Cp4.1LG01g21040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g21040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Hexosyltransferase
Location	Cp4.1LG01: 17782650 .. 17782907 (-)
RNA-Seq Expression	Cp4.1LG01g21040
Synteny	Cp4.1LG01g21040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGTGAAAATTTGCTAATATTGTCTTGAATTTCTTCTGAAGCAGTGAAGAAACAAGCAAGAGAAGGTTCCAAAGAATTAAAGATTTCAAAGTTGTTGAGAGGGCCCTCCATATTCCTTTTCGTGATAGGGTTTTGAACTGCAAACCTTCGTTAAAACTCGTGCTGGTTATTATTGTATTAGGAACGATAGTGACTCTCTTCCATTCACCTGCAGTTCATGTTTCAGATCATCCATTAAAAGGATCTAGGTAG

mRNA sequence

ATGGATGTCAGTGAAGAAACAAGCAAGAGAAGGTTCCAAAGAATTAAAGATTTCAAAGTTGTTGAGAGGGCCCTCCATATTCCTTTTCGTGATAGGGTTTTGAACTGCAAACCTTCGTTAAAACTCGTGCTGGTTATTATTGTATTAGGAACGATAGTGACTCTCTTCCATTCACCTGCAGTTCATGTTTCAGATCATCCATTAAAAGGATCTAGGTAG

Coding sequence (CDS)

ATGGATGTCAGTGAAGAAACAAGCAAGAGAAGGTTCCAAAGAATTAAAGATTTCAAAGTTGTTGAGAGGGCCCTCCATATTCCTTTTCGTGATAGGGTTTTGAACTGCAAACCTTCGTTAAAACTCGTGCTGGTTATTATTGTATTAGGAACGATAGTGACTCTCTTCCATTCACCTGCAGTTCATGTTTCAGATCATCCATTAAAAGGATCTAGGTAG

Protein sequence

MDVSEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHVSDHPLKGSR

Homology

[Close]

BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: XP_022962266.1 (putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X5 [Cucurbita moschata])

HSP 1 Score: 135 bits (339), Expect = 5.79e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 2  DVSEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAV 61
          ++SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAV
Sbjct: 8  ELSEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAV 67

Query: 62 HVSDHPLKGSR 72
          HVSDHPLKGSR
Sbjct: 68 HVSDHPLKGSR 78

[Close]

BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: XP_022989779.1 (putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X5 [Cucurbita maxima])

HSP 1 Score: 134 bits (336), Expect = 1.52e-34
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV
Sbjct: 10 SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 69

Query: 64 SDHPLKGSR 72
          SDHPLKGSR
Sbjct: 70 SDHPLKGSR 78

[Close]

BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: XP_022962242.1 (putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 134 bits (336), Expect = 1.60e-34
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV
Sbjct: 21 SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 80

Query: 64 SDHPLKGSR 72
          SDHPLKGSR
Sbjct: 81 SDHPLKGSR 89

[Close]

BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: XP_022989776.1 (putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Cucurbita maxima])

HSP 1 Score: 134 bits (336), Expect = 1.60e-34
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV
Sbjct: 21 SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 80

Query: 64 SDHPLKGSR 72
          SDHPLKGSR
Sbjct: 81 SDHPLKGSR 89

[Close]

BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: KAG7032850.1 (putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134 bits (336), Expect = 1.60e-34
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV
Sbjct: 21 SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 80

Query: 64 SDHPLKGSR 72
          SDHPLKGSR
Sbjct: 81 SDHPLKGSR 89

[Close]

BLAST of Cp4.1LG01g21040 vs. ExPASy TrEMBL
Match: A0A6J1HCM5 (Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462743 PE=3 SV=1)

HSP 1 Score: 135 bits (339), Expect = 2.80e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 2  DVSEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAV 61
          ++SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAV
Sbjct: 8  ELSEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAV 67

Query: 62 HVSDHPLKGSR 72
          HVSDHPLKGSR
Sbjct: 68 HVSDHPLKGSR 78

[Close]

BLAST of Cp4.1LG01g21040 vs. ExPASy TrEMBL
Match: A0A6J1JQ94 (Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111486862 PE=3 SV=1)

HSP 1 Score: 134 bits (336), Expect = 7.35e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV
Sbjct: 10 SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 69

Query: 64 SDHPLKGSR 72
          SDHPLKGSR
Sbjct: 70 SDHPLKGSR 78

[Close]

BLAST of Cp4.1LG01g21040 vs. ExPASy TrEMBL
Match: A0A6J1JL38 (Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111486862 PE=3 SV=1)

HSP 1 Score: 134 bits (336), Expect = 7.73e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV
Sbjct: 21 SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 80

Query: 64 SDHPLKGSR 72
          SDHPLKGSR
Sbjct: 81 SDHPLKGSR 89

[Close]

BLAST of Cp4.1LG01g21040 vs. ExPASy TrEMBL
Match: A0A6J1HC67 (Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462743 PE=3 SV=1)

HSP 1 Score: 134 bits (336), Expect = 7.73e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV
Sbjct: 21 SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 80

Query: 64 SDHPLKGSR 72
          SDHPLKGSR
Sbjct: 81 SDHPLKGSR 89

[Close]

BLAST of Cp4.1LG01g21040 vs. ExPASy TrEMBL
Match: A0A6J1JNB0 (Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111486862 PE=3 SV=1)

HSP 1 Score: 134 bits (336), Expect = 7.77e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV
Sbjct: 21 SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 80

Query: 64 SDHPLKGSR 72
          SDHPLKGSR
Sbjct: 81 SDHPLKGSR 89

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g21040 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g21040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962266.1	5.79e-35	97.18	putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X5 [Cucur...	[more]
XP_022989779.1	1.52e-34	100.00	putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X5 [Cucur...	[more]
XP_022962242.1	1.60e-34	100.00	putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Cucur...	[more]
XP_022989776.1	1.60e-34	100.00	putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Cucur...	[more]
KAG7032850.1	1.60e-34	100.00	putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Cucurbita argyro...	[more]

BLAST of Cp4.1LG01g21040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCM5	2.80e-35	97.18	Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462743 PE=3 SV=1	[more]
A0A6J1JQ94	7.35e-35	100.00	Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111486862 PE=3 SV=1	[more]
A0A6J1JL38	7.73e-35	100.00	Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111486862 PE=3 SV=1	[more]
A0A6J1HC67	7.73e-35	100.00	Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462743 PE=3 SV=1	[more]
A0A6J1JNB0	7.77e-35	100.00	Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111486862 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g21040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g21040.1	Cp4.1LG01g21040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009834	plant-type secondary cell wall biogenesis
biological_process	GO:0045492	xylan biosynthetic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015020	glucuronosyltransferase activity