Cp4.1LG01g20830 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g20830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 17654705 .. 17655127 (+)
RNA-Seq ExpressionCp4.1LG01g20830
SyntenyCp4.1LG01g20830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTCAGAGTCTCACCGGACGACAATCGGGAGCTACCCGAGCAAAATCCGACCGCCCACCACCCGCCCTCCGTCAATGGCAACCACCTTCCTCCAATCGATCCGGTGAAATCAGAGATTGCAACGTTGACGAAGCTTGCAATCCCATATCAGATCTGCGACGGAAAAGCGAAATCTGTGCTTCCATTGATTCCGGCGAAACCAGATACGGCGGTGACGTCGACTAATTCTGTCGGGTACAGAGCCGGCATCGGAAAAGTGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGGACTTCCTCAAATCGCTCTTCCGCCCCCGCCGTAAACCCACCGCCGCCGCCCCAAACCCATTATCCATGACTAGTAAAAATGTCGGATTTTTATCATAA

mRNA sequence

ATGCGATTCAGAGTCTCACCGGACGACAATCGGGAGCTACCCGAGCAAAATCCGACCGCCCACCACCCGCCCTCCGTCAATGGCAACCACCTTCCTCCAATCGATCCGGTGAAATCAGAGATTGCAACGTTGACGAAGCTTGCAATCCCATATCAGATCTGCGACGGAAAAGCGAAATCTGTGCTTCCATTGATTCCGGCGAAACCAGATACGGCGGTGACGTCGACTAATTCTGTCGGGTACAGAGCCGGCATCGGAAAAGTGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGGACTTCCTCAAATCGCTCTTCCGCCCCCGCCGTAAACCCACCGCCGCCGCCCCAAACCCATTATCCATGACTAGTAAAAATGTCGGATTTTTATCATAA

Coding sequence (CDS)

ATGCGATTCAGAGTCTCACCGGACGACAATCGGGAGCTACCCGAGCAAAATCCGACCGCCCACCACCCGCCCTCCGTCAATGGCAACCACCTTCCTCCAATCGATCCGGTGAAATCAGAGATTGCAACGTTGACGAAGCTTGCAATCCCATATCAGATCTGCGACGGAAAAGCGAAATCTGTGCTTCCATTGATTCCGGCGAAACCAGATACGGCGGTGACGTCGACTAATTCTGTCGGGTACAGAGCCGGCATCGGAAAAGTGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGGACTTCCTCAAATCGCTCTTCCGCCCCCGCCGTAAACCCACCGCCGCCGCCCCAAACCCATTATCCATGACTAGTAAAAATGTCGGATTTTTATCATAA

Protein sequence

MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATLTKLAIPYQICDGKAKSVLPLIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPRRKPTAAAPNPLSMTSKNVGFLS
Homology
BLAST of Cp4.1LG01g20830 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242 bits (617), Expect = 4.98e-80
Identity = 119/129 (92.25%), Postives = 120/129 (93.02%), Query Frame = 0

Query: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATLTKLAIPYQICDGKAKS 60
           MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATLTKLAIPYQICDGKAKS
Sbjct: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATLTKLAIPYQICDGKAKS 60

Query: 61  VLPLIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPRRK 120
           VLPLIPAKPDTAVTSTNSV YRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRP  K
Sbjct: 61  VLPLIPAKPDTAVTSTNSVEYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPK 120

Query: 121 PTAAAPNPL 129
                P P+
Sbjct: 121 THRRRPKPI 129

BLAST of Cp4.1LG01g20830 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (479), Expect = 1.45e-58
Identity = 101/161 (62.73%), Postives = 113/161 (70.19%), Query Frame = 0

Query: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATLTKLAIPYQI------- 60
           MRFRVSPDDNR LPEQNPTAH+ PS+N NHL PIDP KSEI+TLTK AIPYQ+       
Sbjct: 1   MRFRVSPDDNRVLPEQNPTAHYLPSINANHLAPIDPAKSEISTLTKPAIPYQVGDGKAQS 60

Query: 61  ------------------------CDGKAKSVLPLIPAKPDTAVTSTNSVGYRAGIGKVK 120
                                    DGKA+SVLPL PA P+TAVTSTNS+GYRAG+GKVK
Sbjct: 61  VLTFIPANPETAVVSTMPAVPYQVADGKAQSVLPLTPATPETAVTSTNSLGYRAGVGKVK 120

Query: 121 SVIPKKRKLVKTMMYHCIKDFLKSLFRPRRKPTAAAPNPLS 130
           SVIPKKRKLVKTMMYHCIK+F+KSLFR R   T   P P++
Sbjct: 121 SVIPKKRKLVKTMMYHCIKNFIKSLFR-RPPKTHNRPKPIT 160

BLAST of Cp4.1LG01g20830 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (366), Expect = 1.17e-41
Identity = 83/144 (57.64%), Postives = 99/144 (68.75%), Query Frame = 0

Query: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATL----------TKLAIP 60
           MRFRVSPD NR +P+ +PT HHPPS+N +HL PIDP KS +  +          T+  I 
Sbjct: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLRLIPANPETAVMSTRPVIG 60

Query: 61  YQICDGKAKSVLPLIPAKPDTAVTSTNSV----GYRAGIGKVKSVIPKKRKLVKTMMYHC 120
            +  DGKAKSVLPLI    +TAVTST ++    GYR GIGK KSVIPK+RKLVKTMMYHC
Sbjct: 61  NKAGDGKAKSVLPLIA---ETAVTSTGTLTDSHGYRVGIGKGKSVIPKRRKLVKTMMYHC 120

Query: 121 IKDFLKSLFRPRRKPTAAAPNPLS 130
           IK+FLKSLFR R   T   P P++
Sbjct: 121 IKNFLKSLFR-RPPETHNRPKPIT 140

BLAST of Cp4.1LG01g20830 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 1.93e-11
Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 50  PYQICDGKAKSVLPLIPAKP----DTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYH 109
           P  I DG       L P  P    + AVT+  ++G RAG GKVKSVIPK+R LVKTM+Y+
Sbjct: 16  PEPIADGTE-----LAPNNPVMISEMAVTANGAIGSRAG-GKVKSVIPKRRILVKTMIYN 75

Query: 110 CIKDFLKSLFRPR-----RKPTAAAPNPLSMTSKNVGFLS 140
            IKDF+ SLFRP        P    P P ++ SK  GF++
Sbjct: 76  FIKDFIISLFRPPPSAVPEPPPPPPPIPNTIPSKIHGFIT 109

BLAST of Cp4.1LG01g20830 vs. NCBI nr
Match: TYK18680.1 (hypothetical protein E5676_scaffold481G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.65e-10
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 63  PLIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRP 117
           P++P K  TA+    ++ YR G G +KSVIPKKRKLVK MMY CIK+++KSLFRP
Sbjct: 11  PVVPEKAQTALEP--AIVYR-GAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLFRP 62

BLAST of Cp4.1LG01g20830 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.35e-12
Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 50  PYQICDGKAKSVLPLIPAKP----DTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYH 109
           P  I DG       L P  P    + AVT+  ++G RAG GKVKSVIPK+R LVKTM+Y+
Sbjct: 16  PEPIADGTE-----LAPNNPVMISEMAVTANGAIGSRAG-GKVKSVIPKRRILVKTMIYN 75

Query: 110 CIKDFLKSLFRPR-----RKPTAAAPNPLSMTSKNVGFLS 140
            IKDF+ SLFRP        P    P P ++ SK  GF++
Sbjct: 76  FIKDFIISLFRPPPSAVPEPPPPPPPIPNTIPSKIHGFIT 109

BLAST of Cp4.1LG01g20830 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.98e-11
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 63  PLIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRP 117
           P++P K  TA+    ++ YR G G +KSVIPKKRKLVK MMY CIK+++KSLFRP
Sbjct: 11  PVVPEKAQTALEP--AIVYR-GAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLFRP 62

BLAST of Cp4.1LG01g20830 vs. ExPASy TrEMBL
Match: A0A0A0KFQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.55e-09
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 64  LIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPRRK 120
           +IPAK +TA     ++ Y  G G VKSVIPKKR+LVK MMY CIK+++KSLF P  K
Sbjct: 12  VIPAKSETA-----TIVY-GGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPTPK 62

BLAST of Cp4.1LG01g20830 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.02e-08
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 61  VLPLIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRP 117
           V  L P KP  A  S   +  R G  K+KSVIPK+RKLVKTM+YH +KDFL SLFRP
Sbjct: 12  VSDLPPDKPVAAFRSP-VIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRP 67

BLAST of Cp4.1LG01g20830 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.79e-05
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 55  DGKAKSVLPLIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSL 114
           +G++ +V+  +  +    V    ++GY+ G  K+KSVIP KRKLVK MMY  IK+F+ S 
Sbjct: 28  EGESMAVVEAVTVEASDRVVQM-AMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISR 87

Query: 115 FRPRRKPTAAAP 126
           F P    +A AP
Sbjct: 88  F-PSVGSSARAP 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6602134.14.98e-8092.25hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602131.11.45e-5862.73hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602132.11.17e-4157.64hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022141661.11.93e-1146.00uncharacterized protein LOC111011963 [Momordica charantia][more]
TYK18680.11.65e-1060.00hypothetical protein E5676_scaffold481G00190 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1CJW39.35e-1246.00uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A5D3D5907.98e-1160.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KFQ16.55e-0957.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1[more]
A0A0A0KDQ71.02e-0859.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A0A0KH013.79e-0541.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g20830.1Cp4.1LG01g20830.1mRNA