Cp4.1LG01g22850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCACCGGGTGCGGCGAGGGCGAGAATTCAGCGGCTATGATCGAGTTTGTGGGGAGTTCAAGCTCTTGTGAGAGAGAGTGGAAGGAAGAGGGATTTGGAAACTCAAGCCAATTACCAGAATACAAGGAGGGTTTTGAGAATTCAATGTCGTTTACATCTCATGATATGACATTATCCATTGAAGCAACATGGACAGCTGAATCTTTAAGAACAAAAGAAGCCATTGCTGAAGAAGGCTTCACTAATCTTCTTCTAAACAACAAAGTTGAAAGAAGCCAATCTGAAGGAGGAGGTGGTGGTGGTGGTGAGGACTCTGAAAATGGAAGTGGGAGTGCAGCAAGTGATTACTATGAAGATAACAAGAATTACTGGAATAGCATTCTTAATTTGGTAAATTCTTCTCCCTCTAATTCTTCCATTTTCTAA ATGGCCACCGGGTGCGGCGAGGGCGAGAATTCAGCGGCTATGATCGAGTTTGTGGGGAGTTCAAGCTCTTGTGAGAGAGAGTGGAAGGAAGAGGGATTTGGAAACTCAAGCCAATTACCAGAATACAAGGAGGGTTTTGAGAATTCAATGTCGTTTACATCTCATGATATGACATTATCCATTGAAGCAACATGGACAGCTGAATCTTTAAGAACAAAAGAAGCCATTGCTGAAGAAGGCTTCACTAATCTTCTTCTAAACAACAAAGTTGAAAGAAGCCAATCTGAAGGAGGAGGTGGTGGTGGTGGTGAGGACTCTGAAAATGGAAGTGGGAGTGCAGCAAGTGATTACTATGAAGATAACAAGAATTACTGGAATAGCATTCTTAATTTGGTAAATTCTTCTCCCTCTAATTCTTCCATTTTCTAA ATGGCCACCGGGTGCGGCGAGGGCGAGAATTCAGCGGCTATGATCGAGTTTGTGGGGAGTTCAAGCTCTTGTGAGAGAGAGTGGAAGGAAGAGGGATTTGGAAACTCAAGCCAATTACCAGAATACAAGGAGGGTTTTGAGAATTCAATGTCGTTTACATCTCATGATATGACATTATCCATTGAAGCAACATGGACAGCTGAATCTTTAAGAACAAAAGAAGCCATTGCTGAAGAAGGCTTCACTAATCTTCTTCTAAACAACAAAGTTGAAAGAAGCCAATCTGAAGGAGGAGGTGGTGGTGGTGGTGAGGACTCTGAAAATGGAAGTGGGAGTGCAGCAAGTGATTACTATGAAGATAACAAGAATTACTGGAATAGCATTCTTAATTTGGTAAATTCTTCTCCCTCTAATTCTTCCATTTTCTAA MATGCGEGENSAAMIEFVGSSSSCEREWKEEGFGNSSQLPEYKEGFENSMSFTSHDMTLSIEATWTAESLRTKEAIAEEGFTNLLLNNKVERSQSEGGGGGGGEDSENGSGSAASDYYEDNKNYWNSILNLVNSSPSNSSIF Homology
BLAST of Cp4.1LG01g22850 vs. ExPASy Swiss-Prot
Match: Q9LE63 (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.8e-06 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. ExPASy Swiss-Prot
Match: Q9LXF1 (Transcription factor MYB16 OS=Arabidopsis thaliana OX=3702 GN=MYB16 PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.7e-04 Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. NCBI nr
Match: XP_023544429.1 (transcription factor MYB106-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 271 bits (693), Expect = 9.15e-88 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. NCBI nr
Match: KAG7033181.1 (Transcription factor MYB16 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 266 bits (681), Expect = 4.58e-87 Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. NCBI nr
Match: KAG6602508.1 (Transcription factor MYB106, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 266 bits (681), Expect = 1.34e-84 Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. NCBI nr
Match: XP_022989899.1 (transcription factor MYB106-like [Cucurbita maxima]) HSP 1 Score: 263 bits (672), Expect = 3.63e-84 Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. NCBI nr
Match: XP_022921395.1 (transcription factor MYB106-like [Cucurbita moschata]) HSP 1 Score: 261 bits (667), Expect = 7.13e-84 Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. ExPASy TrEMBL
Match: A0A6J1JQM6 (transcription factor MYB106-like OS=Cucurbita maxima OX=3661 GN=LOC111486949 PE=4 SV=1) HSP 1 Score: 263 bits (672), Expect = 1.76e-84 Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. ExPASy TrEMBL
Match: A0A6J1E5I7 (transcription factor MYB106-like OS=Cucurbita moschata OX=3662 GN=LOC111429684 PE=4 SV=1) HSP 1 Score: 261 bits (667), Expect = 3.45e-84 Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. ExPASy TrEMBL
Match: A0A6J1FGF1 (transcription factor MYB106-like OS=Cucurbita moschata OX=3662 GN=LOC111445184 PE=4 SV=1) HSP 1 Score: 202 bits (513), Expect = 5.79e-61 Identity = 115/145 (79.31%), Postives = 122/145 (84.14%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. ExPASy TrEMBL
Match: A0A6J1JTC2 (transcription factor MYB106-like OS=Cucurbita maxima OX=3661 GN=LOC111489556 PE=4 SV=1) HSP 1 Score: 200 bits (508), Expect = 3.25e-60 Identity = 114/145 (78.62%), Postives = 121/145 (83.45%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. ExPASy TrEMBL
Match: A0A6J1BYC3 (transcription factor MYB16-like OS=Momordica charantia OX=3673 GN=LOC111006697 PE=4 SV=1) HSP 1 Score: 187 bits (475), Expect = 3.93e-55 Identity = 112/159 (70.44%), Postives = 121/159 (76.10%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. TAIR 10
Match: AT3G01140.1 (myb domain protein 106 ) HSP 1 Score: 52.8 bits (125), Expect = 2.7e-07 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. TAIR 10
Match: AT5G15310.1 (myb domain protein 16 ) HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05 Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 0
BLAST of Cp4.1LG01g22850 vs. TAIR 10
Match: AT5G15310.2 (myb domain protein 16 ) HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05 Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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