Cp4.1LG01g23320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g23320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cyclin-dependent protein kinase inhibitor SMR6-like
Location	Cp4.1LG01: 19601493 .. 19601807 (-)
RNA-Seq Expression	Cp4.1LG01g23320
Synteny	Cp4.1LG01g23320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTTCAAAGAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGACCAAAAAATGGGTAATCGCTGGCTTGCCGGCGAGGTCGTCGTTGAAGCAGATAAACACAAAACCGAAGGTGAAAGACGGCGATGACGACGGCGAGAGGTCGTGTTCGACGACGCCGACAGCGAAAGAAGCAAGAATACCGGAGAAACTGAGCTGTCCGCCGGCGCCGAGAAAGCGGAGATCTCGAAAATTAAGCTCGAATCAAAATCACGTGAGGGAGTTCTTCCAACCGTCGGATTTAGAATCCGTCTTCAAACTCCTAGTTTAG

mRNA sequence

ATGGGGTTTTCAAAGAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGACCAAAAAATGGGTAATCGCTGGCTTGCCGGCGAGGTCGTCGTTGAAGCAGATAAACACAAAACCGAAGGTGAAAGACGGCGATGACGACGGCGAGAGGTCGTGTTCGACGACGCCGACAGCGAAAGAAGCAAGAATACCGGAGAAACTGAGCTGTCCGCCGGCGCCGAGAAAGCGGAGATCTCGAAAATTAAGCTCGAATCAAAATCACGTGAGGGAGTTCTTCCAACCGTCGGATTTAGAATCCGTCTTCAAACTCCTAGTTTAG

Coding sequence (CDS)

ATGGGGTTTTCAAAGAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGACCAAAAAATGGGTAATCGCTGGCTTGCCGGCGAGGTCGTCGTTGAAGCAGATAAACACAAAACCGAAGGTGAAAGACGGCGATGACGACGGCGAGAGGTCGTGTTCGACGACGCCGACAGCGAAAGAAGCAAGAATACCGGAGAAACTGAGCTGTCCGCCGGCGCCGAGAAAGCGGAGATCTCGAAAATTAAGCTCGAATCAAAATCACGTGAGGGAGTTCTTCCAACCGTCGGATTTAGAATCCGTCTTCAAACTCCTAGTTTAG

Protein sequence

MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEARIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV

Homology

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.3e-23
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTK--------PKVKDGDDDGERSCS 60
           MGFSKKSQ +GG E++ KKWVIAG+  R+SLK + TK         +V++   + E  CS
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  TTPTAKEARIPEKLSCPPAPRKRRSRKLSSNQNHVREFF-QPSDLESVF 101
           TTPTAKE +IPE L CPPAPRKRR   L    N VREFF  PSDLE+VF
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRP-ALKCRSNVVREFFTPPSDLETVF 108

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy Swiss-Prot
Match: Q9SAD3 (Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 GN=SMR8 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-16
Identity = 49/104 (47.12%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 1   MGFSKK--SQIDGGFEAET--KKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPT 60
           MG+S K   Q+DG     T  KKWVIAG+P+RS LKQIN  P V   + + +  C TTPT
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 61  AKEARIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVF 101
           A   RIP    CP AP+KR+     S     R++F P DLE+VF
Sbjct: 61  AVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10
Identity = 47/105 (44.76%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 1   MGFSKKS--QIDGGFE--AETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPT 60
           MGFS K+  Q D  F    E KK VI G+   S++K I+         +D E  C TTPT
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTED-EDLCPTTPT 60

Query: 61  AKEARIPEKLSCPPAPRKRR-SRKLSSNQNHVREFFQPSDLESVF 101
           A   RIP  + CPPAP+KR+ + K+S      REFF P DLE+VF
Sbjct: 61  ADSVRIPTVIPCPPAPKKRKLTLKVSYGP---REFFSPPDLETVF 101

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy Swiss-Prot
Match: Q9LVX6 (Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 GN=SMR7 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MG SKKSQ+    + + KK++ A    R+SLK + T  K+   + + E     TPTA+ A
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKT--KLIKPERESEDGICITPTARGA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVF 101
           + PE   CP APRKR       N   +  F  PSD E VF
Sbjct: 61  KTPE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Cp4.1LG01g23320 vs. NCBI nr
Match: KAG7033096.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206 bits (525), Expect = 4.91e-67
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFSKKSQIDGGFEAE+KKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV
Sbjct: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104

[Close]

BLAST of Cp4.1LG01g23320 vs. NCBI nr
Match: XP_022991036.1 (cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima])

HSP 1 Score: 204 bits (520), Expect = 3.34e-66
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFS KSQIDGGFEAETKKWVIAG PARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA
Sbjct: 6   MGFSNKSQIDGGFEAETKKWVIAGFPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 65

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV
Sbjct: 66  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 109

[Close]

BLAST of Cp4.1LG01g23320 vs. NCBI nr
Match: KAG6602418.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (519), Expect = 4.04e-66
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFSKKSQIDGGFEAE+KKWVIAGLPARSSLKQINTKPKVKD DDDGERSCSTTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKQINTKPKVKDSDDDGERSCSTTPTAKEA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV
Sbjct: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104

[Close]

BLAST of Cp4.1LG01g23320 vs. NCBI nr
Match: XP_023550994.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169 bits (429), Expect = 2.16e-52
Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFSKKSQIDGGFE E KKWVIAGLPARSSLK I TK + KDGDDDGE+S STTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGDDDGEKSRSTTPTAKEA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKLSCP APRKRRS K SSNQNH REFF P DLESVFK+ V
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Cp4.1LG01g23320 vs. NCBI nr
Match: XP_022939509.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita moschata])

HSP 1 Score: 169 bits (427), Expect = 4.36e-52
Identity = 86/104 (82.69%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFSKKSQIDGGFE E KKWVIAGLPARSSLK I TKP+ KDG+DDGE+S STTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKPRAKDGEDDGEKSHSTTPTAKEA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKL CP APRKRRS K SSNQNH REFF P DLESVFK+ V
Sbjct: 61  RIPEKLICPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy TrEMBL
Match: A0A6J1JPL5 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111487749 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 1.62e-66
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFS KSQIDGGFEAETKKWVIAG PARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA
Sbjct: 6   MGFSNKSQIDGGFEAETKKWVIAGFPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 65

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV
Sbjct: 66  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 109

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy TrEMBL
Match: A0A6J1FHD8 (cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=LOC111445393 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 2.11e-52
Identity = 86/104 (82.69%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFSKKSQIDGGFE E KKWVIAGLPARSSLK I TKP+ KDG+DDGE+S STTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKPRAKDGEDDGEKSHSTTPTAKEA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKL CP APRKRRS K SSNQNH REFF P DLESVFK+ V
Sbjct: 61  RIPEKLICPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy TrEMBL
Match: A0A6J1JVL3 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111489273 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 1.00e-50
Identity = 85/104 (81.73%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFSKKSQIDGG EAE KKWVIAGLPARSSLK I+TK + KDG+DD E+S STTPTAKEA
Sbjct: 1   MGFSKKSQIDGGLEAEGKKWVIAGLPARSSLKPISTKSRAKDGEDDCEKSRSTTPTAKEA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKLSCP APRKRRS K SSNQNH REFF P DLESVFK+ V
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy TrEMBL
Match: A0A5D3BY33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00180 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 3.47e-48
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFSKKSQID GFEAE KKWVIAGL ARSSLK INTK K K+G++DGE+    TPT KEA
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEK----TPTGKEA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKL CPPAPRKRRS K SSNQNH+REFF P DLESVFKL V
Sbjct: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Cp4.1LG01g23320 vs. ExPASy TrEMBL
Match: A0A1S3C883 (uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 3.47e-48
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MGFSKKSQID GFEAE KKWVIAGL ARSSLK INTK K K+G++DGE+    TPT KEA
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEK----TPTGKEA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 104
           RIPEKL CPPAPRKRRS K SSNQNH+REFF P DLESVFKL V
Sbjct: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Cp4.1LG01g23320 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-24
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTK--------PKVKDGDDDGERSCS 60
           MGFSKKSQ +GG E++ KKWVIAG+  R+SLK + TK         +V++   + E  CS
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  TTPTAKEARIPEKLSCPPAPRKRRSRKLSSNQNHVREFF-QPSDLESVF 101
           TTPTAKE +IPE L CPPAPRKRR   L    N VREFF  PSDLE+VF
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRP-ALKCRSNVVREFFTPPSDLETVF 108

[Close]

BLAST of Cp4.1LG01g23320 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-17
Identity = 49/104 (47.12%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 1   MGFSKK--SQIDGGFEAET--KKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPT 60
           MG+S K   Q+DG     T  KKWVIAG+P+RS LKQIN  P V   + + +  C TTPT
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 61  AKEARIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVF 101
           A   RIP    CP AP+KR+     S     R++F P DLE+VF
Sbjct: 61  AVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Cp4.1LG01g23320 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 47/105 (44.76%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 1   MGFSKKS--QIDGGFE--AETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPT 60
           MGFS K+  Q D  F    E KK VI G+   S++K I+         +D E  C TTPT
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTED-EDLCPTTPT 60

Query: 61  AKEARIPEKLSCPPAPRKRR-SRKLSSNQNHVREFFQPSDLESVF 101
           A   RIP  + CPPAP+KR+ + K+S      REFF P DLE+VF
Sbjct: 61  ADSVRIPTVIPCPPAPKKRKLTLKVSYGP---REFFSPPDLETVF 101

[Close]

BLAST of Cp4.1LG01g23320 vs. TAIR 10
Match: AT3G27630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40460.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 9.5e-10
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAETKKWVIAGLPARSSLKQINTKPKVKDGDDDGERSCSTTPTAKEA 60
           MG SKKSQ+    + + KK++ A    R+SLK + T  K+   + + E     TPTA+ A
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKT--KLIKPERESEDGICITPTARGA 60

Query: 61  RIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVF 101
           + PE   CP APRKR       N   +  F  PSD E VF
Sbjct: 61  KTPE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Cp4.1LG01g23320 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 54  TPTAKEARIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVF 101
           TP AK++RIPE L+CPPAP+K+R  K    +     FF P ++E  F
Sbjct: 56  TPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g23320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q29Q81	4.3e-23	56.88	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SAD3	6.6e-16	47.12	Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	1.9e-10	44.76	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LVX6	1.3e-08	39.00	Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cp4.1LG01g23320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033096.1	4.91e-67	99.04	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]
XP_022991036.1	3.34e-66	98.08	cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima]	[more]
KAG6602418.1	4.04e-66	98.08	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]
XP_023550994.1	2.16e-52	83.65	cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo]	[more]
XP_022939509.1	4.36e-52	82.69	cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG01g23320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPL5	1.62e-66	98.08	cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1FHD8	2.11e-52	82.69	cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JVL3	1.00e-50	81.73	cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A5D3BY33	3.47e-48	78.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C883	3.47e-48	78.85	uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=...	[more]

BLAST of Cp4.1LG01g23320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40460.1	3.0e-24	56.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G10690.1	4.7e-17	47.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60783.1	1.3e-11	44.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G27630.1	9.5e-10	39.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G20898.1	1.2e-04	46.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..86
None	No IPR available	PANTHER	PTHR33142:SF40	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR6-RELATED	coord: 1..102
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g23320.1	Cp4.1LG01g23320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus