Cp4.1LG01g21490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g21490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG01: 18066393 .. 18066614 (-)
RNA-Seq Expression	Cp4.1LG01g21490
Synteny	Cp4.1LG01g21490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

mRNA sequence

ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

Coding sequence (CDS)

ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

Protein sequence

MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQERGSEGADRSRQSPRRQR

Homology

[Close]

BLAST of Cp4.1LG01g21490 vs. NCBI nr
Match: KGN46091.1 (hypothetical protein Csa_005100 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 4.16e-18
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQ 55
          MV+R+ERETLGIGCG+ALCA+ISPACEFA+AILT LR RP PN    S   C SQ
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQ 55

[Close]

BLAST of Cp4.1LG01g21490 vs. NCBI nr
Match: TYK04453.1 (hypothetical protein E5676_scaffold409G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.58e-08
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MVKRRERETLGIGCGIALCAMISPACEFAK 30
          MV+R+ERE LGIGCGI LCA+ISPACEFA+
Sbjct: 1  MVRRKEREILGIGCGIPLCAVISPACEFAR 30

[Close]

BLAST of Cp4.1LG01g21490 vs. ExPASy TrEMBL
Match: A0A0A0KEA3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052660 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.01e-18
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQ 55
          MV+R+ERETLGIGCG+ALCA+ISPACEFA+AILT LR RP PN    S   C SQ
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQ 55

[Close]

BLAST of Cp4.1LG01g21490 vs. ExPASy TrEMBL
Match: A0A5D3BXJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00580 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.63e-09
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MVKRRERETLGIGCGIALCAMISPACEFAK 30
          MV+R+ERE LGIGCGI LCA+ISPACEFA+
Sbjct: 1  MVRRKEREILGIGCGIPLCAVISPACEFAR 30

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g21490 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g21490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46091.1	4.16e-18	70.91	hypothetical protein Csa_005100 [Cucumis sativus]	[more]
TYK04453.1	1.58e-08	80.00	hypothetical protein E5676_scaffold409G00580 [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG01g21490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEA3	2.01e-18	70.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052660 PE=4 SV=1	[more]
A0A5D3BXJ4	7.63e-09	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cp4.1LG01g21490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g21490.1	Cp4.1LG01g21490.1	mRNA