Cp4.1LG01g21660 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g21660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA replication complex GINS protein PSF3-like
Location	Cp4.1LG01: 20641293 .. 20644248 (-)
RNA-Seq Expression	Cp4.1LG01g21660
Synteny	Cp4.1LG01g21660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAGTAAACATTTTGCTGTAGAAGTAGGTGGTGCCAGTTGAAAATATATTGATATTGATGACATTGAACATTGGAGCAACCTGTTGAAGACCCTAAGAAATGACAAATTATTATGATATTGATGACATTCTGGCGGAGGAAGAGGTCAATATCTTATTCTTTTACTTGATAAGACTTTATAAACTCGCAATCTCAATATTGAATCTTGTTTTGTGCGCTTGACAGCTTGTCTCAGTTATGTTCCAAAAGGCAGTTAATGGAGTTGCCATCGATCCCAGTTCTGAAACAGATTCTGTGAGTTGGATTAGTAGGAGACAGGTTATGGAAGATGAATGACGAACTTATGTTTTCTTTTCTGGTGCAATTTCAGGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCAAAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTGCCTGCTTGTTTTAACCAAAGGTAGCAATCGCCATTATACGCAGGCTTTGCATACGACCAAGAATTTCCCTGAACTTTTATTGTCTAGACTTTTGGGGAGCTTAAGAGAATGAGGATCTTCCTTACTACACCCCGACTTACTCTCTAAAAACTGACCTGCAAAGACACTGAATTCTGATTCTTTTTCTTCTAACTTTGTGGTTGCAGAATTCATGCTTGATTGACTTAATTTCTTTTCATCTGCTTATTGTTTTACGAGCAGAAAGTTCTGAATTGGAATCTTAAGAGCACAGGAATTAGTCAAATTTAATGAGATCATTTTAAAGTTGTTGGTGGTATTATTTTGAAAAGAACTTCCCTTCTAAGCGCTCATGTATTACTTCGGAGACAAGTGATGTTAATGGCATCGCCCTCCAGTTTCATCAATTAAAACAACTGTGCATGATCTATATGGCATGAAATTGTAGTATTCCAAAAACTTTTGAGATTTGGTTTATAGAATCTTGTTACTTGCTCCGTTGAAGCTGACCCACAAAGAAAATTATTTTTTTCCTTTGTGTAGTATTCTGAGCCTGTGTATGCTCAATCTTTTCATGTGCTAACTAATTAATTACCAGCAGAGATTTCCTACCCTAGAATTTTATGATCAAAGGAATCAATGAGACTTTGAAGATGATATTTGTTCTTATATATATATATAAAGATGATGATATTTGTAGTTGACTAGTGCTCTTTTTCTCTATGCAGAACGCGACTTGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGAAGTCAATACTTCTATGAATTTGGATGCAAAATTGCACCATTGTGAGTATCTTGAGATCCAACTCTGTGTGCATCAGATTTTTTTTTTAATTTTTTTTTTTTTTTTTTTAAATATCCATATGAATCCATACTTGAATTTCATAGGATATTGAATCTTAGATAGGTGGCACTATGAATTTATCATAATTATTTTATGAGGAGAAAATTTACATTGCTGTTTTTCCATTATTTTAGCTTAAGTCATACTTTATATCTACTGGATGGTTAAAGCATGTCAGTGCACTTTCATTTGACATACATTTGTACTAAAATAAGCATTGTTTGTTTTCACCTTTGACAGAACTACCATTCTGAAGGTATGCCATTTAACAGATCCTTCTTTTAACGTAATAATTAGGATATATAGTCTCAAGGCTTCTTTTTTACTGCCGTCTAAATGACATATCAAACGATCAATTTAAGCTTGTATATTAAGCATGTCGATTGGACATCCTATCAATGACTAAGGATCTTAACTTTAGGCTTGAACTCTTGGGAGTATTTTATAATAATCTGTCTAGCATGTTGTCATCTCAAGTTCTGCATCTCGATGAATATTAATATCATTTTCATTCCATTGGTAGATGTAGACTGATAAATATGCATAAAGCTTTAAAACTGACTAGCTAACCCACTCTACATATGAAGTATATCTTGTAAAAAGTGGTTGTTGCCTTGATCTCGTGCATTTAGGATGTCTACCATATCTCGCTGTTAGCAATATTTTTTAAGTGTACCTAAATGGACGAGAACGCAATAGATAGAGTGCTATTTCTCATTTTTGTTTCACAAACTTCAATGTCAGGGTTGGTGACAGAACAATCGGTTCTTGGCTTTTATCCACGTTCAAAAGTAGGTACAAGGAAGTTTTGACCAAGGCTCACACTGCAGTGTTTGCTGCAAGTTCAAAATACTTGACACTTCTATCAAAGGAAGAAACTAAAAGTGAGATTTTTGTTGCATGTTTTGTCTGTCCTCTGTTTTCATATTTGGTGCTTCTCTTCAAACTCACGTCTCAACATAATCATTGTATGCAGTGTATGAGGCAGCCCAGTCCTCTATGACAGCCTTTAAGAAATGGCGAATCGGTGGGCCTAGATTTCAGAAAGCATCCTTTCTTGGGAGGAAGAGGAAGTCTTCTGAGTAGGTACTAAGTCAAGCTTAAATGTATTCTATTTTCATCCCTTGGTTGCATAAGCATAGAAAACAGTGGAAAAGTAGTAATTTATTCATAATTTTTTTTTTTTTTTTTTAAATGTTTCATTATTGCCATTTCAACTTCTCATTTTTTTTCCTTCTCCCCTTTCTAAGGATGTTGAAACCTTTCCTTAGTATATGCGTTTTAAAACCTTGAGAAAAATCTCGAAAGAGAAAGCCCAGAGATGACAATATCTTCTAGTGATGGATTTTGGCTTGGACTTGGACTCTTACCCCAAAAGATGTAATCAGGTCTATCACATGTTGCTAAGGTGAATCTTGTATCTTGTATGAACACACAATAACACGTAGCATACTCAAAATCATTCAAGAGGAAGAAATAAATGACTAATCTTGATAGTGAAGTCTTTGGAAAGTGAGATTCTAAAGTCGAAACTTTATATAATTAAATTATATGAGTAATACCCGTCAAATTTGAATGTTTCTAGAGTGGGTAAGACATTAGGGAGC

mRNA sequence

TCCAGTAAACATTTTGCTGTAGAACTTGTCTCAGTTATGTTCCAAAAGGCAGTTAATGGAGTTGCCATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCAAAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTGCCTGCTTGTTTTAACCAAAGAACGCGACTTGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGAAGTCAATACTTCTATGAATTTGGATGCAAAATTGCACCATTGGTTGGTGACAGAACAATCGGTTCTTGGCTTTTATCCACGTTCAAAAGTAGGTACAAGGAAGTTTTGACCAAGGCTCACACTGCAGTGTTTGCTGCAAGTTCAAAATACTTGACACTTCTATCAAAGGAAGAAACTAAAATGTATGAGGCAGCCCAGTCCTCTATGACAGCCTTTAAGAAATGGCGAATCGGTGGGCCTAGATTTCAGAAAGCATCCTTTCTTGGGAGGAAGAGGAAGTCTTCTGAGTAGGTACTAAGTCAAGCTTAAATGTATTCTATTTTCATCCCTTGGTTGCATAAGCATAGAAAACAGTGGAAAAGTAGTAATTTATTCATAATTTTTTTTTTTTTTTTTTAAATGTTTCATTATTGCCATTTCAACTTCTCATTTTTTTTCCTTCTCCCCTTTCTAAGGATGTTGAAACCTTTCCTTAGTATATGCGTTTTAAAACCTTGAGAAAAATCTCGAAAGAGAAAGCCCAGAGATGACAATATCTTCTAGTGATGGATTTTGGCTTGGACTTGGACTCTTACCCCAAAAGATGTAATCAGGTCTATCACATGTTGCTAAGGTGAATCTTGTATCTTGTATGAACACACAATAACACGTAGCATACTCAAAATCATTCAAGAGGAAGAAATAAATGACTAATCTTGATAGTGAAGTCTTTGGAAAGTGAGATTCTAAAGTCGAAACTTTATATAATTAAATTATATGAGTAATACCCGTCAAATTTGAATGTTTCTAGAGTGGGTAAGACATTAGGGAGC

Coding sequence (CDS)

TCCAGTAAACATTTTGCTGTAGAACTTGTCTCAGTTATGTTCCAAAAGGCAGTTAATGGAGTTGCCATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCAAAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTGCCTGCTTGTTTTAACCAAAGAACGCGACTTGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGAAGTCAATACTTCTATGAATTTGGATGCAAAATTGCACCATTGGTTGGTGACAGAACAATCGGTTCTTGGCTTTTATCCACGTTCAAAAGTAGGTACAAGGAAGTTTTGACCAAGGCTCACACTGCAGTGTTTGCTGCAAGTTCAAAATACTTGACACTTCTATCAAAGGAAGAAACTAAAATGTATGAGGCAGCCCAGTCCTCTATGACAGCCTTTAAGAAATGGCGAATCGGTGGGCCTAGATTTCAGAAAGCATCCTTTCTTGGGAGGAAGAGGAAGTCTTCTGAGTAG

Protein sequence

SSKHFAVELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTRLEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE

Homology

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BLAST of Cp4.1LG01g21660 vs. ExPASy Swiss-Prot
Match: Q7ZT01 (DNA replication complex GINS protein PSF3 OS=Xenopus laevis OX=8355 GN=gins3 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.0e-13
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 0


Query: 23  IDPSSETDSVESGSKVELPFWLAKELH--LRQVAVMGLPACFNQRTRLEIQADAAFVDLR 82
           +D   ++DS+  GSK+ELP WLAK L+   R+V  + LP  + +  R    ADA  VDL 
Sbjct: 45  LDKGGDSDSIPEGSKMELPLWLAKGLYDNKRRVLSVELPKIYREGWRTVFSADANVVDLH 104

Query: 83  SRSQYFYEFGCKIAPLVGDRT--IGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLTLLSK 142
               ++Y FG ++          I   +L TF  R++ ++  +  A    +S  +  L +
Sbjct: 105 KMGPHYYGFGSQLLNFDSPENPEIAKTILQTFVGRFRRIMDSSQNAYNEDTSGLVARLDE 164

Query: 143 EETKMYEAAQSSMTAFKKWRIGGPRFQKASFL---GRKRKSSE 179
            E  ++ A Q  + AF+ W  G      AS L    +KRK +E
Sbjct: 165 LERSLFRAGQRGLNAFQSWERGKAAQITASNLVQNYKKRKFNE 207

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BLAST of Cp4.1LG01g21660 vs. ExPASy Swiss-Prot
Match: Q9CY94 (DNA replication complex GINS protein PSF3 OS=Mus musculus OX=10090 GN=Gins3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 42/139 (30.22%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 27  SETD-SVESGSKVELPFWLAKEL--HLRQVAVMGLPACFNQRTRLEIQADAAFVDLRSRS 86
           SE D  +  G+K+ELP WLAK L  H R++  + LP  + +  R    ADA  VDL    
Sbjct: 54  SEPDHPLPQGTKLELPLWLAKGLFDHKRRILSVELPKMYQEGWRTVFSADANVVDLHKMG 113

Query: 87  QYFYEFGCKIAPLVG--DRTIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLTLLSKEET 146
            +FY FG ++       +  I   LL TF  R++ ++  +  +    +S  +  L + E 
Sbjct: 114 PHFYGFGSQLLHFDSPENADISQSLLKTFIGRFRRIMDSSQNSYNEDTSALVARLDETER 173

Query: 147 KMYEAAQSSMTAFKKWRIG 161
            +++  Q S+  F+ W  G
Sbjct: 174 GLFQIGQRSLNDFQSWEKG 192

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BLAST of Cp4.1LG01g21660 vs. ExPASy Swiss-Prot
Match: Q9BRX5 (DNA replication complex GINS protein PSF3 OS=Homo sapiens OX=9606 GN=GINS3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-10
Identity = 42/139 (30.22%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 27  SETD-SVESGSKVELPFWLAKEL--HLRQVAVMGLPACFNQRTRLEIQADAAFVDLRSRS 86
           +ETD +V  GSK+ELP WLAK L  + R++  + LP  + +  R    AD   VDL    
Sbjct: 54  AETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMG 113

Query: 87  QYFYEFGCKIAPLVG--DRTIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLTLLSKEET 146
            +FY FG ++       +  I   LL TF  R++ ++  +  A    +S  +  L + E 
Sbjct: 114 PHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMER 173

Query: 147 KMYEAAQSSMTAFKKWRIG 161
            +++  Q  +  F+ W  G
Sbjct: 174 GLFQTGQKGLNDFQCWEKG 192

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BLAST of Cp4.1LG01g21660 vs. ExPASy Swiss-Prot
Match: Q5RDV0 (DNA replication complex GINS protein PSF3 OS=Pongo abelii OX=9601 GN=GINS3 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-10
Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 27  SETD-SVESGSKVELPFWLAKEL--HLRQVAVMGLPACFNQRTRLEIQADAAFVDLRSRS 86
           +ETD +V  GSK+ELP WLAK L  + R++  + LP  + +  R    AD   VDL    
Sbjct: 54  AETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMG 113

Query: 87  QYFYEFGCKIAPLVG--DRTIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLTLLSKEET 146
            +FY FG ++       +  I   LL TF  R++ ++  +  A    +S  +  L + E 
Sbjct: 114 PHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMER 173

Query: 147 KMYEAAQSSMTAFKKWRIG 161
            +++  Q+ +  F+ W  G
Sbjct: 174 GLFQIGQNGLNDFQCWEKG 192

[Close]

BLAST of Cp4.1LG01g21660 vs. ExPASy Swiss-Prot
Match: Q54EH6 (Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium discoideum OX=44689 GN=gins3 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 33/144 (22.92%), Postives = 66/144 (45.83%), Query Frame = 0


Query: 14  FQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTRLEIQAD 73
           F  A N   ++  S    ++ GSKV+LP+W+A  L       + +P  +    + ++ AD
Sbjct: 21  FYDAYNLGQLEEGSRDPDMKKGSKVDLPYWMALALAKSNFVSVIMPPEYQDEYKNKLIAD 80

Query: 74  AAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYL 133
              + +R    Y+ + G +++   GDR +   L   F+ R+  + +++        SK L
Sbjct: 81  PNVISMR-LFPYYDKIGVQLSDFFGDRKLKLLLFRVFRERFLNIYSQSINLKETDISKIL 140

Query: 134 TLLSKEETKMYEAAQSSMTAFKKW 158
             L+ +E +++     S   + KW
Sbjct: 141 GNLTYQEREVFSNGYKSSNDYDKW 163

[Close]

BLAST of Cp4.1LG01g21660 vs. NCBI nr
Match: XP_022962205.1 (DNA replication complex GINS protein PSF3-like [Cucurbita moschata] >XP_022962214.1 DNA replication complex GINS protein PSF3-like [Cucurbita moschata] >XP_022962222.1 DNA replication complex GINS protein PSF3-like [Cucurbita moschata] >XP_023549787.1 DNA replication complex GINS protein PSF3-like [Cucurbita pepo subsp. pepo] >XP_023549796.1 DNA replication complex GINS protein PSF3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336 bits (862), Expect = 6.34e-116
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR
Sbjct: 15  ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA
Sbjct: 75  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE
Sbjct: 135 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 185

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BLAST of Cp4.1LG01g21660 vs. NCBI nr
Match: KAG6602618.1 (hypothetical protein SDJN03_07851, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336 bits (862), Expect = 6.34e-116
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR
Sbjct: 15  ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA
Sbjct: 75  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE
Sbjct: 135 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 185

[Close]

BLAST of Cp4.1LG01g21660 vs. NCBI nr
Match: XP_022990174.1 (DNA replication complex GINS protein PSF3-like [Cucurbita maxima] >XP_022990175.1 DNA replication complex GINS protein PSF3-like [Cucurbita maxima] >XP_022990176.1 DNA replication complex GINS protein PSF3-like [Cucurbita maxima])

HSP 1 Score: 335 bits (859), Expect = 1.82e-115
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR
Sbjct: 15  ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA
Sbjct: 75  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYLT+LSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE
Sbjct: 135 ASSKYLTVLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 185

[Close]

BLAST of Cp4.1LG01g21660 vs. NCBI nr
Match: KAG7033298.1 (PSF3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329 bits (843), Expect = 6.62e-113
Identity = 171/179 (95.53%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSV--------ESGSKVELPFWLAKELHLRQVAVMGLP 67
           ELVSVMFQKAVNGVAIDPSSETDSV        ESGSKVELPFWLAKELHLRQVAVMGLP
Sbjct: 15  ELVSVMFQKAVNGVAIDPSSETDSVSWISRRQVESGSKVELPFWLAKELHLRQVAVMGLP 74

Query: 68  ACFNQRTRLEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLT 127
           ACFNQRTRLEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLT
Sbjct: 75  ACFNQRTRLEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLT 134

Query: 128 KAHTAVFAASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           KAHTAVFAASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE
Sbjct: 135 KAHTAVFAASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 193

[Close]

BLAST of Cp4.1LG01g21660 vs. NCBI nr
Match: XP_038885801.1 (DNA replication complex GINS protein PSF3-like [Benincasa hispida] >XP_038885802.1 DNA replication complex GINS protein PSF3-like [Benincasa hispida])

HSP 1 Score: 317 bits (812), Expect = 3.05e-108
Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSV+FQKAVNGV IDPSSETDSVESGSKVELPFWLA+ELHLRQVAVM LP+CFNQRTR
Sbjct: 19  ELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMALPSCFNQRTR 78

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSR  +FYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA
Sbjct: 79  LEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 138

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYLTLLS EETKMYEAAQSSMTAFKKWR+GGPRFQKASFL RKRKSSE
Sbjct: 139 ASSKYLTLLSNEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRKRKSSE 189

[Close]

BLAST of Cp4.1LG01g21660 vs. ExPASy TrEMBL
Match: A0A6J1HEE0 (DNA replication complex GINS protein PSF3-like OS=Cucurbita moschata OX=3662 GN=LOC111462725 PE=3 SV=1)

HSP 1 Score: 336 bits (862), Expect = 3.07e-116
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR
Sbjct: 15  ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA
Sbjct: 75  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE
Sbjct: 135 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 185

[Close]

BLAST of Cp4.1LG01g21660 vs. ExPASy TrEMBL
Match: A0A6J1JM79 (DNA replication complex GINS protein PSF3-like OS=Cucurbita maxima OX=3661 GN=LOC111487145 PE=3 SV=1)

HSP 1 Score: 335 bits (859), Expect = 8.80e-116
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR
Sbjct: 15  ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA
Sbjct: 75  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYLT+LSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE
Sbjct: 135 ASSKYLTVLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 185

[Close]

BLAST of Cp4.1LG01g21660 vs. ExPASy TrEMBL
Match: A0A1S3B3H3 (DNA replication complex GINS protein PSF3-like OS=Cucumis melo OX=3656 GN=LOC103485572 PE=3 SV=1)

HSP 1 Score: 315 bits (808), Expect = 5.24e-108
Identity = 158/171 (92.40%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSV+FQKAVNGV IDPSSETDSVESGSKVELPFWLA+ELHLRQVAVM LP+CFNQRTR
Sbjct: 15  ELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMALPSCFNQRTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSR Q+FYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAH+AVFA
Sbjct: 75  LEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHSAVFA 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYL LLSKEETKMYEAAQSSMTAFKKWR+GGPRFQ+ASFL RKRKS+E
Sbjct: 135 ASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRKRKSTE 185

[Close]

BLAST of Cp4.1LG01g21660 vs. ExPASy TrEMBL
Match: A0A5A7UGU7 (DNA replication complex GINS protein PSF3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002360 PE=3 SV=1)

HSP 1 Score: 315 bits (808), Expect = 1.13e-107
Identity = 158/171 (92.40%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSV+FQKAVNGV IDPSSETDSVESGSKVELPFWLA+ELHLRQVAVM LP+CFNQRTR
Sbjct: 37  ELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMALPSCFNQRTR 96

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSR Q+FYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAH+AVFA
Sbjct: 97  LEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHSAVFA 156

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYL LLSKEETKMYEAAQSSMTAFKKWR+GGPRFQ+ASFL RKRKS+E
Sbjct: 157 ASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRKRKSTE 207

[Close]

BLAST of Cp4.1LG01g21660 vs. ExPASy TrEMBL
Match: A0A0A0K8J6 (Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G011640 PE=3 SV=1)

HSP 1 Score: 313 bits (802), Expect = 4.94e-107
Identity = 157/171 (91.81%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           ELVSV+FQKAVNGV IDPSSETDSVESGSKVELPFWLA+ELHLRQVAVM LP+CFNQRTR
Sbjct: 19  ELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMALPSCFNQRTR 78

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LEIQADAAFVDLRSR Q+FYEFGCKIAPLVGDRTIGSWLLST KSRYKEVLTKAH+AVFA
Sbjct: 79  LEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTLKSRYKEVLTKAHSAVFA 138

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 178
           ASSKYL LLSKEETKMYEAAQSSMTAFKKWR+GGPRFQ+ASFL RKRKS+E
Sbjct: 139 ASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRKRKSTE 189

[Close]

BLAST of Cp4.1LG01g21660 vs. TAIR 10
Match: AT1G19080.1 (GINS complex protein )

HSP 1 Score: 238.4 bits (607), Expect = 4.3e-63
Identity = 117/170 (68.82%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           E V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ   + LP CF+Q+TR
Sbjct: 15  EFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQAVTINLPPCFDQKTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LE+QADAA+VDLRSR  YFYEFGCKI PLV DRT+G  L + FK RYKE LTK +TA   
Sbjct: 75  LEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIRYKEALTKVYTAAHI 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSS 178
            +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS LGRKRK S
Sbjct: 135 TASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRKRKDS 184

[Close]

BLAST of Cp4.1LG01g21660 vs. TAIR 10
Match: AT1G19080.2 (GINS complex protein )

HSP 1 Score: 238.4 bits (607), Expect = 4.3e-63
Identity = 117/170 (68.82%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           E V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ   + LP CF+Q+TR
Sbjct: 15  EFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQAVTINLPPCFDQKTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LE+QADAA+VDLRSR  YFYEFGCKI PLV DRT+G  L + FK RYKE LTK +TA   
Sbjct: 75  LEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIRYKEALTKVYTAAHI 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSS 178
            +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS LGRKRK S
Sbjct: 135 TASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRKRKDS 184

[Close]

BLAST of Cp4.1LG01g21660 vs. TAIR 10
Match: AT3G55490.1 (GINS complex protein )

HSP 1 Score: 238.4 bits (607), Expect = 4.3e-63
Identity = 117/170 (68.82%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 8   ELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTR 67
           E V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ   + LP CF+Q+TR
Sbjct: 15  EFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQAVTINLPPCFDQKTR 74

Query: 68  LEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFA 127
           LE+QADAA+VDLRSR  YFYEFGCKI PLV DRT+G  L + FK RYKE LTK +TA   
Sbjct: 75  LEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIRYKEALTKVYTAAHI 134

Query: 128 ASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSS 178
            +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS LGRKRK S
Sbjct: 135 TASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRKRKDS 184

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g21660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7ZT01	9.0e-13	30.67	DNA replication complex GINS protein PSF3 OS=Xenopus laevis OX=8355 GN=gins3 PE=...	[more]
Q9CY94	2.4e-10	30.22	DNA replication complex GINS protein PSF3 OS=Mus musculus OX=10090 GN=Gins3 PE=2...	[more]
Q9BRX5	7.1e-10	30.22	DNA replication complex GINS protein PSF3 OS=Homo sapiens OX=9606 GN=GINS3 PE=1 ...	[more]
Q5RDV0	7.1e-10	30.22	DNA replication complex GINS protein PSF3 OS=Pongo abelii OX=9601 GN=GINS3 PE=2 ...	[more]
Q54EH6	3.6e-06	22.92	Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium discoideum O...	[more]

BLAST of Cp4.1LG01g21660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962205.1	6.34e-116	100.00	DNA replication complex GINS protein PSF3-like [Cucurbita moschata] >XP_02296221...	[more]
KAG6602618.1	6.34e-116	100.00	hypothetical protein SDJN03_07851, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022990174.1	1.82e-115	99.42	DNA replication complex GINS protein PSF3-like [Cucurbita maxima] >XP_022990175....	[more]
KAG7033298.1	6.62e-113	95.53	PSF3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038885801.1	3.05e-108	93.57	DNA replication complex GINS protein PSF3-like [Benincasa hispida] >XP_038885802...	[more]

BLAST of Cp4.1LG01g21660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEE0	3.07e-116	100.00	DNA replication complex GINS protein PSF3-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JM79	8.80e-116	99.42	DNA replication complex GINS protein PSF3-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3B3H3	5.24e-108	92.40	DNA replication complex GINS protein PSF3-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7UGU7	1.13e-107	92.40	DNA replication complex GINS protein PSF3-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0K8J6	4.94e-107	91.81	Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G011640 PE=3 S...	[more]

BLAST of Cp4.1LG01g21660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19080.1	4.3e-63	68.82	GINS complex protein	[more]
AT1G19080.2	4.3e-63	68.82	GINS complex protein	[more]
AT3G55490.1	4.3e-63	68.82	GINS complex protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038437	GINS complex, subunit Psf3 superfamily	GENE3D	1.20.58.2050		coord: 5..159 e-value: 2.0E-40 score: 140.3
IPR021151	GINS subunit, domain A	PFAM	PF05916	Sld5	coord: 38..141 e-value: 2.0E-9 score: 37.9
IPR010492	GINS complex, subunit Psf3	PANTHER	PTHR22768	UNCHARACTERIZED	coord: 8..177
None	No IPR available	CDD	cd11713	GINS_A_psf3	coord: 58..160 e-value: 1.85136E-29 score: 102.729
None	No IPR available	SUPERFAMILY	160059	PriA/YqbF domain	coord: 8..59
IPR036224	GINS, helical bundle-like domain superfamily	SUPERFAMILY	158573	GINS helical bundle-like	coord: 58..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g21660.1	Cp4.1LG01g21660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902975	mitotic DNA replication initiation
cellular_component	GO:0000811	GINS complex