Cp4.1LG01g22650 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g22650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosomal protein L34e superfamily protein
Location	Cp4.1LG01: 20007562 .. 20008239 (-)
RNA-Seq Expression	Cp4.1LG01g22650
Synteny	Cp4.1LG01g22650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTATTTCCCATACTCAATCTCGGTCTGCAAGTCCGTTGACCAACCTACCGTCATGGCGAGTTCAGTGAATTTATCCGATCCAAGTTCCAAATCAAGGAACAGGAAGATGACTGTCTCATCGACTTGTTCGAAATTCCCCGTTTGTCATAGGTCTCGATCGGCCGTCATCGATGTTGTGATTTTGATCGCTGTGGTTGGTGCTTGTGGGGTTTTGTTATTCCCCTATATGAAGCTTGTAATCGTTGAATTCCTTGATATTTTCGGCGCGATTCTGTATTTAATGGGGGAGGAAGTCTCTCGTGCTCCTTGGATTTATGGATCCATTGGACTTAGCATTTTCTGTGCTTCATTAGCTGCCTGGGTTGTTTTAATTTGCACGAACAGGAAATGTGGAAATCCTTATTGCAAGGGTCTTCGAAAGGCAGCTGAATTCGATATCCAATTGGAGACAGAGGAGTGTGTGAAGAACTCTAGTCCATTAGTTAAAAATGGAGTGAAGAAAGGGCTGTTTGAATTGCCCCGTGACCATCACCGCGAATTAGAAGCTGAACTTAAGAAGATGGCACCTCCTAATGGAAGAGCTGTGCTCATATTTCGAGCTAGATGTGGCTGTTCTGTTGGTCGATTGGAAGTTCCTGGGCCTAGGAAGCAGCTGAAGAAAATCAAGAAATAG

mRNA sequence

ATGGTCTATTTCCCATACTCAATCTCGGTCTGCAAGTCCGTTGACCAACCTACCGTCATGGCGAGTTCAGTGAATTTATCCGATCCAAGTTCCAAATCAAGGAACAGGAAGATGACTGTCTCATCGACTTGTTCGAAATTCCCCGTTTGTCATAGGTCTCGATCGGCCGTCATCGATGTTGTGATTTTGATCGCTGTGGTTGGTGCTTGTGGGGTTTTGTTATTCCCCTATATGAAGCTTGTAATCGTTGAATTCCTTGATATTTTCGGCGCGATTCTGTATTTAATGGGGGAGGAAGTCTCTCGTGCTCCTTGGATTTATGGATCCATTGGACTTAGCATTTTCTGTGCTTCATTAGCTGCCTGGGTTGTTTTAATTTGCACGAACAGGAAATGTGGAAATCCTTATTGCAAGGGTCTTCGAAAGGCAGCTGAATTCGATATCCAATTGGAGACAGAGGAGTGTGTGAAGAACTCTAGTCCATTAGTTAAAAATGGAGTGAAGAAAGGGCTGTTTGAATTGCCCCGTGACCATCACCGCGAATTAGAAGCTGAACTTAAGAAGATGGCACCTCCTAATGGAAGAGCTGTGCTCATATTTCGAGCTAGATGTGGCTGTTCTGTTGGTCGATTGGAAGTTCCTGGGCCTAGGAAGCAGCTGAAGAAAATCAAGAAATAG

Coding sequence (CDS)

ATGGTCTATTTCCCATACTCAATCTCGGTCTGCAAGTCCGTTGACCAACCTACCGTCATGGCGAGTTCAGTGAATTTATCCGATCCAAGTTCCAAATCAAGGAACAGGAAGATGACTGTCTCATCGACTTGTTCGAAATTCCCCGTTTGTCATAGGTCTCGATCGGCCGTCATCGATGTTGTGATTTTGATCGCTGTGGTTGGTGCTTGTGGGGTTTTGTTATTCCCCTATATGAAGCTTGTAATCGTTGAATTCCTTGATATTTTCGGCGCGATTCTGTATTTAATGGGGGAGGAAGTCTCTCGTGCTCCTTGGATTTATGGATCCATTGGACTTAGCATTTTCTGTGCTTCATTAGCTGCCTGGGTTGTTTTAATTTGCACGAACAGGAAATGTGGAAATCCTTATTGCAAGGGTCTTCGAAAGGCAGCTGAATTCGATATCCAATTGGAGACAGAGGAGTGTGTGAAGAACTCTAGTCCATTAGTTAAAAATGGAGTGAAGAAAGGGCTGTTTGAATTGCCCCGTGACCATCACCGCGAATTAGAAGCTGAACTTAAGAAGATGGCACCTCCTAATGGAAGAGCTGTGCTCATATTTCGAGCTAGATGTGGCTGTTCTGTTGGTCGATTGGAAGTTCCTGGGCCTAGGAAGCAGCTGAAGAAAATCAAGAAATAG

Protein sequence

MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDVVILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLAAWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK

Homology

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BLAST of Cp4.1LG01g22650 vs. ExPASy Swiss-Prot
Match: P0C8Q9 (Uncharacterized protein At5g19025 OS=Arabidopsis thaliana OX=3702 GN=At5g19025 PE=2 SV=3)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 77/236 (32.63%), Postives = 117/236 (49.58%), Query Frame = 0


Query: 18  TVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDVVILIAVVGACGVLLFPY 77
           T +  +     PSS+S   +    ++ S   +C  S SA +D++ILI V+ +   LL  Y
Sbjct: 15  TAVEDNSTTMPPSSRSAANQ----NSSSSLHLCKHSPSATLDLLILILVLFSGTFLLSSY 74

Query: 78  MKLVI--------------VEFLDIFGAILYLMGEEVSR------------APWIYGSIG 137
              +I              +    +   ++     + S              P       
Sbjct: 75  FSYLIHSLSLLSSHFPSITISLSSLLPPLIIFFSSDHSTEDEDHHHPSGKIPPPASFFFA 134

Query: 138 LSIFCASLAAWVVLIC--TNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVK- 197
            ++F A+  A++ L C   +RKC NP CKG++KA EFD+QL+TEECVK+ S    + +  
Sbjct: 135 FAVFFAASIAFLDLCCGSRSRKCRNPKCKGMKKAMEFDLQLQTEECVKSGSVKEIDRLPW 194

Query: 198 KGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIK 225
           KG  E   D+   L AEL+KMAP NGRAVLIFR++CGC + +LE  GP++  +  K
Sbjct: 195 KGGSESNPDYEC-LRAELRKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245

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BLAST of Cp4.1LG01g22650 vs. NCBI nr
Match: XP_022955151.1 (uncharacterized protein At5g19025-like [Cucurbita moschata] >XP_023518957.1 uncharacterized protein At5g19025-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443 bits (1140), Expect = 7.36e-157
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR
Sbjct: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

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BLAST of Cp4.1LG01g22650 vs. NCBI nr
Match: KAG6602499.1 (hypothetical protein SDJN03_07732, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 442 bits (1137), Expect = 2.11e-156
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR
Sbjct: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAEL+KMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELRKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

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BLAST of Cp4.1LG01g22650 vs. NCBI nr
Match: XP_022989829.1 (uncharacterized protein At5g19025-like [Cucurbita maxima])

HSP 1 Score: 442 bits (1136), Expect = 3.00e-156
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVK+GLFELPRDHHR
Sbjct: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKEGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

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BLAST of Cp4.1LG01g22650 vs. NCBI nr
Match: XP_004148702.1 (uncharacterized protein At5g19025 [Cucumis sativus])

HSP 1 Score: 426 bits (1096), Expect = 3.76e-150
Identity = 215/225 (95.56%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNL+D SSKSRN+KMT SSTCSKFPVCHRSRSAVID+
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLADSSSKSRNKKMTASSTCSKFPVCHRSRSAVIDI 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACG LLFPYMKLVIVE L+IFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICT+RKCGNPYCKGLRKAAEFDIQLETEECVKNS+PLVKNGVKKGLFELPRDHHR
Sbjct: 121 AWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVKNSTPLVKNGVKKGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

[Close]

BLAST of Cp4.1LG01g22650 vs. NCBI nr
Match: XP_038889495.1 (uncharacterized protein At5g19025 [Benincasa hispida])

HSP 1 Score: 424 bits (1089), Expect = 4.39e-149
Identity = 212/225 (94.22%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVN++D SSKSRN+KMT SSTCSKFPVCHRSRSAVID+
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNIADSSSKSRNKKMTASSTCSKFPVCHRSRSAVIDI 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACG LLFPYMKLVIVE L+IFGAILYLMGEEVSRAPW+YGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMGEEVSRAPWVYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICT+RKCGNP+CKGLRKAAEFDIQLETEECVKNS+PLVKNGVKKGLFELPRDHHR
Sbjct: 121 AWVVLICTSRKCGNPFCKGLRKAAEFDIQLETEECVKNSTPLVKNGVKKGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

[Close]

BLAST of Cp4.1LG01g22650 vs. ExPASy TrEMBL
Match: A0A6J1GSY8 (uncharacterized protein At5g19025-like OS=Cucurbita moschata OX=3662 GN=LOC111457202 PE=4 SV=1)

HSP 1 Score: 443 bits (1140), Expect = 3.57e-157
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR
Sbjct: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

[Close]

BLAST of Cp4.1LG01g22650 vs. ExPASy TrEMBL
Match: A0A6J1JQG5 (uncharacterized protein At5g19025-like OS=Cucurbita maxima OX=3661 GN=LOC111486899 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 1.45e-156
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVK+GLFELPRDHHR
Sbjct: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKEGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

[Close]

BLAST of Cp4.1LG01g22650 vs. ExPASy TrEMBL
Match: A0A0A0KVL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636590 PE=4 SV=1)

HSP 1 Score: 426 bits (1096), Expect = 1.82e-150
Identity = 215/225 (95.56%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNL+D SSKSRN+KMT SSTCSKFPVCHRSRSAVID+
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLADSSSKSRNKKMTASSTCSKFPVCHRSRSAVIDI 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACG LLFPYMKLVIVE L+IFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICT+RKCGNPYCKGLRKAAEFDIQLETEECVKNS+PLVKNGVKKGLFELPRDHHR
Sbjct: 121 AWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVKNSTPLVKNGVKKGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

[Close]

BLAST of Cp4.1LG01g22650 vs. ExPASy TrEMBL
Match: A0A5D3CWE1 (Putative Ribosomal protein L34e superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00180 PE=4 SV=1)

HSP 1 Score: 423 bits (1087), Expect = 4.29e-149
Identity = 213/225 (94.67%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNL+D SSKSRN++M  SSTCSKFPVCHRSRSAVID+
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLADSSSKSRNKRMPASSTCSKFPVCHRSRSAVIDI 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACG LLFPYMKLVIVE L+IFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICT+RKCGNPYCKGLRKAAEFDIQLETEECVKNS+PLVKNGVKKGLFELPRDHHR
Sbjct: 121 AWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVKNSTPLVKNGVKKGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

[Close]

BLAST of Cp4.1LG01g22650 vs. ExPASy TrEMBL
Match: A0A1S3CAF3 (uncharacterized protein At5g19025 OS=Cucumis melo OX=3656 GN=LOC103498491 PE=4 SV=1)

HSP 1 Score: 423 bits (1087), Expect = 4.29e-149
Identity = 213/225 (94.67%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVYFPYSISVCKSVDQPTVMASSVNL+D SSKSRN++M  SSTCSKFPVCHRSRSAVID+
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLADSSSKSRNKRMPASSTCSKFPVCHRSRSAVIDI 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAVVGACG LLFPYMKLVIVE L+IFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA
Sbjct: 61  VILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120

Query: 121 AWVVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHHR 180
           AWVVLICT+RKCGNPYCKGLRKAAEFDIQLETEECVKNS+PLVKNGVKKGLFELPRDHHR
Sbjct: 121 AWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVKNSTPLVKNGVKKGLFELPRDHHR 180

Query: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225
           ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK
Sbjct: 181 ELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

[Close]

BLAST of Cp4.1LG01g22650 vs. TAIR 10
Match: AT3G01170.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 262.7 bits (670), Expect = 2.7e-70
Identity = 138/226 (61.06%), Postives = 172/226 (76.11%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDV 60
           MVY   SISVC SVD P +M+     S P S++   K + S TCSKFPVC  S+SA IDV
Sbjct: 1   MVYLHSSISVCNSVD-PMIMSH----SSPKSRNTRNKSSSSPTCSKFPVCDGSQSAAIDV 60

Query: 61  VILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLA 120
           VILIAV+ ACG L FPY+KL+ ++ +++F  +  L+ +E+ + P +YGS+ LSIFCA+++
Sbjct: 61  VILIAVITACGFLFFPYVKLITLKSIEVFSDLSLLVKQEILQNPIVYGSLALSIFCAAIS 120

Query: 121 AW-VVLICTNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELPRDHH 180
            W V+L+CT ++CG P CKGLRKA EFDIQLETEECVK+SS       K+G+FELPR HH
Sbjct: 121 TWLVILLCTMQRCGKPNCKGLRKAVEFDIQLETEECVKSSSN------KRGMFELPRVHH 180

Query: 181 RELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 226
           RELEAELKKMAPPNGRAVL+FRARCGCSV RL V GP+KQ +KIKK
Sbjct: 181 RELEAELKKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQQRKIKK 215

[Close]

BLAST of Cp4.1LG01g22650 vs. TAIR 10
Match: AT5G15260.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.9e-63
Identity = 141/238 (59.24%), Postives = 174/238 (73.11%), Query Frame = 0


Query: 1   MVYFPYSISVCKSVDQPTVMASSVNLSDPSSKSR----NRKMTVSSTCSKFPV-CHRSRS 60
           MVYF  SIS+   VDQ  +MA S +    S +SR    NRK + SS  S F V C  SRS
Sbjct: 1   MVYFQNSISL---VDQSPIMAHSPDFHHHSKQSRTSSSNRKSSSSSCSSNFSVCCDGSRS 60

Query: 61  AVIDVVILIAVVGACGVLLFPYMKLVIVEFLDIFGAILYLMGEEVSR--APWIYGSIGLS 120
           A IDVVILIAV+ + G L+FPY+K + ++ ++IF  +  L+ EE+ R   P +YG I LS
Sbjct: 61  AAIDVVILIAVITSSGFLIFPYIKFITIKSVEIFSELSCLVKEEILRNPDPIVYGLIALS 120

Query: 121 IFCASLAAW--VVLICTNRKCGNPYCKGLRKA-AEFDIQLETEECVKNSSPLVKNGVKKG 180
           I C +L+AW  V+L+C+  +CG P CKGLRKA AEFDIQLETE+CVK+S+   K+  KKG
Sbjct: 121 ISCTALSAWMIVILLCSRHRCGKPNCKGLRKANAEFDIQLETEDCVKSSNS-GKSVSKKG 180

Query: 181 LFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRK---QLKKIKK 226
           LFELPRDHHRELEAELKKMAPPNGRAVL+FRA+CGCSVGRLEVPGP+K   Q +K+KK
Sbjct: 181 LFELPRDHHRELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKKQQLQQRKVKK 234

[Close]

BLAST of Cp4.1LG01g22650 vs. TAIR 10
Match: AT3G06180.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-27
Identity = 81/216 (37.50%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 22  SSVNLSDPSS----KSRNRKMTVSSTCSKFPVCHRSRSAVIDVVILIAVVGACGVLLFPY 81
           S+ N   PSS     + N   + SS+ S   +C  S SA +D++ILI V+ +   LL  Y
Sbjct: 13  STTNSMPPSSSASRSASNHSSSSSSSSSSLHLCKHSPSATLDLLILILVLFSGAFLLSSY 72

Query: 82  MKLVIVEF------LDIFGAILYLMGEEVSRAPWIYGSIGLSIFCASLAAWVVLIC--TN 141
              +   F           ++++   E++S  P        ++F A+  A++ L C   +
Sbjct: 73  FSYLFHSFSLLSSHFPSLSSLIFSDDEDLSSIPPASYFFAFAVFFAASIAFLDLCCGPRS 132

Query: 142 RKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVKKGLFELP-------RDHHREL 201
           RKC NP CKGL+KA EFD+QL+TEEC       VK+G  K +  LP          +  L
Sbjct: 133 RKCRNPKCKGLKKAMEFDLQLQTEEC-------VKSGATKEIDRLPWKGGSESNPDYECL 192

Query: 202 EAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRK 219
            AEL++MAPPNGRAVL+FR+RCGC V +LE  GP++
Sbjct: 193 RAELRRMAPPNGRAVLLFRSRCGCPVAKLEGWGPKR 221

[Close]

BLAST of Cp4.1LG01g22650 vs. TAIR 10
Match: AT5G19025.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 8.9e-21
Identity = 77/236 (32.63%), Postives = 117/236 (49.58%), Query Frame = 0


Query: 18  TVMASSVNLSDPSSKSRNRKMTVSSTCSKFPVCHRSRSAVIDVVILIAVVGACGVLLFPY 77
           T +  +     PSS+S   +    ++ S   +C  S SA +D++ILI V+ +   LL  Y
Sbjct: 15  TAVEDNSTTMPPSSRSAANQ----NSSSSLHLCKHSPSATLDLLILILVLFSGTFLLSSY 74

Query: 78  MKLVI--------------VEFLDIFGAILYLMGEEVSR------------APWIYGSIG 137
              +I              +    +   ++     + S              P       
Sbjct: 75  FSYLIHSLSLLSSHFPSITISLSSLLPPLIIFFSSDHSTEDEDHHHPSGKIPPPASFFFA 134

Query: 138 LSIFCASLAAWVVLIC--TNRKCGNPYCKGLRKAAEFDIQLETEECVKNSSPLVKNGVK- 197
            ++F A+  A++ L C   +RKC NP CKG++KA EFD+QL+TEECVK+ S    + +  
Sbjct: 135 FAVFFAASIAFLDLCCGSRSRKCRNPKCKGMKKAMEFDLQLQTEECVKSGSVKEIDRLPW 194

Query: 198 KGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIK 225
           KG  E   D+   L AEL+KMAP NGRAVLIFR++CGC + +LE  GP++  +  K
Sbjct: 195 KGGSESNPDYEC-LRAELRKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g22650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C8Q9	1.2e-19	32.63	Uncharacterized protein At5g19025 OS=Arabidopsis thaliana OX=3702 GN=At5g19025 P...	[more]

BLAST of Cp4.1LG01g22650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955151.1	7.36e-157	100.00	uncharacterized protein At5g19025-like [Cucurbita moschata] >XP_023518957.1 unch...	[more]
KAG6602499.1	2.11e-156	99.56	hypothetical protein SDJN03_07732, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022989829.1	3.00e-156	99.56	uncharacterized protein At5g19025-like [Cucurbita maxima]	[more]
XP_004148702.1	3.76e-150	95.56	uncharacterized protein At5g19025 [Cucumis sativus]	[more]
XP_038889495.1	4.39e-149	94.22	uncharacterized protein At5g19025 [Benincasa hispida]	[more]

BLAST of Cp4.1LG01g22650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSY8	3.57e-157	100.00	uncharacterized protein At5g19025-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1JQG5	1.45e-156	99.56	uncharacterized protein At5g19025-like OS=Cucurbita maxima OX=3661 GN=LOC1114868...	[more]
A0A0A0KVL2	1.82e-150	95.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636590 PE=4 SV=1	[more]
A0A5D3CWE1	4.29e-149	94.67	Putative Ribosomal protein L34e superfamily protein OS=Cucumis melo var. makuwa ...	[more]
A0A1S3CAF3	4.29e-149	94.67	uncharacterized protein At5g19025 OS=Cucumis melo OX=3656 GN=LOC103498491 PE=4 S...	[more]

BLAST of Cp4.1LG01g22650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01170.1	2.7e-70	61.06	Ribosomal protein L34e superfamily protein	[more]
AT5G15260.1	1.9e-63	59.24	Ribosomal protein L34e superfamily protein	[more]
AT3G06180.1	2.2e-27	37.50	Ribosomal protein L34e superfamily protein	[more]
AT5G19025.1	8.9e-21	32.63	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46996:SF4	BNAC09G54710D PROTEIN	coord: 1..225
None	No IPR available	PANTHER	PTHR46996	OS05G0488500 PROTEIN	coord: 1..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g22650.1	Cp4.1LG01g22650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane