Cp4.1LG01g20840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLPLIPSNPETAVMSTRPVIGNKAGDGKAKSVLPFIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETHNRPKPITDDQ Homology
BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 272 bits (695), Expect = 1.04e-91 Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 193 bits (490), Expect = 3.47e-60 Identity = 107/167 (64.07%), Postives = 120/167 (71.86%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 154 bits (388), Expect = 4.23e-45 Identity = 91/146 (62.33%), Postives = 103/146 (70.55%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus]) HSP 1 Score: 72.4 bits (176), Expect = 1.27e-13 Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia]) HSP 1 Score: 62.4 bits (150), Expect = 3.52e-09 Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 6.33e-14 Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.70e-09 Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.52e-08 Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 1.47e-05 Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A0A0KFQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 5.12e-05 Identity = 30/68 (44.12%), Postives = 35/68 (51.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|