Cp4.1LG01g20510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g20510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	selenoprotein K
Location	Cp4.1LG01: 17314974 .. 17315891 (-)
RNA-Seq Expression	Cp4.1LG01g20510
Synteny	Cp4.1LG01g20510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAATTGCTTTCACATTGCACAATGACCCATTTTTTCCAATTCGTATATCCGGTGGATAAACTGGGTGCTATTCCCAGGTGGATTTGACATGTTACCATTCATCTGATAGTTTCTTTGAACTATGAAATTGAATGCTTGTGTTCTTGATTCCTAGCATGAAATAACCAGCTATGCACTTGCACGATATCTTGTAGGCGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACCATAACTGATTTCTTTTGGGCCATTGTAAACATTATCGGTGTGTTTTTTACCACCTTATTCTCGGTAAGGTGTTCTTTGTTGTCTTGTGAATAATGTTAGGTATTCAGAACCACAATCATAGGATTAAAGATTAACTTTCATGCTTCTTTCTAGATGGAAAAATCTGAGGCTTATAGAAAAGGATCTGGTTCTGGCAAGAAATGGGACGGTGGTGGCCCAGGAGGTCCCGGGTCAGGGCCTTACGGTGGTCGTCCACGTGGGCCACCTCGTGGTCTAGACAACGTTCGAGGAATCGATCATAGTAAGTTCAATGCTTGTTTTCGAACTTTTTTCCTCTATTCTTTCATTCAATTTACTTACTGTTCTGTGATCTGAACTATGACAACCAGGTTCACTACCTGCCTGTGGCTCGTGCTGCGGCTAAACTTTTGGCTGCTTCCATGGTGCATTTACACAAGGGTGTCTACAAAATACTCTTCAATTTAAAATCGTGGGCCGTGTTGTAAATGTTGATGGAATGCTATCTGCGAATATAAATTAGTTCATTAGATAAAAAAAAAAAATGTGGTTTCATAAATTAGTACTCAAAAGTTAATTTTGCCAATCAATGGATAAAATTTTAAGATGCCAAAGCATTTTTAATATATTATCTTGCAATGATTTCTTGTACTAATTTT

mRNA sequence

ATGCTAAAATTGCTTTCACATTGCACAATGACCCATTTTTTCCAATTCGTATATCCGGTGGATAAACTGGGTGCTATTCCCAGCTATGCACTTGCACGATATCTTGTAGGCGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACCATAACTGATTTCTTTTGGGCCATTGTAAACATTATCGGTGTGTTTTTTACCACCTTATTCTCGATGGAAAAATCTGAGGCTTATAGAAAAGGATCTGGTTCTGGCAAGAAATGGGACGGTGGTGGCCCAGGAGGTCCCGGGTCAGGGCCTTACGGTGGTCGTCCACGTGGGCCACCTCGTGGTCTAGACAACGTTCGAGGAATCGATCATAGTTCACTACCTGCCTGTGGCTCGTGCTGCGGCTAAACTTTTGGCTGCTTCCATGGTGCATTTACACAAGGGTGTCTACAAAATACTCTTCAATTTAAAATCGTGGGCCGTGTTGTAAATGTTGATGGAATGCTATCTGCGAATATAAATTAGTTCATTAGATAAAAAAAAAAAATGTGGTTTCATAAATTAGTACTCAAAAGTTAATTTTGCCAATCAATGGATAAAATTTTAAGATGCCAAAGCATTTTTAATATATTATCTTGCAATGATTTCTTGTACTAATTTT

Coding sequence (CDS)

ATGCTAAAATTGCTTTCACATTGCACAATGACCCATTTTTTCCAATTCGTATATCCGGTGGATAAACTGGGTGCTATTCCCAGCTATGCACTTGCACGATATCTTGTAGGCGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACCATAACTGATTTCTTTTGGGCCATTGTAAACATTATCGGTGTGTTTTTTACCACCTTATTCTCGATGGAAAAATCTGAGGCTTATAGAAAAGGATCTGGTTCTGGCAAGAAATGGGACGGTGGTGGCCCAGGAGGTCCCGGGTCAGGGCCTTACGGTGGTCGTCCACGTGGGCCACCTCGTGGTCTAGACAACGTTCGAGGAATCGATCATAGTTCACTACCTGCCTGTGGCTCGTGCTGCGGCTAA

Protein sequence

MLKLLSHCTMTHFFQFVYPVDKLGAIPSYALARYLVGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

Homology

[Close]

BLAST of Cp4.1LG01g20510 vs. NCBI nr
Match: XP_031743925.1 (selenoprotein K isoform X2 [Cucumis sativus])

HSP 1 Score: 196 bits (497), Expect = 2.50e-62
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 34  YLVGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGP 93
           +L GVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGP
Sbjct: 4   HLKGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGP 63

Query: 94  GGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 64  GGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. NCBI nr
Match: XP_022964558.1 (selenoprotein K-like [Cucurbita moschata] >XP_022964567.1 selenoprotein K-like [Cucurbita moschata] >XP_022989819.1 selenoprotein K [Cucurbita maxima] >XP_023516420.1 selenoprotein K-like [Cucurbita pepo subsp. pepo] >KAG6602082.1 Selenoprotein K, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195 bits (495), Expect = 5.05e-62
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 96
           GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 97  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. NCBI nr
Match: KAE8646613.1 (hypothetical protein Csa_005613 [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 5.83e-62
Identity = 102/117 (87.18%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 23  LGAIPSYALARYL--------VGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEK 82
           L  +PSY L  YL        VGVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEK
Sbjct: 34  LHNVPSY-LIFYLRINKLWSFVGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEK 93

Query: 83  SEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           SEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 94  SEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 149

[Close]

BLAST of Cp4.1LG01g20510 vs. NCBI nr
Match: XP_004140863.1 (selenoprotein K isoform X1 [Cucumis sativus])

HSP 1 Score: 194 bits (494), Expect = 7.18e-62
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 96
           GVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 97  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. NCBI nr
Match: XP_008445670.1 (PREDICTED: selenoprotein K [Cucumis melo])

HSP 1 Score: 194 bits (494), Expect = 7.18e-62
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 96
           GVVKSQRSFWRLKTITDFFWAI+NIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIINIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 97  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. ExPASy TrEMBL
Match: A0A6J1HI52 (selenoprotein K-like OS=Cucurbita moschata OX=3662 GN=LOC111464545 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 2.45e-62
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 96
           GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 97  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. ExPASy TrEMBL
Match: A0A6J1JQF6 (selenoprotein K OS=Cucurbita maxima OX=3661 GN=LOC111486892 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 2.45e-62
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 96
           GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 97  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. ExPASy TrEMBL
Match: A0A0A0KDW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G040550 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 3.48e-62
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 96
           GVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 97  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. ExPASy TrEMBL
Match: A0A1S3BE45 (selenoprotein K OS=Cucumis melo OX=3656 GN=LOC103488629 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 3.48e-62
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 96
           GVVKSQRSFWRLKTITDFFWAI+NIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIINIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 97  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. ExPASy TrEMBL
Match: A0A6J1JVZ4 (selenoprotein K-like OS=Cucurbita maxima OX=3661 GN=LOC111489356 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 2.01e-61
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 96
           GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 97  GSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 131
           GSGPYGGRPRGPPR LDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGRPRGPPRSLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cp4.1LG01g20510 vs. TAIR 10
Match: AT4G08230.1 (glycine-rich protein )

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-27
Identity = 67/107 (62.62%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 37  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKW-----DGG 96
           GVVK++R  WRL+TI DFF +I+N+I VFF T+FSMEKS+AYRKGS   KKW      GG
Sbjct: 7   GVVKAKRPIWRLRTIKDFFLSIINLIQVFFVTMFSMEKSDAYRKGSKPNKKWGGGMGGGG 66

Query: 97  GPGGPGSGPYGGRPRGPPR-GLDNVRGI------DHSSLPACGSCCG 132
           G GG   G  GGR  GPPR GLDNVRG+      DH+SLPACGSCCG
Sbjct: 67  GGGGGSGGGGGGRGGGPPRGGLDNVRGLNDIRGADHNSLPACGSCCG 113

[Close]

BLAST of Cp4.1LG01g20510 vs. TAIR 10
Match: AT4G08230.2 (glycine-rich protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-13
Identity = 45/72 (62.50%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 72  MEKSEAYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVRGI------D 131
           MEKS+AYRKGS   KKW      GGG GG   G  GGR  GPPR GLDNVRG+      D
Sbjct: 1   MEKSDAYRKGSKPNKKWGGGMGGGGGGGGGSGGGGGGRGGGPPRGGLDNVRGLNDIRGAD 60

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g20510 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g20510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743925.1	2.50e-62	96.94	selenoprotein K isoform X2 [Cucumis sativus]	[more]
XP_022964558.1	5.05e-62	100.00	selenoprotein K-like [Cucurbita moschata] >XP_022964567.1 selenoprotein K-like [...	[more]
KAE8646613.1	5.83e-62	87.18	hypothetical protein Csa_005613 [Cucumis sativus]	[more]
XP_004140863.1	7.18e-62	98.95	selenoprotein K isoform X1 [Cucumis sativus]	[more]
XP_008445670.1	7.18e-62	98.95	PREDICTED: selenoprotein K [Cucumis melo]	[more]

BLAST of Cp4.1LG01g20510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI52	2.45e-62	100.00	selenoprotein K-like OS=Cucurbita moschata OX=3662 GN=LOC111464545 PE=4 SV=1	[more]
A0A6J1JQF6	2.45e-62	100.00	selenoprotein K OS=Cucurbita maxima OX=3661 GN=LOC111486892 PE=4 SV=1	[more]
A0A0A0KDW6	3.48e-62	98.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G040550 PE=4 SV=1	[more]
A0A1S3BE45	3.48e-62	98.95	selenoprotein K OS=Cucumis melo OX=3656 GN=LOC103488629 PE=4 SV=1	[more]
A0A6J1JVZ4	2.01e-61	98.95	selenoprotein K-like OS=Cucurbita maxima OX=3661 GN=LOC111489356 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g20510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G08230.1	3.7e-27	62.62	glycine-rich protein	[more]
AT4G08230.2	3.0e-13	62.50	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024491	Selenoprotein SelK/SelG	PFAM	PF10961	SelK_SelG	coord: 37..108 e-value: 2.6E-19 score: 69.6
IPR024491	Selenoprotein SelK/SelG	PANTHER	PTHR16875	SELENOPROTEIN K	coord: 37..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g20510.1	Cp4.1LG01g20510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane