Cp4.1LG01g20840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g20840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 17647375 .. 17647806 (+)
RNA-Seq ExpressionCp4.1LG01g20840
SyntenyCp4.1LG01g20840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA

mRNA sequence

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA

Coding sequence (CDS)

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA

Protein sequence

MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLPLIPSNPETAVMSTRPVIGNKAGDGKAKSVLPFIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETHNRPKPITDDQ
Homology
BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272 bits (695), Expect = 1.04e-91
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0

Query: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLPLIPSNPETAVMSTRPVIG 60
           MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVL LIP+NPETAVMSTRPVIG
Sbjct: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLRLIPANPETAVMSTRPVIG 60

Query: 61  NKAGDGKAKSVLPFIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKN 120
           NKAGDGKAKSVLP I ETAVTSTGTLT+SHGYRVG+GKGKSVIPK+RKLVKTMMYHCIKN
Sbjct: 61  NKAGDGKAKSVLPLIAETAVTSTGTLTDSHGYRVGIGKGKSVIPKRRKLVKTMMYHCIKN 120

Query: 121 FLISLFRRPPETHNRPKPITDDQ 143
           FL SLFRRPPETHNRPKPIT  Q
Sbjct: 121 FLKSLFRRPPETHNRPKPITGYQ 143

BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193 bits (490), Expect = 3.47e-60
Identity = 107/167 (64.07%), Postives = 120/167 (71.86%), Query Frame = 0

Query: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKS--------------------- 60
           MRFRVSPD NRV+P+ +PT H+ PS+NA+HLAPIDP KS                     
Sbjct: 1   MRFRVSPDDNRVLPEQNPTAHYLPSINANHLAPIDPAKSEISTLTKPAIPYQVGDGKAQS 60

Query: 61  VLPLIPSNPETAVMSTRPVIGNKAGDGKAKSVLPFIP---ETAVTSTGTLTNSHGYRVGV 120
           VL  IP+NPETAV+ST P +  +  DGKA+SVLP  P   ETAVTST    NS GYR GV
Sbjct: 61  VLTFIPANPETAVVSTMPAVPYQVADGKAQSVLPLTPATPETAVTST----NSLGYRAGV 120

Query: 121 GKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETHNRPKPITDDQ 143
           GK KSVIPKKRKLVKTMMYHCIKNF+ SLFRRPP+THNRPKPITDDQ
Sbjct: 121 GKVKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPKTHNRPKPITDDQ 163

BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (388), Expect = 4.23e-45
Identity = 91/146 (62.33%), Postives = 103/146 (70.55%), Query Frame = 0

Query: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLPLIPSNPETAVMSTRPVIG 60
           MRFRVSPD NR +P+ +PT HHPPS+N +HL PIDP KS         E A + T+  I 
Sbjct: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKS---------EIATL-TKLAIP 60

Query: 61  NKAGDGKAKSVLPFIP---ETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHC 120
            +  DGKAKSVLP IP   +TAVTST    NS  YR G+GK KSVIPKKRKLVKTMMYHC
Sbjct: 61  YQICDGKAKSVLPLIPAKPDTAVTST----NSVEYRAGIGKVKSVIPKKRKLVKTMMYHC 120

Query: 121 IKNFLISLFRRPPETHNR-PKPITDD 142
           IK+FL SLFR PP+TH R PKPI  D
Sbjct: 121 IKDFLKSLFRPPPKTHRRRPKPIIHD 132

BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.27e-13
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 93  RVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETHNRPKPITDD 142
           RVG  K KSVIPK+RKLVKTM+YH +K+FLISLFR   + HNRPKPI+ D
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKD 81

BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 3.52e-09
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 74  FIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETH 133
            I E AVT+ G +    G R G GK KSVIPK+R LVKTM+Y+ IK+F+ISLFR PP   
Sbjct: 32  MISEMAVTANGAI----GSRAG-GKVKSVIPKRRILVKTMIYNFIKDFIISLFRPPPSAV 91

Query: 134 NRPKP 138
             P P
Sbjct: 92  PEPPP 91

BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.33e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 93  RVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETHNRPKPITDD 142
           RVG  K KSVIPK+RKLVKTM+YH +K+FLISLFR   + HNRPKPI+ D
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKD 81

BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.70e-09
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 74  FIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETH 133
            I E AVT+ G +    G R G GK KSVIPK+R LVKTM+Y+ IK+F+ISLFR PP   
Sbjct: 32  MISEMAVTANGAI----GSRAG-GKVKSVIPKRRILVKTMIYNFIKDFIISLFRPPPSAV 91

Query: 134 NRPKP 138
             P P
Sbjct: 92  PEPPP 91

BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.52e-08
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 73  PFIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPE 131
           P +PE A T+   L  +  YR G G  KSVIPKKRKLVK MMY CIK ++ SLFR  PE
Sbjct: 11  PVVPEKAQTA---LEPAIVYR-GAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLFRPTPE 65

BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.47e-05
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 65  DGKAKSVLPFIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKNFLIS 124
           +G++ +V+  +  T   S   +  + GY+ G  K KSVIP KRKLVK MMY  IKNF+IS
Sbjct: 28  EGESMAVVEAV--TVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVIS 87

Query: 125 LF 126
            F
Sbjct: 88  RF 87

BLAST of Cp4.1LG01g20840 vs. ExPASy TrEMBL
Match: A0A0A0KFQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.12e-05
Identity = 30/68 (44.12%), Postives = 35/68 (51.47%), Query Frame = 0

Query: 71  VLPFIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPP 130
           V+P   ETA    G          G G  KSVIPKKR+LVK MMY CIK ++ SLF   P
Sbjct: 12  VIPAKSETATIVYG----------GAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPTP 69

Query: 131 ETHNRPKP 138
           +      P
Sbjct: 72  KLGGSTNP 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6602132.11.04e-9193.01hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602131.13.47e-6064.07hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602134.14.23e-4562.33hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647260.11.27e-1370.00hypothetical protein Csa_018328, partial [Cucumis sativus][more]
XP_022141661.13.52e-0955.38uncharacterized protein LOC111011963 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KDQ76.33e-1470.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A6J1CJW31.70e-0955.38uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A5D3D5901.52e-0857.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KH011.47e-0546.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
A0A0A0KFQ15.12e-0544.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g20840.1Cp4.1LG01g20840.1mRNA