Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGACCTCGACACCACCGCGGCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGAGGAGGAGAAGAGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA
mRNA sequence
ATGCCGGACCTCGACACCACCGCGGCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGAGGAGGAGAAGAGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA
Coding sequence (CDS)
ATGCCGGACCTCGACACCACCGCGGCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGAGGAGGAGAAGAGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA
Protein sequence
MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKCHKNHHSALQNFAPTYSLNL
Homology
BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match:
XP_023551709.1 (uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 267 bits (683), Expect = 5.20e-90
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRL 60
MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRL
Sbjct: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRL 60
Query: 61 KKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
KKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC
Sbjct: 61 KKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
Query: 121 HKNHHSALQNFAPTYSLNL 139
HKNHHSALQNFAPTYSLNL
Sbjct: 121 HKNHHSALQNFAPTYSLNL 139
BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match:
XP_022990096.1 (uncharacterized protein LOC111487096 [Cucurbita maxima])
HSP 1 Score: 256 bits (655), Expect = 9.69e-86
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRL 60
MPDLDTTA PGKFRYRRLRYSEEFEEAFGRSR GEERRRRFVGRSKRWF+IRRASIGRRL
Sbjct: 1 MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60
Query: 61 KKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
KKLRVPSLRKLLRRKSRLVTAM+GSI+KVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC
Sbjct: 61 KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
Query: 121 HKNHHSALQNFAPTYSLNL 139
HKNHHSAL NFAPTYSLNL
Sbjct: 121 HKNHHSALPNFAPTYSLNL 139
BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match:
XP_022922294.1 (uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothetical protein SDJN02_07132, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 256 bits (653), Expect = 3.47e-85
Identity = 136/140 (97.14%), Postives = 136/140 (97.14%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGE-ERRRRFVGRSKRWFRIRRASIGRR 60
MPDLDTTA PGKFRYRRLRYSEEFEEAFGRSR GE RRRRFVGRSKRWFRIRRASIGRR
Sbjct: 17 MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76
Query: 61 LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 77 LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136
Query: 121 CHKNHHSALQNFAPTYSLNL 139
CHKNHHSALQNFAPTYSLNL
Sbjct: 137 CHKNHHSALQNFAPTYSLNL 156
BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match:
XP_038889218.1 (uncharacterized protein LOC120079105 [Benincasa hispida])
HSP 1 Score: 190 bits (482), Expect = 2.18e-59
Identity = 108/139 (77.70%), Postives = 118/139 (84.89%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRAS-IGRR 60
M DL+T A KFRYRRL YSEEFEEAFGR RGGE R + RSKRWFRIR+AS IGRR
Sbjct: 1 MADLETAPA-AKFRYRRLSYSEEFEEAFGRYRGGE----RILKRSKRWFRIRKASSIGRR 60
Query: 61 LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
LKKLR+PSLRKLLRRKS+LV AMRGSI+K++KRFR+GEAYLGDLFAGNYLFLQVNPSS+K
Sbjct: 61 LKKLRIPSLRKLLRRKSQLVNAMRGSISKILKRFRDGEAYLGDLFAGNYLFLQVNPSSMK 120
Query: 121 CHKNHHS-ALQNFAPTYSL 137
C KNHH LQNF TYSL
Sbjct: 121 CLKNHHRFPLQNFPQTYSL 134
BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match:
XP_016902323.1 (PREDICTED: uncharacterized protein LOC107991631 [Cucumis melo])
HSP 1 Score: 177 bits (448), Expect = 4.79e-54
Identity = 103/147 (70.07%), Postives = 115/147 (78.23%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRA------ 60
M DL+T +A GKFRYRRLRYSEEFEEAFGRSRGG R+ + WFR+R
Sbjct: 1 MADLETASA-GKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSL 60
Query: 61 SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVN 120
SIGRRLKKLR+PSLRKL+RRK RLV AMRGSIAKV+KRFR+GEAYLGDLFAGNYLFLQVN
Sbjct: 61 SIGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVN 120
Query: 121 PSSIKCHKNHHSA----LQNFAPTYSL 137
PSS+KC KNHH ++NF TYSL
Sbjct: 121 PSSMKCMKNHHQQHGFDVRNFTQTYSL 146
BLAST of Cp4.1LG01g23500 vs. ExPASy TrEMBL
Match:
A0A6J1JM01 (uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096 PE=4 SV=1)
HSP 1 Score: 256 bits (655), Expect = 4.69e-86
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRL 60
MPDLDTTA PGKFRYRRLRYSEEFEEAFGRSR GEERRRRFVGRSKRWF+IRRASIGRRL
Sbjct: 1 MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60
Query: 61 KKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
KKLRVPSLRKLLRRKSRLVTAM+GSI+KVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC
Sbjct: 61 KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
Query: 121 HKNHHSALQNFAPTYSLNL 139
HKNHHSAL NFAPTYSLNL
Sbjct: 121 HKNHHSALPNFAPTYSLNL 139
BLAST of Cp4.1LG01g23500 vs. ExPASy TrEMBL
Match:
A0A6J1E2Z5 (uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC111430312 PE=4 SV=1)
HSP 1 Score: 256 bits (653), Expect = 1.68e-85
Identity = 136/140 (97.14%), Postives = 136/140 (97.14%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGE-ERRRRFVGRSKRWFRIRRASIGRR 60
MPDLDTTA PGKFRYRRLRYSEEFEEAFGRSR GE RRRRFVGRSKRWFRIRRASIGRR
Sbjct: 17 MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76
Query: 61 LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 77 LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136
Query: 121 CHKNHHSALQNFAPTYSLNL 139
CHKNHHSALQNFAPTYSLNL
Sbjct: 137 CHKNHHSALQNFAPTYSLNL 156
BLAST of Cp4.1LG01g23500 vs. ExPASy TrEMBL
Match:
A0A1S4E272 (uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=4 SV=1)
HSP 1 Score: 177 bits (448), Expect = 2.32e-54
Identity = 103/147 (70.07%), Postives = 115/147 (78.23%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRA------ 60
M DL+T +A GKFRYRRLRYSEEFEEAFGRSRGG R+ + WFR+R
Sbjct: 1 MADLETASA-GKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSL 60
Query: 61 SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVN 120
SIGRRLKKLR+PSLRKL+RRK RLV AMRGSIAKV+KRFR+GEAYLGDLFAGNYLFLQVN
Sbjct: 61 SIGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVN 120
Query: 121 PSSIKCHKNHHSA----LQNFAPTYSL 137
PSS+KC KNHH ++NF TYSL
Sbjct: 121 PSSMKCMKNHHQQHGFDVRNFTQTYSL 146
BLAST of Cp4.1LG01g23500 vs. ExPASy TrEMBL
Match:
A0A0A0KSD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1)
HSP 1 Score: 177 bits (448), Expect = 2.64e-54
Identity = 109/152 (71.71%), Postives = 118/152 (77.63%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSR--GGEERRRRFVGRSKRWFRIRRA---- 60
M DL+T +A GKFRYRRLRYSEEFEEAFGRSR GGE R+R+ R + WFR+R
Sbjct: 1 MADLETASA-GKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWR-RRRWWFRMRMRKGSS 60
Query: 61 --SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQ 120
SIGRRLKKLR+PSLRKLLRRK RLV AMRGSIAKVVKRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 61 SLSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQ 120
Query: 121 VNPSSIKCHKNHHSALQ-------NFAPTYSL 137
VNPSS+KC KNHH Q NF TYSL
Sbjct: 121 VNPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150
BLAST of Cp4.1LG01g23500 vs. ExPASy TrEMBL
Match:
A0A6J1FMJ7 (uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC111445317 PE=4 SV=1)
HSP 1 Score: 167 bits (423), Expect = 4.67e-50
Identity = 99/138 (71.74%), Postives = 111/138 (80.43%), Query Frame = 0
Query: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRL 60
M DL+ +A KFRYRRLR+S+E E AF RSR GE+RR F G FR+RRASIGRRL
Sbjct: 53 MADLEIASA-AKFRYRRLRHSDELESAFARSRLGEQRR--FGG-----FRMRRASIGRRL 112
Query: 61 KKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
KKLR+PSLRKL R KSRLV AM GSI+KV+KRFR+GEAYLGDLFAGNYLFLQ+NPSSIKC
Sbjct: 113 KKLRIPSLRKLFR-KSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKC 172
Query: 121 HKNHHS-ALQNFAPTYSL 137
NHH LQNF PT+SL
Sbjct: 173 LANHHQYPLQNFPPTFSL 181
BLAST of Cp4.1LG01g23500 vs. TAIR 10
Match:
AT5G14410.1 (unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 0
Query: 34 GEERRRRFVGRSKRWFRIRRASIGRRLK-KLRVPSLRKLLRRKSRLVTAMRGSIAKVVKR 93
GE RRR S R+ R+ RR++ ++++ LR +R+K+ V + I K++KR
Sbjct: 23 GETTRRRSSFYSYRFKRVVSLGGRRRIRVRVKIRRLRGFVRKKANRV---KTGILKILKR 82
Query: 94 FREGEAYLGDLFAGNYLFLQVNPSSI 119
+E +++ GDLFAGNYLF+QVNPSS+
Sbjct: 83 LKESQSHFGDLFAGNYLFMQVNPSSL 105
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_023551709.1 | 5.20e-90 | 100.00 | uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022990096.1 | 9.69e-86 | 95.68 | uncharacterized protein LOC111487096 [Cucurbita maxima] | [more] |
| XP_022922294.1 | 3.47e-85 | 97.14 | uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothet... | [more] |
| XP_038889218.1 | 2.18e-59 | 77.70 | uncharacterized protein LOC120079105 [Benincasa hispida] | [more] |
| XP_016902323.1 | 4.79e-54 | 70.07 | PREDICTED: uncharacterized protein LOC107991631 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1JM01 | 4.69e-86 | 95.68 | uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096... | [more] |
| A0A6J1E2Z5 | 1.68e-85 | 97.14 | uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC1114303... | [more] |
| A0A1S4E272 | 2.32e-54 | 70.07 | uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=... | [more] |
| A0A0A0KSD1 | 2.64e-54 | 71.71 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1 | [more] |
| A0A6J1FMJ7 | 4.67e-50 | 71.74 | uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC1114453... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G14410.1 | 2.4e-08 | 41.86 | unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bact... | [more] |
