Cp4.1LG01g21070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g21070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein MKS1-like
Location	Cp4.1LG01: 17809037 .. 17809507 (+)
RNA-Seq Expression	Cp4.1LG01g21070
Synteny	Cp4.1LG01g21070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAAGAAAACACCTTCACCTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCAAAAAGCCGCCACCGCTCCCCCCGCCACCGCCGCAGCACCGCCCCGTCATAATCTATACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTCAAGGACTTAGTCCAACGCCTCACTGGCTACCAACCTAATAGCCCTGACATTCATCAAGTCCAATCCAAGACAATATCAATGTCTACATCGATGCCAACGAGTAGTACCGAACAAGGAGTGGAGAGTCTAAGTCGTTTCCCAACTGGGATATTATCGCCGACGCCGGAGTTTCTACCGCCGTCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGTTCTATAGCTCCGAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTGATTTTCATTAA

mRNA sequence

ATGGCTGAAAGAAAACACCTTCACCTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCAAAAAGCCGCCACCGCTCCCCCCGCCACCGCCGCAGCACCGCCCCGTCATAATCTATACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTCAAGGACTTAGTCCAACGCCTCACTGGCTACCAACCTAATAGCCCTGACATTCATCAAGTCCAATCCAAGACAATATCAATGTCTACATCGATGCCAACGAGTAGTACCGAACAAGGAGTGGAGAGTCTAAGTCGTTTCCCAACTGGGATATTATCGCCGACGCCGGAGTTTCTACCGCCGTCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGTTCTATAGCTCCGAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTGATTTTCATTAA

Coding sequence (CDS)

ATGGCTGAAAGAAAACACCTTCACCTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCAAAAAGCCGCCACCGCTCCCCCCGCCACCGCCGCAGCACCGCCCCGTCATAATCTATACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTCAAGGACTTAGTCCAACGCCTCACTGGCTACCAACCTAATAGCCCTGACATTCATCAAGTCCAATCCAAGACAATATCAATGTCTACATCGATGCCAACGAGTAGTACCGAACAAGGAGTGGAGAGTCTAAGTCGTTTCCCAACTGGGATATTATCGCCGACGCCGGAGTTTCTACCGCCGTCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGTTCTATAGCTCCGAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTGATTTTCATTAA

Protein sequence

MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH

Homology

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10
Identity = 48/157 (30.57%), Postives = 72/157 (45.86%), Query Frame = 0


Query: 3   ERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQ---------HRPVIIYTDSPKIIH 62
           +++ L + G RPS L + K SH IKKPP  P PPP            PV+IY  SPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TNPTQFKDLVQRLTGYQPN-----------SPDIHQVQSKTISMSTSMPTSSTEQGVE-- 122
              ++F ++VQRLTG               SP      ++  S       ++ ++ VE  
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

Query: 123 -------SLSRFPTGILSPTPEFLPPSASTDLSSLTH 131
                      +  GILSP+P  LP +++   S + H
Sbjct: 138 TAMEEAAEFGGYAPGILSPSPALLPTASTGIFSPMYH 174

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 45/123 (36.59%), Postives = 59/123 (47.97%), Query Frame = 0


Query: 11  GHRPSALKISKHSHNIKKPPPLPPPPPQHR-----------------PVIIYTDSPKIIH 70
           G +P+ LK+   SH I K PPL PP PQ +                 PV IYT +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TNPTQFKDLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPT 117
           T+P  F  LVQRLTG         Q  + T S S+S  TS  +    ++     G++SP 
Sbjct: 73  THPNNFMTLVQRLTG---------QTSTSTTSSSSSSSTSEPKD-TSTMVDTSHGLISPA 125

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-07
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 14  PSALKISKHSHNIKKPPP----LPPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGY 73
           P  LK++K SH IKKPP          P+H PVIIYT +P+IIHTNP  F  LVQ+LTG 
Sbjct: 43  PPTLKVNKDSHVIKKPPSPSSFSSAAKPRH-PVIIYTHTPRIIHTNPKDFMALVQKLTGM 102

Query: 74  QPNSPDIHQVQS-------KTISMSTSMPT 93
             +  D+    +       K+I+ + S PT
Sbjct: 103 THSDEDLGGGNAMTDPGVVKSINRTVSEPT 131

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05
Identity = 44/121 (36.36%), Postives = 56/121 (46.28%), Query Frame = 0


Query: 9   LHGHRPSALKISKHSHNIKKPPPLPPPPPQH---RPVIIYTDSPKIIHTNPTQFKDLVQR 68
           ++G RPS+LK++  SH IKK       P  H    PVIIY  SPK+IHT    F  LVQR
Sbjct: 9   INGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQR 68

Query: 69  LTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVE------SLSRFPTGILSPTPEFLPP 121
           LTG          ++  T   S+S+ T     G +      S  R     L+  P F P 
Sbjct: 69  LTGLD------EIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDMPLFTPS 123

[Close]

BLAST of Cp4.1LG01g21070 vs. NCBI nr
Match: XP_023542758.1 (protein MKS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305 bits (782), Expect = 1.49e-104
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK
Sbjct: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60

Query: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPPS 120
           DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPPS
Sbjct: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPPS 120

Query: 121 ASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 156
           ASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH
Sbjct: 121 ASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 156

[Close]

BLAST of Cp4.1LG01g21070 vs. NCBI nr
Match: KAG7032856.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265 bits (678), Expect = 1.31e-88
Identity = 142/162 (87.65%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           MAERKHL LHGHRPSALKISKHSHNIKKPPPLPPPP QHRPVIIYTDSPKIIHTNPTQFK
Sbjct: 1   MAERKHLQLHGHRPSALKISKHSHNIKKPPPLPPPPLQHRPVIIYTDSPKIIHTNPTQFK 60

Query: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPP- 120
           DLVQRLTG Q ++PDIHQVQSKTISMS SMPTSSTEQGVES+ RFPTGIL PT E LPP 
Sbjct: 61  DLVQRLTGCQLDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGRFPTGILPPTSELLPPI 120

Query: 121 -----SASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 156
                S S DLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH
Sbjct: 121 MPTLPSTSMDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 162

[Close]

BLAST of Cp4.1LG01g21070 vs. NCBI nr
Match: KAG6602164.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265 bits (677), Expect = 1.93e-88
Identity = 143/163 (87.73%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPP-LPPPPPQHRPVIIYTDSPKIIHTNPTQF 60
           MAERKHL LHGHRPSALKISKHSHNIKKPPP LPPPPPQHRPVIIYTDSPKIIHTNPTQF
Sbjct: 1   MAERKHLQLHGHRPSALKISKHSHNIKKPPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQF 60

Query: 61  KDLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPP 120
           KDLVQRLTG Q ++PDIHQVQSKTISMS SMPTSSTEQGVES+ RFPTGIL PT E LPP
Sbjct: 61  KDLVQRLTGCQHDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGRFPTGILPPTSELLPP 120

Query: 121 ------SASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 156
                 S S DLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH
Sbjct: 121 IMPTLPSTSMDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 163

[Close]

BLAST of Cp4.1LG01g21070 vs. NCBI nr
Match: XP_022959576.1 (protein MKS1-like [Cucurbita moschata])

HSP 1 Score: 254 bits (649), Expect = 2.91e-84
Identity = 138/162 (85.19%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           MAERKHL LHGHRPSALKISKHSHNI+KPPP     PQHRPVIIYTDSPKIIHTNPTQFK
Sbjct: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPP-----PQHRPVIIYTDSPKIIHTNPTQFK 60

Query: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFL--- 120
           DLVQRLTG QP++PDIHQVQSKTISMS SMPTSSTEQGVES+  FPTGIL PT E L   
Sbjct: 61  DLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPI 120

Query: 121 ---PPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 156
              PPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFP FH
Sbjct: 121 MPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 157

[Close]

BLAST of Cp4.1LG01g21070 vs. NCBI nr
Match: XP_038885910.1 (protein MKS1-like [Benincasa hispida])

HSP 1 Score: 153 bits (387), Expect = 2.97e-44
Identity = 100/173 (57.80%), Postives = 115/173 (66.47%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           M ERK +HL G RP+ALKI+K SH IKKPP  PP PP HRPVIIYT SPKIIHT PT+FK
Sbjct: 1   MPERKEVHLQGPRPAALKITKDSHKIKKPPLPPPHPPPHRPVIIYTVSPKIIHTEPTEFK 60

Query: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPP- 120
           DLVQRLTG +P+S +         SMS SM T+S +QGVE +     GILSPTP  LPP 
Sbjct: 61  DLVQRLTGLRPSSSN--DALDHPTSMSMSMNTNSIDQGVERVGH---GILSPTPGLLPPI 120

Query: 121 --------------SASTDLSSLTHYFQD-SSIAPNNFASSLDFFD-NFPDFH 156
                         +A+TD S  T +FQD S IA N+F+SSLDFF  NFPDFH
Sbjct: 121 SSNIFTPPPQAAMAAAATDPSPFTQFFQDFSPIATNHFSSSLDFFQQNFPDFH 168

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy TrEMBL
Match: A0A6J1H588 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111460606 PE=4 SV=1)

HSP 1 Score: 254 bits (649), Expect = 1.41e-84
Identity = 138/162 (85.19%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           MAERKHL LHGHRPSALKISKHSHNI+KPPP     PQHRPVIIYTDSPKIIHTNPTQFK
Sbjct: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPP-----PQHRPVIIYTDSPKIIHTNPTQFK 60

Query: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFL--- 120
           DLVQRLTG QP++PDIHQVQSKTISMS SMPTSSTEQGVES+  FPTGIL PT E L   
Sbjct: 61  DLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPI 120

Query: 121 ---PPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 156
              PPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFP FH
Sbjct: 121 MPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 157

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy TrEMBL
Match: A0A6J1FKV1 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 2.22e-42
Identity = 93/167 (55.69%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           MAERK L L G RP+ALKI+K SH I KPP        HRPVIIYT SPK+IHT+PTQFK
Sbjct: 1   MAERKELQLQGPRPAALKITKDSHKIGKPP--------HRPVIIYTVSPKVIHTDPTQFK 60

Query: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPP- 120
           DLVQRLTG++P+S D H   + T+ MST+       QG E +     GILSPTP  LPP 
Sbjct: 61  DLVQRLTGHKPSSHDSHHPPNTTMIMSTN------HQGTERVGH---GILSPTPGLLPPI 120

Query: 121 ---------SASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPDFH 156
                      S +LS LTH+F+D S IAPN F+ SLDFF NFPD H
Sbjct: 121 PANIFTPTPPQSAELSPLTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy TrEMBL
Match: A0A6J1JW33 (protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 2.08e-40
Identity = 90/167 (53.89%), Postives = 107/167 (64.07%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           MAERK + L G RP+ALKI+K SH I KPP        HRPVIIY+ SPK+IHT+PTQFK
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGKPP--------HRPVIIYSVSPKVIHTDPTQFK 60

Query: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFLPP- 120
           DLVQRLTG++P+S D H   + T+ MST+        G E +     GILSPTP  LPP 
Sbjct: 61  DLVQRLTGHKPSSHDSHHPPNTTMIMSTN------PHGAERVGH---GILSPTPGLLPPI 120

Query: 121 ---------SASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPDFH 156
                      S +LS LTH+F+D S IAPN F+ SLDFF NFPD H
Sbjct: 121 PANIFTPTPPQSAELSPLTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy TrEMBL
Match: A0A0A0KI80 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 1.40e-36
Identity = 98/181 (54.14%), Postives = 113/181 (62.43%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           M E+K L L G RPSALKI+K SH IKKPP LPPP P HRPVIIYT SPKIIHT+PT+FK
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPP-LPPPQP-HRPVIIYTVSPKIIHTDPTEFK 60

Query: 61  DLVQRLTGY-QPNSPDI-------HQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSP 120
           DLVQRLTG+ QP S          H      IS+ T+      + GV+ +     GILSP
Sbjct: 61  DLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAH--GILSP 120

Query: 121 TPEFLPPSAST---------------DLSSLTHYFQD-SSIAPNNFASSLDFFD-NFPDF 156
           TP  LPP +ST               DL+SLT +F D S IA N+F+SSLDFF  NFPDF
Sbjct: 121 TPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDF 177

[Close]

BLAST of Cp4.1LG01g21070 vs. ExPASy TrEMBL
Match: A0A5A7UZA1 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00830 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 7.15e-34
Identity = 94/180 (52.22%), Postives = 110/180 (61.11%), Query Frame = 0


Query: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           M E+K L L G RPSALKI+K SH IKKPP LPPP P HRPVIIYT SPKIIHT+PTQFK
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPP-LPPPQP-HRPVIIYTVSPKIIHTDPTQFK 60

Query: 61  DLVQRLTGYQ--PNSPDIHQV-----QSKTISMSTSMPTSSTEQGVESLSRFPTGILSPT 120
           DLVQRLTG+   P+S   H +         IS+  +        GV+ +     GILSPT
Sbjct: 61  DLVQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAH--GILSPT 120

Query: 121 PEFLPP---------------SASTDLSSLTHYFQDSSIAP-NNFASSLDFFD-NFPDFH 156
           P  LPP               +A+ DL+SLT +F D S  P N+F+ SLDFF  NFPDFH
Sbjct: 121 PGLLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176

[Close]

BLAST of Cp4.1LG01g21070 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-11
Identity = 48/157 (30.57%), Postives = 72/157 (45.86%), Query Frame = 0


Query: 3   ERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQ---------HRPVIIYTDSPKIIH 62
           +++ L + G RPS L + K SH IKKPP  P PPP            PV+IY  SPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TNPTQFKDLVQRLTGYQPN-----------SPDIHQVQSKTISMSTSMPTSSTEQGVE-- 122
              ++F ++VQRLTG               SP      ++  S       ++ ++ VE  
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

Query: 123 -------SLSRFPTGILSPTPEFLPPSASTDLSSLTH 131
                      +  GILSP+P  LP +++   S + H
Sbjct: 138 TAMEEAAEFGGYAPGILSPSPALLPTASTGIFSPMYH 174

[Close]

BLAST of Cp4.1LG01g21070 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 48/123 (39.02%), Postives = 59/123 (47.97%), Query Frame = 0


Query: 11  GHRPSALKISKHSHNIKKPPPLPPPPPQHR-----------------PVIIYTDSPKIIH 70
           G RP  LK+   SH I K PPL PP PQ +                 PVIIYT SP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 71  TNPTQFKDLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPT 117
           T+P  F  LVQRLTG    S       S + S STS P  ++     ++     G++SP 
Sbjct: 73  THPNNFMTLVQRLTGKTSTS-----TTSSSYSSSTSAPKDAS-----TMVDTSHGLISPA 125

[Close]

BLAST of Cp4.1LG01g21070 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-09
Identity = 45/123 (36.59%), Postives = 59/123 (47.97%), Query Frame = 0


Query: 11  GHRPSALKISKHSHNIKKPPPLPPPPPQHR-----------------PVIIYTDSPKIIH 70
           G +P+ LK+   SH I K PPL PP PQ +                 PV IYT +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TNPTQFKDLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPT 117
           T+P  F  LVQRLTG         Q  + T S S+S  TS  +    ++     G++SP 
Sbjct: 73  THPNNFMTLVQRLTG---------QTSTSTTSSSSSSSTSEPKD-TSTMVDTSHGLISPA 125

[Close]

BLAST of Cp4.1LG01g21070 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-08
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 14  PSALKISKHSHNIKKPPP----LPPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGY 73
           P  LK++K SH IKKPP          P+H PVIIYT +P+IIHTNP  F  LVQ+LTG 
Sbjct: 43  PPTLKVNKDSHVIKKPPSPSSFSSAAKPRH-PVIIYTHTPRIIHTNPKDFMALVQKLTGM 102

Query: 74  QPNSPDIHQVQS-------KTISMSTSMPT 93
             +  D+    +       K+I+ + S PT
Sbjct: 103 THSDEDLGGGNAMTDPGVVKSINRTVSEPT 131

[Close]

BLAST of Cp4.1LG01g21070 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 51.2 bits (121), Expect = 8.6e-07
Identity = 44/121 (36.36%), Postives = 56/121 (46.28%), Query Frame = 0


Query: 9   LHGHRPSALKISKHSHNIKKPPPLPPPPPQH---RPVIIYTDSPKIIHTNPTQFKDLVQR 68
           ++G RPS+LK++  SH IKK       P  H    PVIIY  SPK+IHT    F  LVQR
Sbjct: 9   INGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQR 68

Query: 69  LTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVE------SLSRFPTGILSPTPEFLPP 121
           LTG          ++  T   S+S+ T     G +      S  R     L+  P F P 
Sbjct: 69  LTGLD------EIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDMPLFTPS 123

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g21070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	8.1e-10	30.57	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	1.3e-07	36.59	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q9LS54	6.4e-07	43.33	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	1.2e-05	36.36	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Cp4.1LG01g21070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542758.1	1.49e-104	100.00	protein MKS1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7032856.1	1.31e-88	87.65	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAG6602164.1	1.93e-88	87.73	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_022959576.1	2.91e-84	85.19	protein MKS1-like [Cucurbita moschata]	[more]
XP_038885910.1	2.97e-44	57.80	protein MKS1-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG01g21070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H588	1.41e-84	85.19	protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111460606 PE=4 SV=1	[more]
A0A6J1FKV1	2.22e-42	55.69	protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1	[more]
A0A6J1JW33	2.08e-40	53.89	protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1	[more]
A0A0A0KI80	1.40e-36	54.14	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=...	[more]
A0A5A7UZA1	7.15e-34	52.22	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G008...	[more]

BLAST of Cp4.1LG01g21070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	5.8e-11	30.57	MAP kinase substrate 1	[more]
AT1G21326.1	1.4e-09	39.02	VQ motif-containing protein	[more]
AT1G21320.1	9.2e-09	36.59	nucleotide binding;nucleic acid binding	[more]
AT3G18360.1	4.6e-08	43.33	VQ motif-containing protein	[more]
AT1G68450.1	8.6e-07	36.36	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 48..68 e-value: 1.2E-9 score: 37.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..25
None	No IPR available	PANTHER	PTHR33143:SF6	F16F4.1 PROTEIN	coord: 6..101
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 6..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g21070.1	Cp4.1LG01g21070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus