Cp4.1LG01g22460 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g22460
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor MYB59-like
Location	Cp4.1LG01: 20224275 .. 20224559 (+)
RNA-Seq Expression	Cp4.1LG01g22460
Synteny	Cp4.1LG01g22460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCACAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATATGAAAGAGACAATGATGAATTAGGGATGGTTTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACTTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAA

mRNA sequence

ATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCACAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATATGAAAGAGACAATGATGAATTAGGGATGGTTTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACTTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAA

Coding sequence (CDS)

ATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCACAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATATGAAAGAGACAATGATGAATTAGGGATGGTTTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACTTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAA

Protein sequence

MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL

Homology

[Close]

BLAST of Cp4.1LG01g22460 vs. NCBI nr
Match: XP_023554284.1 (transcription factor MYB59-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188 bits (478), Expect = 1.17e-58
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1   MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSY 60
           MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSY
Sbjct: 111 MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSY 170

Query: 61  LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 94
           LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 171 LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of Cp4.1LG01g22460 vs. NCBI nr
Match: XP_022954581.1 (transcription factor MYB59-like [Cucurbita moschata])

HSP 1 Score: 181 bits (458), Expect = 1.29e-55
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1   MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSY 60
           MKPKREAQMVVP+PDNKTSPPISFEQDREEKDMMKP  RDNDELGMVFTEPAAMAADQSY
Sbjct: 111 MKPKREAQMVVPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSY 170

Query: 61  LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 94
           LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 171 LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of Cp4.1LG01g22460 vs. NCBI nr
Match: KAG6602540.1 (Transcription factor MYB59, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180 bits (456), Expect = 2.59e-55
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1   MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSY 60
           MKPKREAQMVVP+PD KTSPPISFEQDREEKDMMKP ERDNDELGMVFTEPAAMAADQSY
Sbjct: 111 MKPKREAQMVVPKPDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSY 170

Query: 61  LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 94
           LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 171 LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of Cp4.1LG01g22460 vs. NCBI nr
Match: XP_022990755.1 (transcription factor MYB59-like [Cucurbita maxima])

HSP 1 Score: 173 bits (439), Expect = 9.92e-53
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1   MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSY 60
           MKPKREAQMVVP+PDNKTS PISFEQDREEKDMMK  ERDN ELGMVFTEPAAMAADQSY
Sbjct: 111 MKPKREAQMVVPKPDNKTSAPISFEQDREEKDMMKLCERDNAELGMVFTEPAAMAADQSY 170

Query: 61  LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 94
           LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 171 LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of Cp4.1LG01g22460 vs. NCBI nr
Match: KAG7033217.1 (Transcription factor MYB23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (392), Expect = 9.71e-47
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 15  DNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAA 74
           D KTSPPISFEQDREEKDMMKP ERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAA
Sbjct: 39  DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAA 98

Query: 75  AAAEESYLWGGLWEDSNNLL 94
           AAAEESYLWGGLWEDSNNLL
Sbjct: 99  AAAEESYLWGGLWEDSNNLL 118

[Close]

BLAST of Cp4.1LG01g22460 vs. ExPASy TrEMBL
Match: A0A6J1GRA0 (transcription factor MYB59-like OS=Cucurbita moschata OX=3662 GN=LOC111456806 PE=4 SV=1)

HSP 1 Score: 181 bits (458), Expect = 6.24e-56
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1   MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSY 60
           MKPKREAQMVVP+PDNKTSPPISFEQDREEKDMMKP  RDNDELGMVFTEPAAMAADQSY
Sbjct: 111 MKPKREAQMVVPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSY 170

Query: 61  LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 94
           LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 171 LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of Cp4.1LG01g22460 vs. ExPASy TrEMBL
Match: A0A6J1JQZ1 (transcription factor MYB59-like OS=Cucurbita maxima OX=3661 GN=LOC111487542 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 4.80e-53
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1   MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSY 60
           MKPKREAQMVVP+PDNKTS PISFEQDREEKDMMK  ERDN ELGMVFTEPAAMAADQSY
Sbjct: 111 MKPKREAQMVVPKPDNKTSAPISFEQDREEKDMMKLCERDNAELGMVFTEPAAMAADQSY 170

Query: 61  LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 94
           LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 171 LSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of Cp4.1LG01g22460 vs. ExPASy TrEMBL
Match: A0A5A7T8Y5 (Transcription factor MYB59-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002300 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.56e-16
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 1   MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQS- 60
           MKP+R++Q++VP+ DNKT PPIS  ++    ++MKPY  D+D+LGMVFT+P AM   +  
Sbjct: 112 MKPRRKSQIIVPKTDNKTLPPISRCEEHV-MELMKPY--DSDDLGMVFTDPTAMEDHEQT 171

Query: 61  -YLSMVYEDFATW--------AAAAAAEESYLWGGLWEDSNN 92
            YLS VY+D   W        A  A  EE  LW GLWE   N
Sbjct: 172 YYLSKVYQDLTNWTVESVAVAAVVAEQEEESLWDGLWEVPEN 210

[Close]

BLAST of Cp4.1LG01g22460 vs. ExPASy TrEMBL
Match: A0A1S3CAT1 (transcription factor MYB59-like OS=Cucumis melo OX=3656 GN=LOC103498747 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.70e-16
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 2   KPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQS-- 61
           KP+R++Q++VP+ DNKT PPIS  ++R   ++MKPY  D+D+LGMVFT+P AM   +   
Sbjct: 115 KPRRKSQIIVPKTDNKTLPPISRCEERV-MELMKPY--DSDDLGMVFTDPTAMEDHEQTY 174

Query: 62  YLSMVYEDFATW--------AAAAAAEESYLWGGLWEDSNN 92
           YLS VY+D   W        A  A  EE  LW GLWE   N
Sbjct: 175 YLSKVYQDLTNWTVESGAVAAVVAEQEEESLWDGLWEVPEN 212

[Close]

BLAST of Cp4.1LG01g22460 vs. ExPASy TrEMBL
Match: A0A0A0KSK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G641610 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.10e-13
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1   MKPKREAQMVVPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQS- 60
           MKPKR+++++V + DNKT PP++  ++    ++MKPY+ DN++L MVFTEP AM   +  
Sbjct: 140 MKPKRKSKIMVGKTDNKTMPPVTRCEEHV-MELMKPYDSDNNDLSMVFTEPTAMEDHEQT 199

Query: 61  -YLSMVYEDFATWAAAAAAEESYLW 83
            YLSMVY+D   WAA    E  + W
Sbjct: 200 YYLSMVYQDLTNWAAEKKEESLWEW 223

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g22460 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g22460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554284.1	1.17e-58	100.00	transcription factor MYB59-like [Cucurbita pepo subsp. pepo]	[more]
XP_022954581.1	1.29e-55	96.81	transcription factor MYB59-like [Cucurbita moschata]	[more]
KAG6602540.1	2.59e-55	96.81	Transcription factor MYB59, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022990755.1	9.92e-53	94.68	transcription factor MYB59-like [Cucurbita maxima]	[more]
KAG7033217.1	9.71e-47	97.50	Transcription factor MYB23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG01g22460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRA0	6.24e-56	96.81	transcription factor MYB59-like OS=Cucurbita moschata OX=3662 GN=LOC111456806 PE...	[more]
A0A6J1JQZ1	4.80e-53	94.68	transcription factor MYB59-like OS=Cucurbita maxima OX=3661 GN=LOC111487542 PE=4...	[more]
A0A5A7T8Y5	3.56e-16	47.06	Transcription factor MYB59-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CAT1	3.70e-16	47.52	transcription factor MYB59-like OS=Cucumis melo OX=3656 GN=LOC103498747 PE=4 SV=...	[more]
A0A0A0KSK2	2.10e-13	45.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G641610 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g22460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g22460.1	Cp4.1LG01g22460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding