (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.2e-103
Identity = 176/228 (77.19%), Postives = 195/228 (85.53%), Query Frame = 0


Query: 17  PSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYLDGSAPGDFGFDPLRLG 76
           PS+L+ S     +G+P    +   S R +MSA+W PGQPRP +LDGS+PGDFGFDPL L 
Sbjct: 16  PSLLAPSSRSGRSGLPFCAYA-TTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLA 75

Query: 77  EVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAAIPGGQATYLGQPVP 136
            VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQEWAA+P GQATYLG PVP
Sbjct: 76  TVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVP 135

Query: 137 WGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKNPEKLKEYKVKEIKN 196
           WG LPTIL IEFLAIAF E QR+MEKDPEKKKYPGGAFDPLG+SK+P K +E K+KEIKN
Sbjct: 136 WGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKN 195

Query: 197 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRTI 245
           GRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+IPR I
Sbjct: 196 GRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 242

[Close]

BLAST of Cp4.1LG01g24340 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-37
Identity = 96/236 (40.68%), Postives = 128/236 (54.24%), Query Frame = 0


Query: 20  LSSSKSKFATGVPISGVSVNASSRFSMSA---DWMPGQPRPPYLDGSAPGDFGFDPLRLG 79
           L  S  K   GV    V  + S+ F + A   +W+PG   P YL GS PGD GFDPL L 
Sbjct: 23  LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLA 82

Query: 80  EVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAAIPGGQATYLGQPVP 139
           E PENL  F ++EL++ RWAML V GML+PE       +   +W A   G+  Y      
Sbjct: 83  EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEY------ 142

Query: 140 WGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGY 199
           + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG F+PL +
Sbjct: 143 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNF 202

Query: 200 SKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 236
           +       E K KEI NGRLA+LAF+GF +Q +   G GP +NL  H++DPWHN I
Sbjct: 203 APT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 245

[Close]

BLAST of Cp4.1LG01g24340 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-37
Identity = 94/232 (40.52%), Postives = 125/232 (53.88%), Query Frame = 0


Query: 50  WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 109
           W PG   P +LDGS  GD+GFDP  LG+  E                             
Sbjct: 58  WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117

Query: 110 --------------NLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAAIPGG 169
                          ++RF+E ELIH RWAMLA  G L  E L    W  A +   + G 
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 177

Query: 170 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKNPEK 229
            ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + +PEK
Sbjct: 178 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 237

Query: 230 LKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 238
             + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

[Close]

BLAST of Cp4.1LG01g24340 vs. NCBI nr
Match: XP_022921712.1 (chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_023515265.1 chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG6602321.1 Chlorophyll a-b binding protein 6A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 503 bits (1294), Expect = 1.23e-179
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. NCBI nr
Match: XP_022990443.1 (chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 501 bits (1291), Expect = 3.52e-179
Identity = 245/246 (99.59%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           +NPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 RNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. NCBI nr
Match: KAG7033004.1 (Chlorophyll a-b binding protein 6A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 496 bits (1276), Expect = 8.82e-177
Identity = 246/253 (97.23%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPG-------DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN
Sbjct: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 246
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 253

[Close]

BLAST of Cp4.1LG01g24340 vs. NCBI nr
Match: XP_004143800.1 (chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus])

HSP 1 Score: 488 bits (1257), Expect = 5.38e-174
Identity = 238/246 (96.75%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA GVPISGV+VNASSRFSMSA+WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           K+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. NCBI nr
Match: XP_008453995.1 (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo] >KAA0048040.1 chlorophyll a-b binding protein 6A [Cucumis melo var. makuwa])

HSP 1 Score: 488 bits (1255), Expect = 1.09e-173
Identity = 237/246 (96.34%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA  VPISGV+VNASSRFSMS++WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           K+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. ExPASy TrEMBL
Match: A0A6J1E190 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111429876 PE=3 SV=1)

HSP 1 Score: 503 bits (1294), Expect = 5.95e-180
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. ExPASy TrEMBL
Match: A0A6J1JTA7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487298 PE=3 SV=1)

HSP 1 Score: 501 bits (1291), Expect = 1.71e-179
Identity = 245/246 (99.59%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           +NPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 RNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. ExPASy TrEMBL
Match: A0A0A0KNM4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G490820 PE=3 SV=1)

HSP 1 Score: 488 bits (1257), Expect = 2.61e-174
Identity = 238/246 (96.75%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA GVPISGV+VNASSRFSMSA+WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           K+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. ExPASy TrEMBL
Match: A0A5A7TXV7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001080 PE=3 SV=1)

HSP 1 Score: 488 bits (1255), Expect = 5.26e-174
Identity = 237/246 (96.34%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA  VPISGV+VNASSRFSMS++WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           K+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. ExPASy TrEMBL
Match: A0A1S3BYE0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494548 PE=3 SV=1)

HSP 1 Score: 488 bits (1255), Expect = 5.26e-174
Identity = 237/246 (96.34%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA  VPISGV+VNASSRFSMS++WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           K+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 246
           PRTISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Cp4.1LG01g24340 vs. TAIR 10
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 415.2 bits (1066), Expect = 3.6e-116
Identity = 203/242 (83.88%), Postives = 218/242 (90.08%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SK+P+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 241 IP 242
           IP
Sbjct: 241 IP 239

[Close]

BLAST of Cp4.1LG01g24340 vs. TAIR 10
Match: AT3G54890.2 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 331.6 bits (849), Expect = 5.2e-91
Identity = 172/242 (71.07%), Postives = 184/242 (76.03%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAF                          
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF-------------------------- 180

Query: 181 SKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
                   E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 --------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 205

Query: 241 IP 242
           IP
Sbjct: 241 IP 205

[Close]

BLAST of Cp4.1LG01g24340 vs. TAIR 10
Match: AT3G54890.4 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 322.0 bits (824), Expect = 4.1e-88
Identity = 160/199 (80.40%), Postives = 175/199 (87.94%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKNPEKLKEYKVKEIKNGR 199
           SK+P+KL+E KVKEIKNG+
Sbjct: 181 SKDPKKLEELKVKEIKNGK 196

[Close]

BLAST of Cp4.1LG01g24340 vs. TAIR 10
Match: AT3G54890.3 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-61
Identity = 117/151 (77.48%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLA 151
           WAA+PGGQATYLG PVPWGTLPTIL IEFLA
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLA 148

[Close]

BLAST of Cp4.1LG01g24340 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-38
Identity = 94/232 (40.52%), Postives = 125/232 (53.88%), Query Frame = 0


Query: 50  WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 109
           W PG   P +LDGS  GD+GFDP  LG+  E                             
Sbjct: 58  WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117

Query: 110 --------------NLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAAIPGG 169
                          ++RF+E ELIH RWAMLA  G L  E L    W  A +   + G 
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 177

Query: 170 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKNPEK 229
            ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + +PEK
Sbjct: 178 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 237

Query: 230 LKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 238
             + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g24340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12360	2.4e-117	84.15	Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q01667	5.0e-115	83.88	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9SDM1	1.2e-103	77.19	Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 ...	[more]
Q9SQL2	1.5e-37	40.68	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
Q07473	1.9e-37	40.52	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG01g24340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921712.1	1.23e-179	100.00	chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_...	[more]
XP_022990443.1	3.52e-179	99.59	chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita maxima]	[more]
KAG7033004.1	8.82e-177	97.23	Chlorophyll a-b binding protein 6A, chloroplastic [Cucurbita argyrosperma subsp....	[more]
XP_004143800.1	5.38e-174	96.75	chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus]	[more]
XP_008453995.1	1.09e-173	96.34	PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo] >KAA...	[more]

BLAST of Cp4.1LG01g24340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E190	5.95e-180	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JTA7	1.71e-179	99.59	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KNM4	2.61e-174	96.75	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7TXV7	5.26e-174	96.34	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BYE0	5.26e-174	96.34	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Cp4.1LG01g24340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54890.1	3.6e-116	83.88	photosystem I light harvesting complex gene 1	[more]
AT3G54890.2	5.2e-91	71.07	photosystem I light harvesting complex gene 1	[more]
AT3G54890.4	4.1e-88	80.40	photosystem I light harvesting complex gene 1	[more]
AT3G54890.3	4.3e-61	77.48	photosystem I light harvesting complex gene 1	[more]
AT5G01530.1	1.3e-38	40.52	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 51..237 e-value: 7.0E-80 score: 269.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 57..211 e-value: 8.9E-47 score: 159.6
None	No IPR available	PANTHER	PTHR21649:SF89	CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC	coord: 26..237
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 40..240
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 26..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g24340.1	Cp4.1LG01g24340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding